Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcA regulog to Synechococcus sp. RS9916

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus sp. RS9916
Orthologous TF(s) RS9916_39216
Regulated genes 9
Built upon 228 sites [see more]
Predicted regulatory interactions in Synechococcus sp. RS9916
Locus tag Position Score Sequence
Position: -94
Score: 4.2
Sequence: TGTTCCTGTTGATACA
Locus tag: RS9916_37132
RS9916_37132 -94 4.2 TGTTCCTGTTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, substrate-binding protein
Prochlorococcus marinus str. MIT 9313 PMT2229 -146 4 TGTTGCAACAGCTACC
-95 4.7 TGTATCATTCACTACA
Synechococcus sp. WH 8102 SYNW2442 -118 4 TGTTGCAACAGCTACC
Position: -79
Score: 3.6
Sequence: TGTGCCTGCTGATACA
Locus tag: RS9916_29064
RS9916_29064 -79 3.6 TGTGCCTGCTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002 SYNPCC7002_A1630 -125 3.5 TGTgACccAgacTACA
Synechocystis sp. PCC 6803 slr1756 -98 4.3 GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142 cce_4432 -89 4.5 AGTATCCAATTATACA
-30 4 TGTATATATTGAAACC
Cyanothece sp. PCC 8801 PCC8801_0808 -92 4 CGTATCATGGTATACA
Cyanothece sp. PCC 7425 Cyan7425_1839 -221 4.9 TGTAACTCATGATACA
Microcystis aeruginosa NIES-843 MAE_19270 -92 4.7 TGTATCgaAaaATACA
Nostoc sp. PCC 7120 alr2328 -142 4.8 TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_3834 -250 4 CGTAACACCCGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_2156 -194 4.8 TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313 PMT0601 -79 4.2 GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1363 -138 4.3 CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421 gvip146 -116 4 CGTATCTCAGACTACA