Propagation of Crp regulog to Cyanothece sp. PCC 8801

Reference regulog properties
Source regulog:	Crp - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	repressor (activator)
Biological process:
Effector:	Cyclic 3',5'-AMP
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Cyanothece sp. PCC 8801
Orthologous TF(s)	PCC8801_0890
Regulated genes	19

Built upon 106 sites [see more]

Predicted regulatory interactions in *Cyanothece sp. PCC 8801*
	Locus tag	Position	Score	Sequence
Position: -35 Score: 4.6 Sequence: TGTGAGCTAAATCACT Locus tag: PCC8801_0019
	PCC8801_0019	-35	4.6	TGTGAGCTAAATCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: slr1503
Ortholog function: Predicted aldo/keto reductase
Synechocystis sp. PCC 6803	slr1503	-1	3.8	TATGACAATTAGCACC
Cyanothece sp. ATCC 51142	cce_2512	-72	4.1	TGTGAGTTTTGTCACG
Cyanothece sp. PCC 8801	PCC8801_0019	-35	4.6	TGTGAGCTAAATCACT
Trichodesmium erythraeum IMS101	Tery_2155	-99	3.9	CATGGTTTTAATCATA

Position: -153 Score: 3.8 Sequence: TTTGATCTCGATCATT Locus tag: PCC8801_0091
	PCC8801_0091	-153	3.8	TTTGATCTCGATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0687
Ortholog function: Conserved hypothetical protein
Synechocystis sp. PCC 6803	slr0013	-56	4.1	TTTGATCAAAGTCCTA
Cyanothece sp. ATCC 51142	cce_3288	-137	3.8	TTTGACTTAAATAACC
Cyanothece sp. PCC 8801	PCC8801_0091	-153	3.8	TTTGATCTCGATCATT
Prochlorococcus marinus str. MIT 9313	PMT0719	17	3.7	TTTGAAACAATTCACC

Position: -146 Score: 3.9 Sequence: TGTTGTCAAAGTCACA Position: -41 Score: 3.8 Sequence: GTTGATTTAAGTCCTA Locus tag: PCC8801_0414
	PCC8801_0414	-146	3.9	TGTTGTCAAAGTCACA
		-41	3.8	GTTGATTTAAGTCCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufR
Ortholog function: Iron-sulfur cluster biogenesis regulator, DeoR family
Cyanothece sp. ATCC 51142	cce_0683	-95	3.9	TGTTGTCAAAGTCACA
Cyanothece sp. PCC 8801	PCC8801_0414	-41	3.8	GTTGATTTAAGTCCTA
Microcystis aeruginosa NIES-843	MAE_23100	-128	3.7	TGTTGTCAAAGTCACG
Nostoc sp. PCC 7120	all2491	-42	3.7	TGTTGTCAAAGTCAAA
Prochlorococcus marinus str. MIT 9313	PMT1607	-71	3.9	CCTGATCTAAGGCAAC

Position: -29 Score: 3.3 Sequence: TGTCATCATTATCTCA Locus tag: PCC8801_0569
	PCC8801_0569	-29	3.3	TGTCATCATTATCTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxC
Ortholog function: Cytochrome c oxidase subunit 3 (EC 1.9.3.1)
Cyanothece sp. ATCC 51142	cce_1975	-78	3.7	TGTGATAAAAAAGCCA
Nostoc sp. PCC 7120	alr2516	-222	3.1	TCTGGAATAATTCCCC

Position: -239 Score: 3.8 Sequence: GGTGAAATTAGGCAAA Locus tag: PCC8801_1079
	PCC8801_1079	-239	3.8	GGTGAAATTAGGCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rlpA
Ortholog function: Predicted lipoprotein A
Cyanothece sp. ATCC 51142	cce_3687	-215	4	TGTTAACTAGATCACA
Cyanothece sp. PCC 8801	PCC8801_1079	-239	3.8	GGTGAAATTAGGCAAA
Cyanothece sp. PCC 7425	Cyan7425_3340	-328	4.2	CGTGATTCGGATCACA
Thermosynechococcus elongatus BP-1	tlr0333	-317	4.8	GGTGATCTGAGTCACA

Position: -80 Score: 3.9 Sequence: TTTGAAAATTATCACC Locus tag: PCC8801_1783
	PCC8801_1783	-80	3.9	TTTGAAAATTATCACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifS
Ortholog function: Cysteine desulfurase (EC 2.8.1.7)
Cyanothece sp. ATCC 51142	cce_0557	-123	4	GGTGGTATAAATGACA
Cyanothece sp. PCC 8801	PCC8801_1783	-80	3.9	TTTGAAAATTATCACC
Cyanothece sp. PCC 7425	Cyan7425_2362	-40	3.9	ACTGTTATAAAGCACC

Position: 21 Score: 4.3 Sequence: AGTGACAATGTTCATA Locus tag: PCC8801_1790
	PCC8801_1790	21	4.3	AGTGACAATGTTCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifX
Ortholog function: Nitrogen fixation protein
Cyanothece sp. PCC 8801	PCC8801_1790	21	4.3	AGTGACAATGTTCATA
Nostoc sp. PCC 7120	all1436	21	4.3	AGTGACAGAATTCATA
Trichodesmium erythraeum IMS101	Tery_4140	21	4.3	ACTGATTTTATTCATA

Position: -177 Score: 4 Sequence: TGTGATACTCATCATA Locus tag: PCC8801_2042
	PCC8801_2042	-177	4	TGTGATACTCATCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppa
Ortholog function: inorganic pyrophosphatase
Cyanothece sp. ATCC 51142	cce_4329	-265	4.5	TGTGATTATTATCAAA
		-104	4.4	TGTGATTATTATCAAC
Cyanothece sp. PCC 8801	PCC8801_2042	-177	4	TGTGATACTCATCATA
Cyanothece sp. PCC 7425	Cyan7425_1645	-273	3.7	ACTGATTAAGGGCACT
Nostoc sp. PCC 7120	all3570	-160	3.7	TGTGATATTTTTCCAC
Trichodesmium erythraeum IMS101	Tery_1519	-237	3.9	AATGATAGAGTTCACG

Position: -74 Score: 4.8 Sequence: AGTGATCTGGGTCACA Locus tag: PCC8801_2372
	PCC8801_2372	-74	4.8	AGTGATCTGGGTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: murF
Ortholog function: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10)
Synechococcus sp. PCC 7002	SYNPCC7002_A2693	-92	4.1	GGTGACAAATATCACT
Synechocystis sp. PCC 6803	slr1351	-101	5	GGTGATCTAGATCACA
Cyanothece sp. ATCC 51142	cce_4424	-83	5.1	TGTGATCTTGATCACA
Cyanothece sp. PCC 8801	PCC8801_2372	-74	4.8	AGTGATCTGGGTCACA
Synechococcus sp. JA-3-3Ab	CYA_0077	-32	3.8	ATTGACTAGAGTCATG
Thermosynechococcus elongatus BP-1	null	3	4.2	ATTGATCTAAAACAAC

Position: -31 Score: 4 Sequence: ATTGAGCTAAAGCATA Locus tag: PCC8801_2557
	PCC8801_2557	-31	4	ATTGAGCTAAAGCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gap2
Ortholog function: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59)
Synechococcus sp. PCC 7002	SYNPCC7002_A0106	-65	3.7	TATGATTGGGGTCATC
Cyanothece sp. PCC 8801	PCC8801_2557	-31	4	ATTGAGCTAAAGCATA
Nostoc sp. PCC 7120	all5062	-56	3.8	TATGATTGGGGTCAAA
		-1	4.1	TGTGATTAGAGTCGCA
Trichodesmium erythraeum IMS101	Tery_4030	-410	3.6	TATGATAATTCTCAAG

Position: 5 Score: 3.9 Sequence: GATGTTTAAAGTCACC Locus tag: PCC8801_2788
	PCC8801_2788	5	3.9	GATGTTTAAAGTCACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcC
Ortholog function: Phycobilisome linker polypeptide, allophycocyanin-associated
Cyanothece sp. ATCC 51142	cce_2911	5	4.1	AATGTTTAAAGTCACC
Cyanothece sp. PCC 8801	PCC8801_2788	5	3.9	GATGTTTAAAGTCACC
Microcystis aeruginosa NIES-843	MAE_10240	5	4.1	GATGTTCAAAATCACC
Trichodesmium erythraeum IMS101	Tery_3647	5	4.2	AATGTTTAAGATCACA
Synechococcus sp. JA-3-3Ab	CYA_2225	5	3.7	CATGTTTAAGATCACG
Synechococcus sp. WH 8102	SYNW0483	5	3.9	GTTGTTCAAAGTCACC
Thermosynechococcus elongatus BP-1	null	-233	3.6	CATGAAAGAAGTCACC

Position: -115 Score: 4.2 Sequence: ATTGATATTAATCAAT Locus tag: PCC8801_3693
	PCC8801_3693	-115	4.2	ATTGATATTAATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2113
Ortholog function: Transglutaminase-like protein
Synechocystis sp. PCC 6803	sll1608	-188	3.8	AATGATAAACATCACT
Cyanothece sp. PCC 8801	PCC8801_3693	-115	4.2	ATTGATATTAATCAAT
Cyanothece sp. PCC 7425	Cyan7425_1077	-107	4.8	AGTGATCAAAGTCATG
Trichodesmium erythraeum IMS101	Tery_0156	-50	4.7	AATGATCTTAATCAAA

Position: -250 Score: 4.3 Sequence: TTTGATTTAATTCAAC Locus tag: PCC8801_3705
	PCC8801_3705	-250	4.3	TTTGATTTAATTCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlA-II
Ortholog function: Magnesium-protoporphyrin IX monomethyl ester cyclase 2 (EC 1.14.13.81)
Synechocystis sp. PCC 6803	sll1874	-403	4.8	TGTGAGAATAATCACA
Cyanothece sp. PCC 8801	PCC8801_3705	-250	4.3	TTTGATTTAATTCAAC
Microcystis aeruginosa NIES-843	MAE_46620	-45	3.7	TATGTTTAAAATCCTA

Position: -271 Score: 3.7 Sequence: AGTGACCTAAATTCCG Locus tag: PCC8801_4329
	PCC8801_4329	-271	3.7	AGTGACCTAAATTCCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: sigF
Ortholog function: RNA polymerase sigma-37
Synechococcus sp. PCC 7002	SYNPCC7002_A1924	-223	4.3	TTTGATAAAAATCAAT
Cyanothece sp. PCC 8801	PCC8801_4329	-271	3.7	AGTGACCTAAATTCCG
Cyanothece sp. PCC 7425	Cyan7425_3949	-91	4.4	TGTGTTCTAGATCACT
Trichodesmium erythraeum IMS101	Tery_3916	-118	4.1	TGTGTTTGATATCACA
Thermosynechococcus elongatus BP-1	null	-174	4.7	TGTGGTCAAGATCACA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of Crp regulog to Cyanothece sp. PCC 8801

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --