Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtcB regulog to Cyanothece sp. PCC 8801

Reference regulog properties
Source regulog: NtcB - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Nitrite
Phylum: Cyanobacteria
Propagated regulon:
Target genome Cyanothece sp. PCC 8801
Orthologous TF(s) PCC8801_2329
Regulated genes 3
Built upon 44 sites [see more]
Predicted regulatory interactions in Cyanothece sp. PCC 8801
Locus tag Position Score Sequence
Position: -263
Score: 4
Sequence: TTGCAGATATTTTAT
Position: -126
Score: 3.9
Sequence: ATGCAAAATAATCAT
Locus tag: PCC8801_2468
PCC8801_2468 -263 4 TTGCAGATATTTTAT
-126 3.9 ATGCAAAATAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: ferredoxin--nitrite reductase
Synechococcus sp. PCC 7002 SYNPCC7002_A1827 -162 4 ATGCGGCGATCGCAT
Synechocystis sp. PCC 6803 slr0898 -103 4.8 ATGCGTAAACTGCAT
Cyanothece sp. ATCC 51142 cce_1223 -127 4.7 ATGCAAAAAATCCAT
-105 4.1 ATGCAAAAAACGGAT
Cyanothece sp. PCC 8801 PCC8801_2468 -126 3.9 ATGCAAAATAATCAT
Cyanothece sp. PCC 7425 Cyan7425_4573 -174 4.5 ATGCAGGTTTGGCAT
Microcystis aeruginosa NIES-843 MAE_18410 -241 4.6 ATGCACTTACTGCAT
Nostoc sp. PCC 7120 alr0607 -562 4.8 ATGCAGAAAACGCAT
Trichodesmium erythraeum IMS101 Tery_1068 -250 4.7 ATGTAATAAATGCAT
Synechococcus elongatus PCC 7942 Synpcc7942_1240 -109 4.3 TTGCAGAACATGCAT
Synechococcus sp. JA-3-3Ab CYA_0612 -101 4.4 ATGACAAAACTGCAT
Thermosynechococcus elongatus BP-1 tlr1349 -111 4.4 ATACAAAAACTGTAT
Position: 0
Score: 4
Sequence: ATGCAAATTCTCGAT
Locus tag: PCC8801_4393
PCC8801_4393 0 4 ATGCAAATTCTCGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrtD
Ortholog function: nitrate/nitrite ABC transport system, ATP-binding protein
Synechocystis sp. PCC 6803 sll1453 -125 4.9 ATGCAGTAATCGCAT
Cyanothece sp. PCC 8801 PCC8801_4393 -235 4.5 ATGCAAAAACCACAT
-213 4 ATGCTTTTATTGCAA
Microcystis aeruginosa NIES-843 MAE_14770 -395 3.7 ATGCTTTTATGACAT
Position: -235
Score: 4.5
Sequence: ATGCAAAAACCACAT
Position: -213
Score: 4
Sequence: ATGCTTTTATTGCAA
Position: -204
Score: 4
Sequence: TTGCAAAAATTGTAA
Position: -173
Score: 3.6
Sequence: ATACGAAAAATTCAA
Position: -164
Score: 3.7
Sequence: ATTCAAAATCCCCAT
Locus tag: PCC8801_4396
PCC8801_4396 -235 4.5 ATGCAAAAACCACAT
-213 4 ATGCTTTTATTGCAA
-204 4 TTGCAAAAATTGTAA
-173 3.6 ATACGAAAAATTCAA
-164 3.7 ATTCAAAATCCCCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrtA
Ortholog function: nitrate/nitrite ABC transport system, substrate-binding protein
Synechocystis sp. PCC 6803 sll1450 -125 4.9 ATGCAGTAATCGCAT
Cyanothece sp. PCC 8801 PCC8801_4396 -235 4.5 ATGCAAAAACCACAT
-213 4 ATGCTTTTATTGCAA
Cyanothece sp. PCC 7425 Cyan7425_4572 -174 4.5 ATGCAGGTTTGGCAT
Microcystis aeruginosa NIES-843 MAE_14800 -395 3.7 ATGCTTTTATGACAT
Nostoc sp. PCC 7120 alr0608 -562 4.8 ATGCAGAAAACGCAT
Nostoc sp. PCC 7120 all3333 -135 4.4 ATGCAATTTTTACAA
Synechococcus elongatus PCC 7942 Synpcc7942_1239 -109 4.3 TTGCAGAACATGCAT
Synechococcus sp. JA-3-3Ab CYA_0613 -101 4.4 ATGACAAAACTGCAT
Thermosynechococcus elongatus BP-1 tlr1350 -111 4.4 ATACAAAAACTGTAT
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