Propagation of NtcA regulog to Prochlorococcus marinus str. MIT 9303
| Source regulog: | NtcA - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Nitrogen assimilation |
| Effector: | 2-oxoglutarate |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Prochlorococcus marinus str. MIT 9303 |
| Orthologous TF(s) | null |
| Regulated genes | 9 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -79
Score: 4 Sequence: GGTACCTGCTGCTACA
Locus tag: null
|
||||
| null | -79 | 4 | GGTACCTGCTGCTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: glutamine synthetase, type I | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1630 | -125 | 3.5 | TGTgACccAgacTACA |
| Synechocystis sp. PCC 6803 | slr1756 | -98 | 4.3 | GGTAGCGAAAAATACA |
| Cyanothece sp. ATCC 51142 | cce_4432 | -89 | 4.5 | AGTATCCAATTATACA |
| -30 | 4 | TGTATATATTGAAACC | ||
| Cyanothece sp. PCC 8801 | PCC8801_0808 | -92 | 4 | CGTATCATGGTATACA |
| Cyanothece sp. PCC 7425 | Cyan7425_1839 | -221 | 4.9 | TGTAACTCATGATACA |
| Microcystis aeruginosa NIES-843 | MAE_19270 | -92 | 4.7 | TGTATCgaAaaATACA |
| Nostoc sp. PCC 7120 | alr2328 | -142 | 4.8 | TGTAACAAAGACTACA |
| Trichodesmium erythraeum IMS101 | Tery_3834 | -250 | 4 | CGTAACACCCGATACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2156 | -194 | 4.8 | TGTATCAgcTGTTACA |
| Prochlorococcus marinus str. MIT 9313 | PMT0601 | -79 | 4.2 | GGTACCTGTTGCTACA |
| Synechococcus sp. JA-3-3Ab | CYA_1363 | -138 | 4.3 | CGTATCAGAAACTACA |
| Gloeobacter violaceus PCC 7421 | gvip146 | -116 | 4 | CGTATCTCAGACTACA |
|
Position: -136
Score: 3.6 Sequence: CGTCACCATTGCTACA
Locus tag: null
|
||||
| null | -136 | 3.6 | CGTCACCATTGCTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ntcA | ||||
| Ortholog function: Global nitrogen transcription regulator, Crp family | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1675 | -177 | 3.9 | TGAAGCAAAAAGTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_0755 | -173 | 4.8 | TGTATCCGATGATACA |
| Nostoc sp. PCC 7120 | alr4392 | -151 | 3.7 | GGTATCATTATGAACA |
| -111 | 3.7 | AGTATAGGAAAGTACA | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_0127 | -157 | 4.7 | AGTAGCAGTTGCTACA |
| Synechococcus sp. JA-3-3Ab | CYA_1799 | -181 | 4.7 | TGTAGCTCCTGCTACA |
| Gloeobacter violaceus PCC 7421 | gvip454 | -77 | 3.9 | AGTAGTCCCTAATACA |
|
Position: -160
Score: 3.7 Sequence: TGTAACAGAATGAACT
Locus tag: null
|
||||
| null | -160 | 3.7 | TGTAACAGAATGAACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amt1 | ||||
| Ortholog function: ammonium transporter | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2208 | -52 | 3.7 | GGTTACTTCTGCTACC |
| Synechocystis sp. PCC 6803 | sll0108 | -189 | 4 | AGTAGTAAATCATACA |
| -18 | 4.4 | TGTAGATTAAAGTACA | ||
| Cyanothece sp. ATCC 51142 | cce_3261 | -152 | 3.5 | TGTtAaggtTGTaACA |
| Cyanothece sp. PCC 8801 | PCC8801_1229 | -264 | 5 | TGTATTTTTTGATACA |
| -229 | 4.1 | AGTAATAAAAAAAACA | ||
| Microcystis aeruginosa NIES-843 | MAE_40010 | -213 | 4.6 | TGTATCAACGAATACA |
| Trichodesmium erythraeum IMS101 | Tery_4477 | -83 | 4.9 | AGTAGCATTTGATACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_0442 | -151 | 4.1 | TGTTACATCGATTACA |
| Prochlorococcus marinus str. MIT 9313 | PMT1853 | -160 | 3.8 | TGTAACAAAATGAACT |
| Synechococcus sp. WH 8102 | SYNW0253 | -100 | 4.2 | TGTATCAATTAACACA |
| Thermosynechococcus elongatus BP-1 | amt1 | -190 | 4.4 | TGTATAACGTGATACA |
|
Position: -210
Score: 4.1 Sequence: TGTAGCTTTGGTGACA
Locus tag: null
|
||||
| null | -210 | 4.1 | TGTAGCTTTGGTGACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SYNPCC7002_A1954 | ||||
| Ortholog function: putative two-component sensor histidine kinase | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1954 | -243 | 4.7 | TGTAACAGGAGTTACA |
| Synechocystis sp. PCC 6803 | slr1147 | -214 | 4.7 | TGTAATGATAGTTACA |
| Cyanothece sp. ATCC 51142 | cce_3327 | -210 | 4.7 | TGTAGTCATAGTTACA |
| -46 | 4 | TTTATTTTCTGTTACA | ||
| Synechococcus sp. WH 8102 | SYNW0246 | -143 | 4.1 | TGTAACTTTGGTTGCA |
| Thermosynechococcus elongatus BP-1 | tlr0195 | -111 | 4.2 | TGTAACCTATCTTACA |
|
Position: -95
Score: 4.7 Sequence: TGTATCATTCACTACA
Locus tag: null
|
||||
| null | -95 | 4.7 | TGTATCATTCACTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: urtA | ||||
| Ortholog function: Urea ABC transporter, substrate-binding protein | ||||
| Prochlorococcus marinus str. MIT 9313 | PMT2229 | -146 | 4 | TGTTGCAACAGCTACC |
| -95 | 4.7 | TGTATCATTCACTACA | ||
| Synechococcus sp. WH 8102 | SYNW2442 | -118 | 4 | TGTTGCAACAGCTACC |