Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Synechococcus sp. RS9916

Reference regulog properties
Source regulog: Fur - Cyanobacteria
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus sp. RS9916
Orthologous TF(s) RS9916_31007
Regulated genes 4
Built upon 167 sites [see more]
Predicted regulatory interactions in Synechococcus sp. RS9916
Locus tag Position Score Sequence
Position: -35
Score: 4.2
Sequence: ATTGCGTATCATTCGCATC
Position: -1
Score: 4.4
Sequence: AATGCGGATCACTCTCAAT
Locus tag: RS9916_33202
RS9916_33202 -35 4.2 ATTGCGTATCATTCGCATC
-1 4.4 AATGCGGATCACTCTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufA
Ortholog function: Fe ABC transport system, substrate-binding protein
Synechocystis sp. PCC 6803 slr1295 -44 4.9 ATTGAGAATTACTTTTATT
Cyanothece sp. ATCC 51142 cce_2632 -20 4.8 ATCAATAATAATTTTCAAT
Cyanothece sp. PCC 8801 PCC8801_1443 -90 4 ATTAGGAATAATTAGCAAC
Position: -100
Score: 3
Sequence: CTTTCCGTTCATTCCCATT
Locus tag: RS9916_33552
RS9916_33552 -100 3 CTTTCCGTTCATTCCCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ctaA
Ortholog function: Heme A synthase
Cyanothece sp. PCC 8801 PCC8801_0256 -185 2.2 TTTTATTAACTTATGTAAA
Microcystis aeruginosa NIES-843 MAE_22920 -282 2.5 TCTTTTCAATATTTTTAAT
Trichodesmium erythraeum IMS101 Tery_1780 -278 3.5 ATTGTTAAAATTATGAAAT
-167 3.3 ATTAAAAAAAAATTTAAAA
Synechococcus elongatus PCC 7942 Synpcc7942_2601 -158 4.3 GATGACAATATTTTTCGAT
Prochlorococcus marinus str. MIT 9313 PMT1340 -30 2.6 ATTTAAATTATTTTATTGT
Position: -194
Score: 2.9
Sequence: CATGAGAAACGTAAACACC
Locus tag: RS9916_29069
RS9916_29069 -194 2.9 CATGAGAAACGTAAACACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcF
Ortholog function: Allophycocyanin, beta subunit
Synechococcus sp. PCC 7002 SYNPCC7002_A1631 -257 3.3 TTTTATTATTTTTTTTAAA
Cyanothece sp. ATCC 51142 cce_1944 -151 4.4 ATTGCTAAAATCTATAATT
Cyanothece sp. PCC 7425 Cyan7425_1838 -245 3 TTTTATATTATCTTTTAAC
Thermosynechococcus elongatus BP-1 null -157 3.1 AATTATGAACTTTTGTAAT
Position: -74
Score: 3.3
Sequence: GTTGTGTCAGATCATCATT
Position: -1
Score: 4.1
Sequence: AATGACAACAACTCTCACG
Locus tag: RS9916_27364
RS9916_27364 -74 3.3 GTTGTGTCAGATCATCATT
-1 4.1 AATGACAACAACTCTCACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlL
Ortholog function: Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A2347 -126 3.6 TTTTATAAAAACTCTAAGT
Synechocystis sp. PCC 6803 slr0749 -173 3.3 ATTTTATTTTTGTCTCAAT
Cyanothece sp. PCC 8801 PCC8801_0791 -242 2.7 ATTTAGTAAATTTTAAAGT
Microcystis aeruginosa NIES-843 MAE_16230 -150 2.8 ATTTATATAATTTTTAAGC
Thermosynechococcus elongatus BP-1 null -211 2.8 TTTTGTATTTTTGTTTAAT