Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Lyngbya sp. PCC 8106

Reference regulog properties
Source regulog: Crp - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process:
Effector: Cyclic 3',5'-AMP
Phylum: Cyanobacteria
Propagated regulon:
Target genome Lyngbya sp. PCC 8106
Orthologous TF(s) L8106_20790
Regulated genes 17
Built upon 106 sites [see more]
Predicted regulatory interactions in Lyngbya sp. PCC 8106
Locus tag Position Score Sequence
Position: 21
Score: 4.3
Sequence: AGTGACAAGGTTCACA
Locus tag: L8106_11067
L8106_11067 21 4.3 AGTGACAAGGTTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifX
Ortholog function: Nitrogen fixation protein
Cyanothece sp. PCC 8801 PCC8801_1790 21 4.3 AGTGACAATGTTCATA
Nostoc sp. PCC 7120 all1436 21 4.3 AGTGACAGAATTCATA
Trichodesmium erythraeum IMS101 Tery_4140 21 4.3 ACTGATTTTATTCATA
Position: -294
Score: 3.1
Sequence: GGAAAAATAAATCACC
Locus tag: L8106_11122
L8106_11122 -294 3.1 GGAAAAATAAATCACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifB
Ortholog function: FeMo nitrogenase cofactor biosynthesis protein
Cyanothece sp. ATCC 51142 cce_0554 -123 4 GGTGGTATAAATGACA
Cyanothece sp. PCC 7425 Cyan7425_2361 -40 3.9 ACTGTTATAAAGCACC
Nostoc sp. PCC 7120 all1517 -299 3.1 ACTGCTATAAATCTTA
Trichodesmium erythraeum IMS101 Tery_4133 -356 3.7 TATGACTTATAGCATG
Position: -63
Score: 3.5
Sequence: AGAAACCTAAATCATA
Position: -1
Score: 4.1
Sequence: GGTGATTAAAGTCGCA
Locus tag: L8106_20523
L8106_20523 -63 3.5 AGAAACCTAAATCATA
-1 4.1 GGTGATTAAAGTCGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gap2
Ortholog function: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59)
Synechococcus sp. PCC 7002 SYNPCC7002_A0106 -65 3.7 TATGATTGGGGTCATC
Cyanothece sp. PCC 8801 PCC8801_2557 -31 4 ATTGAGCTAAAGCATA
Nostoc sp. PCC 7120 all5062 -56 3.8 TATGATTGGGGTCAAA
-1 4.1 TGTGATTAGAGTCGCA
Trichodesmium erythraeum IMS101 Tery_4030 -410 3.6 TATGATAATTCTCAAG