Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Prochlorococcus marinus str. NATL2A

Reference regulog properties
Source regulog: Fur - Cyanobacteria
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Cyanobacteria
Propagated regulon:
Target genome Prochlorococcus marinus str. NATL2A
Orthologous TF(s) PMN2A_0077
Regulated genes 9
Built upon 167 sites [see more]
Predicted regulatory interactions in Prochlorococcus marinus str. NATL2A
Locus tag Position Score Sequence
Position: -175
Score: 4.4
Sequence: TTTGAAAATTATTTTTCTT
Position: -169
Score: 3
Sequence: AATTATTTTTCTTGGCTTT
Position: -152
Score: 3.3
Sequence: TTTCAAATCTAAAATAATT
Position: -146
Score: 3.5
Sequence: ATCTAAAATAATTGACAAA
Position: -136
Score: 3.9
Sequence: ATTGACAAACTTTTTAAAA
Position: -128
Score: 3.3
Sequence: ACTTTTTAAAATTATAATT
Position: -125
Score: 3.9
Sequence: TTTTAAAATTATAATTTTT
Position: -48
Score: 2.9
Sequence: ATATATAGTTTATTTCAGT
Position: -32
Score: 3.2
Sequence: AGTAAAATTTGTTCTGAGT
Position: -1
Score: 3
Sequence: TATGGAAACCACTAGTTTT
Locus tag: PMN2A_1693
PMN2A_1693 -175 4.4 TTTGAAAATTATTTTTCTT
-169 3 AATTATTTTTCTTGGCTTT
-152 3.3 TTTCAAATCTAAAATAATT
-146 3.5 ATCTAAAATAATTGACAAA
-136 3.9 ATTGACAAACTTTTTAAAA
-128 3.3 ACTTTTTAAAATTATAATT
-125 3.9 TTTTAAAATTATAATTTTT
-48 2.9 ATATATAGTTTATTTCAGT
-32 3.2 AGTAAAATTTGTTCTGAGT
-1 3 TATGGAAACCACTAGTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbM
Ortholog function: Photosystem II reaction center M protein
Cyanothece sp. ATCC 51142 cce_0893 -29 3 TTTCTTATAATTTCTTAAC
Cyanothece sp. PCC 8801 PCC8801_2861 -49 3.8 ATTGTAAAAAAATATTAAC
Nostoc sp. PCC 7120 asl0883 -90 3.5 ATTCTTAATTTTTTGTAAT
Synechococcus sp. JA-3-3Ab CYA_0642 -92 2.8 ATTAAAAATATGATTTAAA
Position: -1
Score: 3.3
Sequence: CATGACTATTTCACTCAAA
Locus tag: PMN2A_1776
PMN2A_1776 -1 3.3 CATGACTATTTCACTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxA
Ortholog function: Cytochrome c oxidase, subunit I
Cyanothece sp. ATCC 51142 cce_1976 -136 3.7 AATTTCAATCAATTTCAAT
Cyanothece sp. PCC 8801 PCC8801_0568 -152 2.7 TTTGTTTATTATTTGTTAC
Microcystis aeruginosa NIES-843 MAE_22940 -216 2.5 TTTTAGATATTCTTTAGAT
Nostoc sp. PCC 7120 alr0951 -134 3.7 TTTACTCAAGATTATTAAT
Position: -156
Score: 3.6
Sequence: ATGGGCAAAAGTAATTAAT
Position: -116
Score: 2.9
Sequence: AAGATGAATAATTTTTTTT
Position: -113
Score: 3.3
Sequence: ATGAATAATTTTTTTTAAA
Position: -103
Score: 3.1
Sequence: TTTTTTAAAGAGAATCTTT
Position: -101
Score: 3.2
Sequence: TTTTAAAGAGAATCTTTAT
Position: -97
Score: 3.4
Sequence: AAAGAGAATCTTTATGTTC
Position: -20
Score: 2.9
Sequence: CTTGATGGATTTTTGCATA
Locus tag: PMN2A_1778
PMN2A_1778 -156 3.6 ATGGGCAAAAGTAATTAAT
-116 2.9 AAGATGAATAATTTTTTTT
-113 3.3 ATGAATAATTTTTTTTAAA
-103 3.1 TTTTTTAAAGAGAATCTTT
-101 3.2 TTTTAAAGAGAATCTTTAT
-97 3.4 AAAGAGAATCTTTATGTTC
-20 2.9 CTTGATGGATTTTTGCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ctaA
Ortholog function: Heme A synthase
Cyanothece sp. PCC 8801 PCC8801_0256 -185 2.2 TTTTATTAACTTATGTAAA
Microcystis aeruginosa NIES-843 MAE_22920 -282 2.5 TCTTTTCAATATTTTTAAT
Trichodesmium erythraeum IMS101 Tery_1780 -278 3.5 ATTGTTAAAATTATGAAAT
-167 3.3 ATTAAAAAAAAATTTAAAA
Synechococcus elongatus PCC 7942 Synpcc7942_2601 -158 4.3 GATGACAATATTTTTCGAT
Prochlorococcus marinus str. MIT 9313 PMT1340 -30 2.6 ATTTAAATTATTTTATTGT
Position: -129
Score: 3
Sequence: GTTCAATATATATATGTTT
Position: -124
Score: 3.9
Sequence: ATATATATATGTTTTCATT
Position: -90
Score: 3.1
Sequence: AATGCCAAATGTATCGAAT
Position: -78
Score: 3.2
Sequence: ATCGAATTCGCTAAACATT
Position: -1
Score: 3
Sequence: AATGACTTCGACAATAACT
Position: 5
Score: 3.4
Sequence: TTCGACAATAACTCGTAAG
Locus tag: PMN2A_1872
PMN2A_1872 -129 3 GTTCAATATATATATGTTT
-124 3.9 ATATATATATGTTTTCATT
-90 3.1 AATGCCAAATGTATCGAAT
-78 3.2 ATCGAATTCGCTAAACATT
-1 3 AATGACTTCGACAATAACT
5 3.4 TTCGACAATAACTCGTAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlL
Ortholog function: Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A2347 -126 3.6 TTTTATAAAAACTCTAAGT
Synechocystis sp. PCC 6803 slr0749 -173 3.3 ATTTTATTTTTGTCTCAAT
Cyanothece sp. PCC 8801 PCC8801_0791 -242 2.7 ATTTAGTAAATTTTAAAGT
Microcystis aeruginosa NIES-843 MAE_16230 -150 2.8 ATTTATATAATTTTTAAGC
Thermosynechococcus elongatus BP-1 null -211 2.8 TTTTGTATTTTTGTTTAAT
Position: -348
Score: 3.4
Sequence: TTCGAAAGTCCTTATTTAT
Position: -289
Score: 3.4
Sequence: ATTCGATACATTTGGCATT
Position: -279
Score: 2.9
Sequence: TTTGGCATTAAATATATGT
Position: -255
Score: 4
Sequence: AATGAAAACATATATATAT
Position: -225
Score: 3.1
Sequence: TATGCGTATTTTTACTCAT
Position: -99
Score: 2.9
Sequence: AACTAAAAAGTAACTAAAT
Position: -32
Score: 3.2
Sequence: TTTGAATATATACATGTAT
Locus tag: PMN2A_1873
PMN2A_1873 -348 3.4 TTCGAAAGTCCTTATTTAT
-289 3.4 ATTCGATACATTTGGCATT
-279 2.9 TTTGGCATTAAATATATGT
-255 4 AATGAAAACATATATATAT
-225 3.1 TATGCGTATTTTTACTCAT
-99 2.9 AACTAAAAAGTAACTAAAT
-32 3.2 TTTGAATATATACATGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlN
Ortholog function: Light-independent protochlorophyllide reductase, subunit N
Synechococcus sp. PCC 7002 SYNPCC7002_A2345 -126 3.6 TTTTATAAAAACTCTAAGT
Cyanothece sp. ATCC 51142 cce_4534 -118 3.7 TTTGAGTTTTATTTAAAAT
Cyanothece sp. PCC 8801 PCC8801_0789 -242 2.7 ATTTAGTAAATTTTAAAGT
Microcystis aeruginosa NIES-843 MAE_16250 -107 2.8 ATTAAGTAATTCTTTATAT
Thermosynechococcus elongatus BP-1 null -211 2.8 TTTTGTATTTTTGTTTAAT
Position: -105
Score: 3
Sequence: TTTTTGCATTATTATATTT
Locus tag: PMN2A_0380
PMN2A_0380 -105 3 TTTTTGCATTATTATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlH
Ortholog function: Protoporphyrin IX magnesium chelatase, subunit H
Synechococcus sp. PCC 7002 SYNPCC7002_A1018 -57 3.8 ATAGTTATAAATTTTTAAT
Cyanothece sp. ATCC 51142 cce_4358 -183 2.7 AATAAATAATTTTTGTAAA
-138 2.3 ATTTGTCAATATTTGTAAC
Cyanothece sp. PCC 8801 PCC8801_4320 -186 2.3 ATTTGTCAATATTTGTAAC
Microcystis aeruginosa NIES-843 MAE_12190 -247 2.8 ATTAAATATTAATTTTTGT
Nostoc sp. PCC 7120 all4365 -272 2.9 GTTTTTTATTTTTTTCATC
-232 3 AATATTAATTTTTCTTTAC
Trichodesmium erythraeum IMS101 Tery_3224 -65 3 GTTTAAAATTTTTTGATAT
Position: -195
Score: 3
Sequence: AATGAAATTGGGAAGCACA
Position: -146
Score: 3
Sequence: TTTGACAATTAATAAGTAG
Position: -126
Score: 3.3
Sequence: AATAAAAAAAATTGATTTT
Position: -118
Score: 3.2
Sequence: AAATTGATTTTATCTCATT
Locus tag: PMN2A_0767
PMN2A_0767 -195 3 AATGAAATTGGGAAGCACA
-146 3 TTTGACAATTAATAAGTAG
-126 3.3 AATAAAAAAAATTGATTTT
-118 3.2 AAATTGATTTTATCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbD
Ortholog function: Photosystem II, reaction center protein
Synechocystis sp. PCC 6803 sll0849 -298 3.3 AATGTAAAATATTTGCTAA
Cyanothece sp. ATCC 51142 cce_0660 -298 3.4 ATTGTAAATTTTTTGCTAA
Cyanothece sp. PCC 7425 Cyan7425_5031 -91 3.1 GTTTATAAACTTTCGTAAA
Microcystis aeruginosa NIES-843 MAE_41160 -274 2.9 ATTTGTAATTTTTTGCTAA
Synechococcus sp. JA-3-3Ab CYA_2647 -106 3 TTTATTAATTTTTCGTAAG
Position: -289
Score: 3.2
Sequence: AAGGCAAAGATTTACTAAT
Position: -237
Score: 3
Sequence: AATAAAAGTGTAGAACATT
Locus tag: PMN2A_1082
PMN2A_1082 -289 3.2 AAGGCAAAGATTTACTAAT
-237 3 AATAAAAGTGTAGAACATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: psaA
Ortholog function: Photosystem I P700 chlorophyll A apoprotein A1
Synechococcus sp. PCC 7002 SYNPCC7002_A1961 -206 3.4 AGTTTTAAATATTGTTAAT
Cyanothece sp. ATCC 51142 cce_0989 -205 3.4 AATTTTAATTATTGTTAAG
Microcystis aeruginosa NIES-843 MAE_47560 -297 3.2 ATTAATAAACTTTTGTAAA
Nostoc sp. PCC 7120 alr5154 -177 3.4 ATTTTGAATTATTGTTAAA
Trichodesmium erythraeum IMS101 Tery_4669 -80 4 ATTGATAATTCTTTACAAC
Synechococcus elongatus PCC 7942 Synpcc7942_2049 -296 3.3 TCTTTGAATTATTGTTAAT
Gloeobacter violaceus PCC 7421 gvip470 -195 2.2 TTTTTAAAAATTGTTAAGT
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