Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of FadR regulog to Geobacillus kaustophilus HTA426

Reference regulog properties
Source regulog: FadR - Bacillales
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Palmitoyl-CoA; Oleoyl-CoA
Phylum: Firmicutes
Propagated regulon:
Target genome Geobacillus kaustophilus HTA426
Orthologous TF(s) GK2689
Regulated genes 6
Built upon 48 sites [see more]
Predicted regulatory interactions in Geobacillus kaustophilus HTA426
Locus tag Position Score Sequence
Position: -38
Score: 6.3
Sequence: ATGAATGGTCATTCATTCAT
Locus tag: GK0668
GK0668 -38 6.3 ATGAATGGTCATTCATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lcfB
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Anoxybacillus flavithermus WK1 Aflv_2253 -41 6.3 ATGAATGATGATTCATTCAT
Geobacillus kaustophilus HTA426 GK0668 -38 6.3 ATGAATGGTCATTCATTCAT
Oceanobacillus iheyensis HTE831 OB1176 -41 6.9 ATGAATGAGTATTCATTCAT
Position: -34
Score: 6.5
Sequence: ATGAATGAGTAATCAGTCAT
Locus tag: GK1044
GK1044 -34 6.5 ATGAATGAGTAATCAGTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ykuF
Ortholog function: 2,4-dienoyl-CoA reductase, mitochondrial precursor (EC 1.3.1.34)
Bacillus subtilis subsp. subtilis str. 168 BSU14060 -36 6.4 TTGAATGAATAATCATTCAC
Bacillus amyloliquefaciens FZB42 RBAM_013850 -40 6.8 ATGAATGATTATTCATTCAA
Bacillus pumilus SAFR-032 BPUM_1303 -40 6.7 ATGAATGAATAGTCATTCAA
Bacillus licheniformis DSM 13 BLi01620 -36 6.8 TTGAATGAATACTCATTCAT
Anoxybacillus flavithermus WK1 Aflv_1909 -37 6.5 ATGAATGAATAACCATTCAT
Geobacillus kaustophilus HTA426 GK1044 -34 6.5 ATGAATGAGTAATCAGTCAT
Bacillus cereus ATCC 14579 BC3990 -29 5.2 ATGAATGTGTATTCATTTTT
Bacillus halodurans C-125 BH2144 -38 6.8 TTGAATGAATATTCATTCAA
Position: -76
Score: 5.5
Sequence: AAAAATGAATGATCATTCAT
Locus tag: GK1401
GK1401 -76 5.5 AAAAATGAATGATCATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Aflv_1606
Ortholog function: hypothetical Zn-dependent hydrolase
Anoxybacillus flavithermus WK1 Aflv_1606 -53 6.5 ATGAATGAATATTCATTCTT
Geobacillus kaustophilus HTA426 GK1401 -76 5.5 AAAAATGAATGATCATTCAT
Bacillus clausii KSM-K16 ABC0525 -38 6.4 GTGAATGATTACTCATTCAT
Oceanobacillus iheyensis HTE831 OB0204 -73 6.6 ATGACTGATTATTCATTCAT
Position: -60
Score: 6.1
Sequence: ATGAATGATGGTTCATTCAT
Locus tag: GK2689
GK2689 -60 6.1 ATGAATGATGGTTCATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadR
Ortholog function: Transcriptional regulator of fatty acids degradation, TetR family
Bacillus subtilis subsp. subtilis str. 168 BSU28550 -44 6.9 ATGAATGAATAGTCATTCAT
Bacillus amyloliquefaciens FZB42 RBAM_025610 -38 6.9 ATGAATGAATAGTCATTCAT
Bacillus pumilus SAFR-032 BPUM_2512 -41 6.8 ATGAATGAATACTCATTCAA
Bacillus licheniformis DSM 13 BLi03002 -43 6.9 ATGAATGAGTATTCATTCAT
Anoxybacillus flavithermus WK1 Aflv_0565 -44 6.9 ATGAATGATTATTCATTCAT
Geobacillus kaustophilus HTA426 GK2689 -60 6.1 ATGAATGATGGTTCATTCAT
Bacillus cereus ATCC 14579 BC4525 -45 6.6 ATGAATGACTATTCATTCAG
Bacillus halodurans C-125 BH3102 -38 6.9 ATGAATGAATACTCATTCAT
Bacillus clausii KSM-K16 ABC2672 -45 6.8 ATGAATGAACATTCATTCAT
Oceanobacillus iheyensis HTE831 OB2121 -50 5.9 ATGAATGATCATTCACTCAG
Position: -40
Score: 6.5
Sequence: ATGAATGACCATTCATTCAA
Locus tag: GK3008
GK3008 -40 6.5 ATGAATGACCATTCATTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadN
Ortholog function: Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Bacillus subtilis subsp. subtilis str. 168 BSU32840 39 6.7 ATGAATGACTATTCATTCAA
Bacillus amyloliquefaciens FZB42 RBAM_029920 -39 6.7 ATGAATGACTATTCATTCAA
Bacillus pumilus SAFR-032 BPUM_2942 -39 6.5 ATGAATGACTGTTCATTCAA
Bacillus licheniformis DSM 13 BLi03466 -39 6.8 ATGAATGAGTATTCATTCAA
Geobacillus kaustophilus HTA426 GK3008 -40 6.5 ATGAATGACCATTCATTCAA
Bacillus cereus ATCC 14579 BC5004 -38 6.5 TTGAATGAGCATTCATTCAA
Bacillus halodurans C-125 BH3488 -36 6.5 ATGAATGAGTATTCATTCGT
Bacillus clausii KSM-K16 ABC2990 -46 5.9 ATGAATGAGTGTTCATTCGG
Oceanobacillus iheyensis HTE831 OB2395 -41 6.6 ATGAATGAGCATTCATTCAA
Position: -106
Score: 6.3
Sequence: TTGACTGAATGCTCATTCAT
Locus tag: GK3398
GK3398 -106 6.3 TTGACTGAATGCTCATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadF
Ortholog function: Fe-S oxidoreductase
Bacillus subtilis subsp. subtilis str. 168 BSU37180 -98 6.3 TTGACTGAACACTCATTCAT
Bacillus amyloliquefaciens FZB42 RBAM_034330 -82 6.3 TTGACTGAACACTCATTCAT
Bacillus pumilus SAFR-032 BPUM_3374 -88 6.6 TTGACTGAATACTCATTCAT
Bacillus licheniformis DSM 13 BLi03969 -82 6.3 TTGACTGAACACTCATTCAT
Anoxybacillus flavithermus WK1 Aflv_2740 -85 6.3 TTGACTGAATGCTCATTCAT
Geobacillus kaustophilus HTA426 GK3398 -106 6.3 TTGACTGAATGCTCATTCAT
Bacillus cereus ATCC 14579 BC5345 -115 5.9 TTGACTGAATGCTCACTCAT
Bacillus halodurans C-125 BH3802 -123 6.5 ATGAGTGAATACTCATTCAT
Bacillus clausii KSM-K16 ABC3892 -109 6.2 CTGACTGAATGCTCATTCAT
Oceanobacillus iheyensis HTE831 OB3014 -106 6.3 TTGACTGAATGATCATTCAT
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