Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcA regulog to Prochlorococcus marinus str. MIT 9303

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Prochlorococcus marinus str. MIT 9303
Orthologous TF(s) null
Regulated genes 9
Built upon 228 sites [see more]
Predicted regulatory interactions in Prochlorococcus marinus str. MIT 9303
Locus tag Position Score Sequence
Position: -79
Score: 4
Sequence: GGTACCTGCTGCTACA
Locus tag: null
null -79 4 GGTACCTGCTGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002 SYNPCC7002_A1630 -125 3.5 TGTgACccAgacTACA
Synechocystis sp. PCC 6803 slr1756 -98 4.3 GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142 cce_4432 -89 4.5 AGTATCCAATTATACA
-30 4 TGTATATATTGAAACC
Cyanothece sp. PCC 8801 PCC8801_0808 -92 4 CGTATCATGGTATACA
Cyanothece sp. PCC 7425 Cyan7425_1839 -221 4.9 TGTAACTCATGATACA
Microcystis aeruginosa NIES-843 MAE_19270 -92 4.7 TGTATCgaAaaATACA
Nostoc sp. PCC 7120 alr2328 -142 4.8 TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_3834 -250 4 CGTAACACCCGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_2156 -194 4.8 TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313 PMT0601 -79 4.2 GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1363 -138 4.3 CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421 gvip146 -116 4 CGTATCTCAGACTACA
Position: -136
Score: 3.6
Sequence: CGTCACCATTGCTACA
Locus tag: null
null -136 3.6 CGTCACCATTGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcA
Ortholog function: Global nitrogen transcription regulator, Crp family
Synechococcus sp. PCC 7002 SYNPCC7002_A1675 -177 3.9 TGAAGCAAAAAGTACA
Cyanothece sp. PCC 7425 Cyan7425_0755 -173 4.8 TGTATCCGATGATACA
Nostoc sp. PCC 7120 alr4392 -151 3.7 GGTATCATTATGAACA
-111 3.7 AGTATAGGAAAGTACA
Synechococcus elongatus PCC 7942 Synpcc7942_0127 -157 4.7 AGTAGCAGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1799 -181 4.7 TGTAGCTCCTGCTACA
Gloeobacter violaceus PCC 7421 gvip454 -77 3.9 AGTAGTCCCTAATACA
Position: -160
Score: 3.7
Sequence: TGTAACAGAATGAACT
Locus tag: null
null -160 3.7 TGTAACAGAATGAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002 SYNPCC7002_A2208 -52 3.7 GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803 sll0108 -189 4 AGTAGTAAATCATACA
-18 4.4 TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142 cce_3261 -152 3.5 TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801 PCC8801_1229 -264 5 TGTATTTTTTGATACA
-229 4.1 AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843 MAE_40010 -213 4.6 TGTATCAACGAATACA
Trichodesmium erythraeum IMS101 Tery_4477 -83 4.9 AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_0442 -151 4.1 TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313 PMT1853 -160 3.8 TGTAACAAAATGAACT
Synechococcus sp. WH 8102 SYNW0253 -100 4.2 TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1 amt1 -190 4.4 TGTATAACGTGATACA
Position: -210
Score: 4.1
Sequence: TGTAGCTTTGGTGACA
Locus tag: null
null -210 4.1 TGTAGCTTTGGTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1954
Ortholog function: putative two-component sensor histidine kinase
Synechococcus sp. PCC 7002 SYNPCC7002_A1954 -243 4.7 TGTAACAGGAGTTACA
Synechocystis sp. PCC 6803 slr1147 -214 4.7 TGTAATGATAGTTACA
Cyanothece sp. ATCC 51142 cce_3327 -210 4.7 TGTAGTCATAGTTACA
-46 4 TTTATTTTCTGTTACA
Synechococcus sp. WH 8102 SYNW0246 -143 4.1 TGTAACTTTGGTTGCA
Thermosynechococcus elongatus BP-1 tlr0195 -111 4.2 TGTAACCTATCTTACA
Position: -95
Score: 4.7
Sequence: TGTATCATTCACTACA
Locus tag: null
null -95 4.7 TGTATCATTCACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, substrate-binding protein
Prochlorococcus marinus str. MIT 9313 PMT2229 -146 4 TGTTGCAACAGCTACC
-95 4.7 TGTATCATTCACTACA
Synechococcus sp. WH 8102 SYNW2442 -118 4 TGTTGCAACAGCTACC
© 2009-2020 RegPrecise