Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Synechococcus elongatus PCC 6301

Reference regulog properties
Source regulog: Fur - Cyanobacteria
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus elongatus PCC 6301
Orthologous TF(s) syc0557_d
Regulated genes 16
Built upon 167 sites [see more]
Predicted regulatory interactions in Synechococcus elongatus PCC 6301
Locus tag Position Score Sequence
Position: -177
Score: 3.7
Sequence: ATTGAGAGTAATTTCTGAT
Position: -45
Score: 5.2
Sequence: ATTGAGAATTATTGTAAAT
Position: -35
Score: 4.3
Sequence: ATTGTAAATTACTGGCATT
Locus tag: syc0002_c
syc0002_c -177 3.7 ATTGAGAGTAATTTCTGAT
-45 5.2 ATTGAGAATTATTGTAAAT
-35 4.3 ATTGTAAATTACTGGCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: isiA
Ortholog function: Photosystem II chlorophyll-binding protein
Synechocystis sp. PCC 6803 sll0247 -269 2.8 ATTTCTTAATAATTTTAGT
Cyanothece sp. ATCC 51142 cce_1785 -18 4.4 ATTGCAAATCTTTTTAAAT
Cyanothece sp. PCC 7425 Cyan7425_2434 -61 4.7 ATTGAGTTTATTTCTCAAC
Nostoc sp. PCC 7120 all4001 -161 4.8 ATTAAGAATCTTTTTCAAT
Trichodesmium erythraeum IMS101 Tery_1667 -156 3.2 TTTTATAATTTCTTTTAAA
Synechococcus elongatus PCC 7942 Synpcc7942_1542 -45 5.2 ATTGAGAATTATTGTAAAT
Thermosynechococcus elongatus BP-1 null -121 5.5 AATGCTATTAATTCTCAAT
Position: -202
Score: 3.1
Sequence: TGTTCAATTGATTTTCGAT
Locus tag: syc0137_c
syc0137_c -202 3.1 TGTTCAATTGATTTTCGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlL
Ortholog function: Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A2347 -126 3.6 TTTTATAAAAACTCTAAGT
Synechocystis sp. PCC 6803 slr0749 -173 3.3 ATTTTATTTTTGTCTCAAT
Cyanothece sp. PCC 8801 PCC8801_0791 -242 2.7 ATTTAGTAAATTTTAAAGT
Microcystis aeruginosa NIES-843 MAE_16230 -150 2.8 ATTTATATAATTTTTAAGC
Thermosynechococcus elongatus BP-1 null -211 2.8 TTTTGTATTTTTGTTTAAT
Position: -81
Score: 4.2
Sequence: ATTGAGAATAAATCGCAGA
Locus tag: syc0149_d
syc0149_d -81 4.2 ATTGAGAATAAATCGCAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: afuC
Ortholog function: Predicted Fe(3+) ABC transport system, ATP-binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0871 -83 5.1 GTTGAGAATAGTTCTTAAT
Cyanothece sp. ATCC 51142 cce_3801 -163 4.2 ATTGAAAATTAATGCTAAT
Cyanothece sp. PCC 7425 Cyan7425_3510 -105 5.3 ATTGAGAATAATTTTCAAA
-60 4 GTTGAATAATAGTCTTAAT
Microcystis aeruginosa NIES-843 MAE_12460 -117 4.4 TTTGAGAAAGTTTCCTAAT
Trichodesmium erythraeum IMS101 Tery_3222 -94 5.1 AATGAAAAAAATATTCAAT
Synechococcus elongatus PCC 7942 Synpcc7942_1406 -81 4.2 ATTGAGAATAAATCGCAGA
Synechococcus sp. JA-3-3Ab CYA_2794 -26 3.8 AGTGAAAATCTTTTGCAAC
Gloeobacter violaceus PCC 7421 gll1012 -64 3.7 ATTGACAATTAATTGCAGC
Position: -24
Score: 4
Sequence: AATAAAAAAGTTTCGTAAT
Locus tag: syc0604_c
syc0604_c -24 4 AATAAAAAAGTTTCGTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cce_4396
Ortholog function: Predicted transcription regualator, ArsR family
Cyanothece sp. PCC 7425 Cyan7425_2984 -78 2.7 TATATGAATATCTTGTAAT
-48 3.9 ATTGCAATTATATTACAAT
Synechococcus elongatus PCC 7942 Synpcc7942_0938 -30 4 AATAAAAAAGTTTCGTAAT
Thermosynechococcus elongatus BP-1 null -45 4 AATTAAAATTATATTCATC
Position: -4
Score: 3
Sequence: ATTCATGACCGGTTTTATT
Locus tag: syc0697_d
syc0697_d -4 3 ATTCATGACCGGTTTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0913
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0913 -146 2.2 TTTTTACAACATTTTTAAA
-68 3.8 AATGAGAAAATTTTGATAT
Synechocystis sp. PCC 6803 sll1911 -59 4.2 GTTGTTAAAATTTAACAAT
Cyanothece sp. ATCC 51142 cce_0019 -75 3.1 TTTTTTAATATTTTTTGAT
Cyanothece sp. PCC 8801 PCC8801_2812 -67 4.4 TATGATAAAATTTATTAAA
Trichodesmium erythraeum IMS101 Tery_4773 -64 2.4 TTTATGAAATATTTATGAT
Position: -43
Score: 3
Sequence: GAAGAAAATTTTTCGGAAC
Locus tag: syc0831_c
syc0831_c -43 3 GAAGAAAATTTTTCGGAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbM
Ortholog function: Photosystem II reaction center M protein
Cyanothece sp. ATCC 51142 cce_0893 -29 3 TTTCTTATAATTTCTTAAC
Cyanothece sp. PCC 8801 PCC8801_2861 -49 3.8 ATTGTAAAAAAATATTAAC
Nostoc sp. PCC 7120 asl0883 -90 3.5 ATTCTTAATTTTTTGTAAT
Synechococcus sp. JA-3-3Ab CYA_0642 -92 2.8 ATTAAAAATATGATTTAAA
Position: -53
Score: 3.2
Sequence: ACAGATTTTAATATTTATT
Position: -1
Score: 2.9
Sequence: CATGCCGAGCATTCGCTTT
Locus tag: syc0832_c
syc0832_c -53 3.2 ACAGATTTTAATATTTATT
-1 2.9 CATGCCGAGCATTCGCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdx
Ortholog function: Predicted ferredoxin
Nostoc sp. PCC 7120 asl0884 -90 3.5 ATTCTTAATTTTTTGTAAT
Synechococcus sp. JA-3-3Ab CYA_0643 -92 2.8 ATTAAAAATATGATTTAAA
Position: -205
Score: 3.3
Sequence: TATGAGTTCCGGTCTCGAT
Locus tag: syc0873_c
syc0873_c -205 3.3 TATGAGTTCCGGTCTCGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbD
Ortholog function: Photosystem II, reaction center protein
Synechocystis sp. PCC 6803 sll0849 -298 3.3 AATGTAAAATATTTGCTAA
Cyanothece sp. ATCC 51142 cce_0660 -298 3.4 ATTGTAAATTTTTTGCTAA
Cyanothece sp. PCC 7425 Cyan7425_5031 -91 3.1 GTTTATAAACTTTCGTAAA
Microcystis aeruginosa NIES-843 MAE_41160 -274 2.9 ATTTGTAATTTTTTGCTAA
Synechococcus sp. JA-3-3Ab CYA_2647 -106 3 TTTATTAATTTTTCGTAAG
Position: -84
Score: 3.3
Sequence: TTTCATAGTGGTTGTTAGT
Position: -1
Score: 3
Sequence: TATGAAATCGGTCTGGAAT
Locus tag: syc0949_c
syc0949_c -84 3.3 TTTCATAGTGGTTGTTAGT
-1 3 TATGAAATCGGTCTGGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2351
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A2351 -216 2.9 TTTATTATTGTTTTTTAGT
Cyanothece sp. ATCC 51142 cce_3809 -132 3.2 GTTTTTATTTTCTGTCAAT
Cyanothece sp. PCC 8801 PCC8801_2575 -247 3.1 ATTTCTCCTTATTTTTAAT
Trichodesmium erythraeum IMS101 Tery_2644 -122 4.2 AATTAGATTAATTTTGAAT
Position: -25
Score: 3.2
Sequence: TGCGACTCCTATTTTCAAT
Locus tag: syc1507_c
syc1507_c -25 3.2 TGCGACTCCTATTTTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxA
Ortholog function: Cytochrome c oxidase, subunit I
Cyanothece sp. ATCC 51142 cce_1976 -136 3.7 AATTTCAATCAATTTCAAT
Cyanothece sp. PCC 8801 PCC8801_0568 -152 2.7 TTTGTTTATTATTTGTTAC
Microcystis aeruginosa NIES-843 MAE_22940 -216 2.5 TTTTAGATATTCTTTAGAT
Nostoc sp. PCC 7120 alr0951 -134 3.7 TTTACTCAAGATTATTAAT
Position: -159
Score: 3.2
Sequence: ATTCACTAAAGATGACAAT
Position: -149
Score: 4.3
Sequence: GATGACAATATTTTTCGAT
Position: -93
Score: 3
Sequence: TACGAGTTCTGTAGTTATT
Position: -37
Score: 3
Sequence: TTTTTGAAGATTTAGCGTT
Locus tag: syc1509_d
syc1509_d -159 3.2 ATTCACTAAAGATGACAAT
-149 4.3 GATGACAATATTTTTCGAT
-93 3 TACGAGTTCTGTAGTTATT
-37 3 TTTTTGAAGATTTAGCGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ctaA
Ortholog function: Heme A synthase
Cyanothece sp. PCC 8801 PCC8801_0256 -185 2.2 TTTTATTAACTTATGTAAA
Microcystis aeruginosa NIES-843 MAE_22920 -282 2.5 TCTTTTCAATATTTTTAAT
Trichodesmium erythraeum IMS101 Tery_1780 -278 3.5 ATTGTTAAAATTATGAAAT
-167 3.3 ATTAAAAAAAAATTTAAAA
Synechococcus elongatus PCC 7942 Synpcc7942_2601 -158 4.3 GATGACAATATTTTTCGAT
Prochlorococcus marinus str. MIT 9313 PMT1340 -30 2.6 ATTTAAATTATTTTATTGT
Position: -177
Score: 3.4
Sequence: TATGAAGTTACTTGTCAAA
Position: -107
Score: 3.1
Sequence: TTTTCTGTTAGAACTCAAT
Locus tag: syc1955_c
syc1955_c -177 3.4 TATGAAGTTACTTGTCAAA
-107 3.1 TTTTCTGTTAGAACTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlH
Ortholog function: Protoporphyrin IX magnesium chelatase, subunit H
Synechococcus sp. PCC 7002 SYNPCC7002_A1018 -57 3.8 ATAGTTATAAATTTTTAAT
Cyanothece sp. ATCC 51142 cce_4358 -183 2.7 AATAAATAATTTTTGTAAA
-138 2.3 ATTTGTCAATATTTGTAAC
Cyanothece sp. PCC 8801 PCC8801_4320 -186 2.3 ATTTGTCAATATTTGTAAC
Microcystis aeruginosa NIES-843 MAE_12190 -247 2.8 ATTAAATATTAATTTTTGT
Nostoc sp. PCC 7120 all4365 -272 2.9 GTTTTTTATTTTTTTCATC
-232 3 AATATTAATTTTTCTTTAC
Trichodesmium erythraeum IMS101 Tery_3224 -65 3 GTTTAAAATTTTTTGATAT
Position: -296
Score: 3.3
Sequence: TCTTTGAATTATTGTTAAT
Position: -290
Score: 3.1
Sequence: AATTATTGTTAATCGCCTT
Locus tag: syc2044_d
syc2044_d -296 3.3 TCTTTGAATTATTGTTAAT
-290 3.1 AATTATTGTTAATCGCCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: psaA
Ortholog function: Photosystem I P700 chlorophyll A apoprotein A1
Synechococcus sp. PCC 7002 SYNPCC7002_A1961 -206 3.4 AGTTTTAAATATTGTTAAT
Cyanothece sp. ATCC 51142 cce_0989 -205 3.4 AATTTTAATTATTGTTAAG
Microcystis aeruginosa NIES-843 MAE_47560 -297 3.2 ATTAATAAACTTTTGTAAA
Nostoc sp. PCC 7120 alr5154 -177 3.4 ATTTTGAATTATTGTTAAA
Trichodesmium erythraeum IMS101 Tery_4669 -80 4 ATTGATAATTCTTTACAAC
Synechococcus elongatus PCC 7942 Synpcc7942_2049 -296 3.3 TCTTTGAATTATTGTTAAT
Gloeobacter violaceus PCC 7421 gvip470 -195 2.2 TTTTTAAAAATTGTTAAGT
Position: -264
Score: 4.1
Sequence: ATTCTTGATGGTTCTCAAT
Locus tag: syc2245_c
syc2245_c -264 4.1 ATTCTTGATGGTTCTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sigC
Ortholog function: RNA polymerase sigma-subunit
Nostoc sp. PCC 7120 all1692 -320 3.5 AATAAACATAATTTTTACT
Position: -28
Score: 3.1
Sequence: ATTGCAAATATCTGGAGAT
Position: -17
Score: 3.5
Sequence: CTGGAGATTGCTAAGCAAT
Position: -11
Score: 3.1
Sequence: ATTGCTAAGCAATGACGAT
Locus tag: syc2448_d
syc2448_d -28 3.1 ATTGCAAATATCTGGAGAT
-17 3.5 CTGGAGATTGCTAAGCAAT
-11 3.1 ATTGCTAAGCAATGACGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbD
Ortholog function: Photosystem II, reaction center protein
Synechocystis sp. PCC 6803 sll0849 -298 3.3 AATGTAAAATATTTGCTAA
Cyanothece sp. ATCC 51142 cce_0660 -298 3.4 ATTGTAAATTTTTTGCTAA
Cyanothece sp. PCC 7425 Cyan7425_5031 -91 3.1 GTTTATAAACTTTCGTAAA
Microcystis aeruginosa NIES-843 MAE_41160 -274 2.9 ATTTGTAATTTTTTGCTAA
Synechococcus sp. JA-3-3Ab CYA_2647 -106 3 TTTATTAATTTTTCGTAAG