Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Bacillus coagulans 36D1

Reference regulog properties
Source regulog: CcpA - Bacillales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus coagulans 36D1
Orthologous TF(s) No orthologous TFs found
Regulated genes 21
Built upon 559 sites [see more]
Predicted regulatory interactions in Bacillus coagulans 36D1
Locus tag Position Score Sequence
Position: -27
Score: 4.1
Sequence: ATGGTACCGGTTTCAT
Locus tag: BcoaDRAFT_0358
BcoaDRAFT_0358 -27 4.1 ATGGTACCGGTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgR
Ortholog function: Transcriptional regulator of pectin utilization, LacI family
Bacillus licheniformis DSM 13 BLi03828 -41 4.7 TTGAAATCGGTTTCAA
Bacillus pumilus SAFR-032 BPUM_3245 -53 4.2 TTGAAATCGGTTTCGA
Bacillus subtilis subsp. subtilis str. 168 BSU22120 -41 4.7 TTGAAATCGGTTTCAA
Position: -109
Score: 4.7
Sequence: TTGGAAGCGTTTTATA
Locus tag: BcoaDRAFT_2482
BcoaDRAFT_2482 -109 4.7 TTGGAAGCGTTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hop
Ortholog function: Candidate type III effector Hop protein
Bacillus clausii KSM-K16 ABC0307 -60 4.3 TTTTAAGCGTTTCCAG
Bacillus licheniformis DSM 13 BLi03700 -32 4.9 TTGAAAACGCTTTATA
Bacillus pumilus SAFR-032 BPUM_2973 -59 5.1 ATGAAAGCGTTTAAAT
Oceanobacillus iheyensis HTE831 OB1012 -71 4.9 TTGAAAACGCTTTATA
Position: -119
Score: 4.7
Sequence: TTGTAAGCATTTACAT
Locus tag: BcoaDRAFT_2485
BcoaDRAFT_2485 -119 4.7 TTGTAAGCATTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntP
Ortholog function: H+:gluconate symporter
Bacillus clausii KSM-K16 ABC1109 -111 4.8 TTGAAAGCGTTTTCCG
Bacillus licheniformis DSM 13 BLi04288 -81 4.7 ATGAAAGTGTTTGCAT
Bacillus subtilis subsp. subtilis str. 168 BSU40070 -81 4.7 ATGAAAGTGTTTGCAT
Position: -94
Score: 4.8
Sequence: ATGAAAACGCTTTTTT
Locus tag: BcoaDRAFT_0989
BcoaDRAFT_0989 -94 4.8 ATGAAAACGCTTTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araE
Ortholog function: Arabinose-proton symporter
Bacillus licheniformis DSM 13 BLi02065 -178 5.2 TTGAAAGCGTTTAAAA
-93 5.1 TTGAAAGCGCTTTTAT
Bacillus pumilus SAFR-032 BPUM_2326 -35 4.7 ATGAAAGCGGTTAATT
Oceanobacillus iheyensis HTE831 OB2796 -88 5 ATGAAAGCGTTTTATA
Position: -303
Score: 4.9
Sequence: TTGTAAGCGCATTCTT
Locus tag: BcoaDRAFT_0996
BcoaDRAFT_0996 -303 4.9 TTGTAAGCGCATTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araR
Ortholog function: Transcriptional repressor of arabinoside utilization operon, GntR family
Bacillus amyloliquefaciens FZB42 RBAM_031330 -229 4.9 ATAAAAACGCTTACAA
-59 4.6 ATGAAAGGGCTTACTA
Bacillus licheniformis DSM 13 BLi02061 -265 4 CTGATAGCGATTTCAT
-239 4 AAGAAAGCATTTTCCT
Bacillus pumilus SAFR-032 BPUM_2330 -254 4.9 TTGATAGCGGTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU33970 -115 4.4 AGTAAAGCGTTTTCAT
Oceanobacillus iheyensis HTE831 OB2800 -289 4.1 CTGAAAACGCCTACAT
Position: -128
Score: 4.3
Sequence: AAGAATGCGCTTACAA
Position: -63
Score: 5
Sequence: ATGTAAGCGTTGACAA
Locus tag: BcoaDRAFT_0997
BcoaDRAFT_0997 -128 4.3 AAGAATGCGCTTACAA
-63 5 ATGTAAGCGTTGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araF
Ortholog function: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)
Bacillus clausii KSM-K16 ABC0409 -35 5.4 TTGAAAGCGTTATCAA
Bacillus halodurans C-125 BH3442 -64 5 ATGACAACGCTTTCAT
Bacillus licheniformis DSM 13 BLi00442 -128 4.8 ATGTAAGCGCTTCAAA
Geobacillus kaustophilus HTA426 GK1910 -129 4.4 TTGAAAACGCTTCAAC
Position: -54
Score: 4.8
Sequence: TTGTAAGCGATATCAA
Locus tag: BcoaDRAFT_2091
BcoaDRAFT_2091 -54 4.8 TTGTAAGCGATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: iolF
Ortholog function: Minor myo-inositol transporter
Bacillus amyloliquefaciens FZB42 RBAM_036730 -172 5.1 ATGAAAACGTTGTCAT
Bacillus licheniformis DSM 13 BLi04246 -176 4.7 ATGGAAACGTTGTCAT
Bacillus licheniformis DSM 13 BLi00639 -108 4.9 ATGATAACGCTTACAA
Bacillus subtilis subsp. subtilis str. 168 BSU39710 -172 5.1 ATGAAAACGTTGTCAT
Oceanobacillus iheyensis HTE831 OB0494 -82 4.5 ATGAAAACGAATTCAG
Position: -171
Score: 4.7
Sequence: AAGTAAGCGTTATCAT
Locus tag: BcoaDRAFT_1250
BcoaDRAFT_1250 -171 4.7 AAGTAAGCGTTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: Glycerol uptake facilitator protein
Bacillus cereus ATCC 14579 BC1034 -191 4.7 TTGACACCGCTTTCAT
Bacillus clausii KSM-K16 ABC3383 -198 4.2 ATGTATCCGTTTACAA
Bacillus licheniformis DSM 13 BLi00994 -207 4.5 TTGACAACGCTTTCAC
Bacillus pumilus SAFR-032 BPUM_0882 -191 4.9 TTGACAACGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU09280 -182 4.7 TTGACACCGCTTTCAT
Geobacillus kaustophilus HTA426 GK1359 -206 5.1 TTGACAGCGTTTTCAA
Oceanobacillus iheyensis HTE831 OB2476 -164 4.7 TTGACAACGCTTTCAG
Position: -106
Score: 4.4
Sequence: TTTGAAGCGCTTACTT
Locus tag: BcoaDRAFT_0638
BcoaDRAFT_0638 -106 4.4 TTTGAAGCGCTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndk
Ortholog function: Nucleoside diphosphate kinase (EC 2.7.4.6)
Anoxybacillus flavithermus WK1 Aflv_1096 -104 4.3 ATTAAATCGTTTTCAT
Bacillus amyloliquefaciens FZB42 RBAM_020890 -37 4.5 TTGAAAGCCTATACAT
Bacillus clausii KSM-K16 ABC1890 -70 4.4 TTGTTAGCGTTTTCCT
Bacillus licheniformis DSM 13 BLi02408 -39 4.5 TTGAAAGCCTATACAT
Bacillus pumilus SAFR-032 BPUM_2004 -43 4.3 ATGTAAGCCTATACAT
Bacillus subtilis subsp. subtilis str. 168 BSU22730 -38 4.1 GTGAAAGCCTATACAT
Geobacillus kaustophilus HTA426 GK2209 -105 4.4 TTATTAGCGCTTTCAA
Position: -95
Score: 4.8
Sequence: TTGAAAACGCTTTCCG
Locus tag: BcoaDRAFT_2184
BcoaDRAFT_2184 -95 4.8 TTGAAAACGCTTTCCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: acoR
Ortholog function: Transcriptional activator of acetoin dehydrogenase operon AcoR
Bacillus amyloliquefaciens FZB42 RBAM_008340 -67 5 TTGAAAGCGCTTTATT
Bacillus cereus ATCC 14579 BC2766 -78 5 TTGAAAACGCTTTTAT
Bacillus halodurans C-125 BH1826 -117 4.7 TTGTTAGCGCTTTCTT
Bacillus licheniformis DSM 13 BLi00853 -51 5.1 TTGAAAGCGCTTTTAT
Bacillus pumilus SAFR-032 BPUM_0455 -59 5.1 TTGAAAGCGCTTTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU08100 -67 5 TTGAAAGCGCTTTATT
Position: -197
Score: 4.2
Sequence: AAGAAAACCTTTTCAT
Position: -61
Score: 4.4
Sequence: TTGAAAACGGTTGATT
Locus tag: BcoaDRAFT_0092
BcoaDRAFT_0092 -197 4.2 AAGAAAACCTTTTCAT
-61 4.4 TTGAAAACGGTTGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruR
Ortholog function: Transcriptional regulator of fructose utilization, DeoR family
Anoxybacillus flavithermus WK1 Aflv_1478 -24 4.6 ATGTAAGCGATTTAAA
Bacillus amyloliquefaciens FZB42 RBAM_014120 -28 4.5 ATGAATACGTTTCCAA
Bacillus cereus ATCC 14579 BC3720 -46 4.3 TTGTGACCGTTTTCAT
Bacillus licheniformis DSM 13 BLi01652 -29 4.6 ATGAAGGCGTTTCCAA
Bacillus pumilus SAFR-032 BPUM_1334 -30 4.7 ATGAATACGTTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU14380 -29 4.7 ATGAATACGTTTTCAT
Oceanobacillus iheyensis HTE831 OB0840 -113 5 TTGAAAGCGTTTTATT
Position: -114
Score: 4.5
Sequence: ATGAAAAGGCATTCAA
Locus tag: BcoaDRAFT_0157
BcoaDRAFT_0157 -114 4.5 ATGAAAAGGCATTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgX
Ortholog function: Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis
Bacillus amyloliquefaciens FZB42 RBAM_023120 -109 4.4 TTTTAACCGTTTTCAT
Bacillus clausii KSM-K16 ABC2499 -98 4.3 TTGTACCCGTTTTCAT
Bacillus halodurans C-125 BH2820 -112 4.5 TTTTAAACGTTTTCTT
Bacillus licheniformis DSM 13 BLi02653 -105 4.4 TTTTAACCGTTTTCAT
Bacillus pumilus SAFR-032 BPUM_2209 -103 4.4 TTTTAACCGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU24790 -84 4.3 TCGATAGCGTTTTCAT
Position: 22
Score: 4.5
Sequence: AAGAAAGCGCTTTATT
Locus tag: BcoaDRAFT_0158
BcoaDRAFT_0158 22 4.5 AAGAAAGCGCTTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgY
Ortholog function: Uncharacterized short membrane protein
Bacillus amyloliquefaciens FZB42 RBAM_023110 -73 4.8 ATGAAAATGTTTACAT
Bacillus clausii KSM-K16 ABC2500 -76 4.4 AAGAAAGCATTTACAA
Bacillus licheniformis DSM 13 BLi02652 -71 4.8 ATGAAAATGTTTACAT
Bacillus pumilus SAFR-032 BPUM_2208 -76 4.6 ATGTAAATGTTTACAT
Bacillus subtilis subsp. subtilis str. 168 BSU24780 -72 4.8 ATGAAAATGTTTACAT
Oceanobacillus iheyensis HTE831 OB1915 -75 4.6 ATAGAAACGTTTACAA
Paenibacillus sp. JDR-2 Pjdr2_3908 -124 4.3 ATCATAACGCTTTCAA
Position: 0
Score: 4.4
Sequence: ATGAATGCGATTACAA
Locus tag: BcoaDRAFT_2289
BcoaDRAFT_2289 0 4.4 ATGAATGCGATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cstA
Ortholog function: Carbon starvation-induced membrane protein
Bacillus amyloliquefaciens FZB42 RBAM_025770 0 4.4 ATGAATGCGATTACAA
Bacillus licheniformis DSM 13 BLi03019 -62 4.3 ATGATTGCGCTTACAA
Bacillus pumilus SAFR-032 BPUM_2525 0 4.6 ATGAATGCGGTTACAA
Bacillus subtilis subsp. subtilis str. 168 BSU28710 0 4.6 ATGAATGCGGTTACAA
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