Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of SmtB regulog to Anabaena variabilis ATCC 29413

Reference regulog properties
Source regulog: SmtB - Cyanobacteria
Regulator type: Transcription factor
Regulator family: ArsR
Regulation mode: repressor
Biological process: Zinc resistance
Effector: Zinc ion, (Zn2+)
Phylum: Cyanobacteria
Propagated regulon:
Target genome Anabaena variabilis ATCC 29413
Orthologous TF(s) Ava_4437, Ava_1126
Regulated genes 2
Built upon 16 sites [see more]
Predicted regulatory interactions in Anabaena variabilis ATCC 29413
Locus tag Position Score Sequence
Position: -74
Score: 6.7
Sequence: CACAATTGAATAGTTGTTCAGATGTT
Locus tag: Ava_1125
Ava_1125 -74 6.7 CACAATTGAATAGTTGTTCAGATGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: alr7622
Ortholog function: Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)
Nostoc sp. PCC 7120 alr7622 (deprecated) 13 6.4 TACAATTGAATAGTTGTTCAATTGTT
Position: -83
Score: 6.7
Sequence: AACATCTGAACAACTATTCAATTGTG
Locus tag: Ava_1126
Ava_1126 -83 6.7 AACATCTGAACAACTATTCAATTGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: smtB
Ortholog function: Zinc stress transcriptional regulator, ArsR family
Cyanothece sp. PCC 7425 Cyan7425_4462 -124 7.3 AACATCTGAACAACTGTTCATATGTT
Microcystis aeruginosa NIES-843 MAE_02380 -269 6.7 AATCCATGAACATCTGTTCAGATGTT
Nostoc sp. PCC 7120 all7621 (deprecated) -85 6.4 AACAATTGAACAACTATTCAATTGTA
Synechococcus elongatus PCC 7942 Synpcc7942_1291 -84 7.1 AATATCTGAATAACTGTTCATGTGTT
-52 6.3 AACATCTGAATCTTGATTCAGGTATG
Synechococcus sp. PCC 7002 SYNPCC7002_A2564 -75 6.2 AATAGTTGAACGATTGTTCACATTTT
-43 7.2 AACACATGAACAATTATTCAGGTATT
Synechocystis sp. PCC 6803 sll0792 -97 6.5 AACACCTGAAGATATGCTCAGATATT
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