Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LexA regulog to Geobacillus kaustophilus HTA426

Reference regulog properties
Source regulog: LexA - Bacillales
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Propagated regulon:
Target genome Geobacillus kaustophilus HTA426
Orthologous TF(s) GK1328
Regulated genes 9
Built upon 206 sites [see more]
Predicted regulatory interactions in Geobacillus kaustophilus HTA426
Locus tag Position Score Sequence
Position: -55
Score: 4.1
Sequence: GCGAACATACGTGCTA
Locus tag: GK0681
GK0681 -55 4.1 GCGAACATACGTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: addB
Ortholog function: ATP-dependent deoxyribonuclease (subunit B)
Bacillus pumilus SAFR-032 BPUM_0993 -115 4.2 TCGAAGAGAGGTTCGT
Anoxybacillus flavithermus WK1 Aflv_2231 -174 4.3 GCGAACAAATGATCGA
34 4.3 TAAAACATATGCTTGA
Geobacillus kaustophilus HTA426 GK0681 -55 4.1 GCGAACATACGTGCTA
Bacillus cereus ATCC 14579 BC1137 -40 4.5 GCAAACTAACGTTCGT
Oceanobacillus iheyensis HTE831 OB1181 -166 4.7 CAGATCATATGTTCGT
Paenibacillus sp. JDR-2 Pjdr2_2219 -90 5.1 CAGAACATACGTTTGT
Position: -85
Score: 4.4
Sequence: ACGAATGGACGTTCGT
Locus tag: GK1295
GK1295 -85 4.4 ACGAATGGACGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombination protein A
Bacillus subtilis subsp. subtilis str. 168 BSU16940 -87 4.7 CCGAATATGCGTTCGC
Bacillus amyloliquefaciens FZB42 RBAM_016780 -86 4.7 CCGAATATGCGTTCGC
Bacillus pumilus SAFR-032 BPUM_1598 -88 5.2 TCGAATATGTGTTCGT
Bacillus licheniformis DSM 13 BLi01918 -259 4.3 TCGAATTTCAGTTCGC
-86 4.8 TCGAATATGCGTTCGC
Anoxybacillus flavithermus WK1 Aflv_1530 34 4.7 ACGAACATCTATTCGT
Geobacillus kaustophilus HTA426 GK1295 -85 4.4 ACGAATGGACGTTCGT
Bacillus cereus ATCC 14579 BC3779 -85 5.1 TCGAATAAATGTTCGA
Bacillus halodurans C-125 BH2383 -343 4 AAAAATTCACGTTTGT
-121 4.9 GCGAATAAATGTTCGT
Bacillus clausii KSM-K16 ABC2199 -132 5.3 ACGAATAAATGTTCGT
Oceanobacillus iheyensis HTE831 OB1624 -82 4.4 AAGAACATCCATTCGT
Paenibacillus sp. JDR-2 Pjdr2_3379 -297 3.9 GCGAACAATAATTTGT
-84 4.9 ACGAATGTATGTTCGA
Position: -103
Score: 4.9
Sequence: AGGAACATTTGTTTGT
Position: -74
Score: 5.1
Sequence: TCGAACCTATGTTTGT
Locus tag: GK1328
GK1328 -103 4.9 AGGAACATTTGTTTGT
-74 5.1 TCGAACCTATGTTTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response transcriptional repressor
Bacillus subtilis subsp. subtilis str. 168 BSU17850 -139 4.2 AGGAATGTTTGTTCGC
-102 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus amyloliquefaciens FZB42 RBAM_017650 -140 4.5 AAGAATGTTTGTTCGC
-103 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus pumilus SAFR-032 BPUM_1686 -142 4.6 TAGAATGTGTGTTCGT
-103 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus licheniformis DSM 13 BLi02032 -346 4.1 ATGAATTTGTGTTTGT
-141 4.2 CAGAATGTTTGTTCGG
-103 4.6 ACGAACAAATGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Anoxybacillus flavithermus WK1 Aflv_1506 -110 5.2 TAGAACATTTGTTTGT
-82 4.8 GAGAACTTTTGTTCGT
-53 5.2 TCGAACTTATGTTTGT
Geobacillus kaustophilus HTA426 GK1328 -136 4.5 TAGAATGTTTGTTCGC
-103 4.9 AGGAACATTTGTTTGT
-74 5.1 TCGAACCTATGTTTGT
Bacillus cereus ATCC 14579 BC3690 -70 5.2 TCGAACTTATGTTTGT
Bacillus halodurans C-125 BH2356 -107 4.7 AAGAACACTTGTTTGT
-78 4.9 TAGAACTTATGTTTGC
Bacillus clausii KSM-K16 ABC2167 -107 4.6 AGGAACAACTGTTCGT
-76 4.9 TAGAACTTATGTTTGC
Oceanobacillus iheyensis HTE831 OB1669 -142 4.8 CAGAACAATTGTTCTT
-107 4.6 CCGAACATATGATCTT
-78 4.2 TAGAACGAGTGTTTGC
Paenibacillus sp. JDR-2 Pjdr2_2621 -157 4.4 CCGAACGTTTGTTCTG
-118 5.1 ACGAACAAATGTTTGC
-72 5.1 AAGAACTTATGTTTGT
Position: -94
Score: 5.1
Sequence: ACAAACATAGGTTCGA
Locus tag: GK1329
GK1329 -94 5.1 ACAAACATAGGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Pjdr2_2622
Ortholog function: Peptidoglycan-binding protein
Paenibacillus sp. JDR-2 Pjdr2_2622 -129 4.2 TAGAACCGGAGTTCGT
-113 5.1 ACAAACATAAGTTCTT
-97 4.8 AAAAACAAAAGTTCGC
-67 5 GCAAACATTTGTTCGT
-28 4.7 CAGAACAAACGTTCGG
Position: -40
Score: 4.1
Sequence: AGAAACAGGTGTTCTT
Locus tag: GK1751
GK1751 -40 4.1 AGAAACAGGTGTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: parE
Ortholog function: Topoisomerase IV subunit B (EC 5.99.1.-)
Bacillus subtilis subsp. subtilis str. 168 BSU18090 -220 4.9 ACAAACATACGTTCTC
Bacillus amyloliquefaciens FZB42 RBAM_017900 -243 4.3 GCGAACTCATGTTCTT
Bacillus pumilus SAFR-032 BPUM_1709 -246 4.8 TAGAACATTTGTTCTG
Anoxybacillus flavithermus WK1 Aflv_1444 -30 4.7 AGAAACAAATGTTCTT
Geobacillus kaustophilus HTA426 GK1751 -40 4.1 AGAAACAGGTGTTCTT
Bacillus cereus ATCC 14579 BC3597 -44 4.6 AGAAACATATGTTCTG
Bacillus halodurans C-125 BH2140 -72 4.9 CCGAACATGCGTTTGT
Bacillus clausii KSM-K16 ABC1989 -64 4.5 CAGAACAAACATTCGT
Oceanobacillus iheyensis HTE831 OB1693 -57 4.6 AAGAACAGTTGTTCTA
Paenibacillus sp. JDR-2 Pjdr2_2492 -172 4 GCGAATTTATGTTATT
Position: -244
Score: 3.8
Sequence: CAGAAAAAATTTTCGA
Position: -105
Score: 3.9
Sequence: CAGAACGGTTGTTCTC
Position: 1
Score: 4
Sequence: TGAAACATTTGTCCGA
Locus tag: GK2527
GK2527 -244 3.8 CAGAAAAAATTTTCGA
-105 3.9 CAGAACGGTTGTTCTC
1 4 TGAAACATTTGTCCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sda
Ortholog function: Sporulation inhibitor sda
Bacillus subtilis subsp. subtilis str. 168 BSU25690 -127 4.4 CAGAACGATTGTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_023990 -144 4.4 CAGAACGATTGTTCTT
Bacillus pumilus SAFR-032 BPUM_2304 -145 4.4 CAGAACGATTGTTCTT
Bacillus licheniformis DSM 13 BLi02762 -145 4.2 CAGAACGATTGTTCTC
Anoxybacillus flavithermus WK1 Aflv_0810 -181 4 AAAAACCGACGTTTTT
-57 4.4 CAGAACGATTGTTCTT
Geobacillus kaustophilus HTA426 GK2527 -105 3.9 CAGAACGGTTGTTCTC
Position: -196
Score: 4
Sequence: TTGTACATACGTTCGA
Locus tag: GK2593
GK2593 -196 4 TTGTACATACGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bofC
Ortholog function: forespore regulator of the sigma-K checkpoint
Anoxybacillus flavithermus WK1 Aflv_0710 -282 4.1 CAGAAGATTCGTTTGA
Position: -85
Score: 4.8
Sequence: ACGAATATGAGTTCGC
Locus tag: GK3086
GK3086 -85 4.8 ACGAATATGAGTTCGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrB
Ortholog function: Excinuclease ABC subunit B
Bacillus subtilis subsp. subtilis str. 168 BSU35170 -93 4.9 CCGAACTTTAGTTCGT
Bacillus amyloliquefaciens FZB42 RBAM_032310 -90 5 TCGAACTTTAGTTCGT
Bacillus pumilus SAFR-032 BPUM_3148 -82 4.9 CCGAACTTTAGTTCGT
Bacillus licheniformis DSM 13 BLi03759 -81 4.9 CCGAACTTTAGTTCGT
Anoxybacillus flavithermus WK1 Aflv_2547 -81 5.1 TAGAATATTTGTTCGT
Geobacillus kaustophilus HTA426 GK3086 -85 4.8 ACGAATATGAGTTCGC
Bacillus cereus ATCC 14579 BC5168 -86 4.9 CCGAATATCTGTTCGT
Bacillus halodurans C-125 BH3595 -91 4.9 CAAAACAAACGTTCGT
Bacillus clausii KSM-K16 ABC3059 -337 4.4 TAGTACGTATGTTCGT
Oceanobacillus iheyensis HTE831 OB2488 -70 4.7 ACGAATACTTGTTCGT