Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Crp regulog to Synechococcus elongatus PCC 6301

Reference regulog properties
Source regulog: Crp - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process:
Effector: Cyclic 3',5'-AMP
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus elongatus PCC 6301
Orthologous TF(s) syc0307_d
Regulated genes 10
Built upon 106 sites [see more]
Predicted regulatory interactions in Synechococcus elongatus PCC 6301
Locus tag Position Score Sequence
Position: 5
Score: 3.6
Sequence: GATGTTCCGAATCACC
Locus tag: syc1188_d
syc1188_d 5 3.6 GATGTTCCGAATCACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcC
Ortholog function: Phycobilisome linker polypeptide, allophycocyanin-associated
Cyanothece sp. ATCC 51142 cce_2911 5 4.1 AATGTTTAAAGTCACC
Cyanothece sp. PCC 8801 PCC8801_2788 5 3.9 GATGTTTAAAGTCACC
Microcystis aeruginosa NIES-843 MAE_10240 5 4.1 GATGTTCAAAATCACC
Trichodesmium erythraeum IMS101 Tery_3647 5 4.2 AATGTTTAAGATCACA
Synechococcus sp. JA-3-3Ab CYA_2225 5 3.7 CATGTTTAAGATCACG
Synechococcus sp. WH 8102 SYNW0483 5 3.9 GTTGTTCAAAGTCACC
Thermosynechococcus elongatus BP-1 null -233 3.6 CATGAAAGAAGTCACC
Position: -222
Score: 4.2
Sequence: TGTGATTAAGCACACA
Locus tag: syc2014_d
syc2014_d -222 4.2 TGTGATTAAGCACACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Cyanothece sp. ATCC 51142 cce_0800 -23 3.6 CATGATTTTATTCAGA
Cyanothece sp. PCC 8801 PCC8801_3887 -203 4.3 GGTGACAGAAATCAAA
Microcystis aeruginosa NIES-843 MAE_02800 -44 3.6 TTTGATTATGATCGCC
Nostoc sp. PCC 7120 all2561 -44 4.4 AATGATATAGCTCACA
Synechococcus elongatus PCC 7942 Synpcc7942_2079 -63 4.2 TGTGATTAAGCACACA
Position: -1
Score: 4.1
Sequence: AATGACATCAATCACG
Locus tag: syc2126_c
syc2126_c -1 4.1 AATGACATCAATCACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0129
Ortholog function: Transcription regulator, AbrB family
Synechococcus elongatus PCC 7942 Synpcc7942_1969 -1 4.1 AATGACATCAATCACG
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