Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Cyanothece sp. ATCC 51142

Reference regulog properties
Source regulog: Crp - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process:
Effector: Cyclic 3',5'-AMP
Phylum: Cyanobacteria
Propagated regulon:
Target genome Cyanothece sp. ATCC 51142
Orthologous TF(s) cce_1423
Regulated genes 21
Built upon 106 sites [see more]
Predicted regulatory interactions in Cyanothece sp. ATCC 51142
Locus tag Position Score Sequence
Position: -138
Score: 4.6
Sequence: GGTGATTTAAGTCATC
Locus tag: cce_0244
cce_0244 -138 4.6 GGTGATTTAAGTCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: cce_0244
Ortholog function: Conserved hypothetical protein
Cyanothece sp. ATCC 51142 cce_0244 -138 4.6 GGTGATTTAAGTCATC
Nostoc sp. PCC 7120 all1210 -54 4.2 GTTGATTTAATTCATA
Trichodesmium erythraeum IMS101 Tery_3463 -345 4 AATGATCAAAATTATA
Position: -233
Score: 3.2
Sequence: TTTAATTAGGCTCAAA
Position: -123
Score: 4
Sequence: GGTGGTATAAATGACA
Locus tag: cce_0554
cce_0554 -233 3.2 TTTAATTAGGCTCAAA
-123 4 GGTGGTATAAATGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifB
Ortholog function: FeMo nitrogenase cofactor biosynthesis protein
Cyanothece sp. ATCC 51142 cce_0554 -123 4 GGTGGTATAAATGACA
Cyanothece sp. PCC 7425 Cyan7425_2361 -40 3.9 ACTGTTATAAAGCACC
Nostoc sp. PCC 7120 all1517 -299 3.1 ACTGCTATAAATCTTA
Trichodesmium erythraeum IMS101 Tery_4133 -356 3.7 TATGACTTATAGCATG
Position: 12
Score: 4.2
Sequence: ACTGATAATAATCCCA
Locus tag: cce_0567
cce_0567 12 4.2 ACTGATAATAATCCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifK2
Ortholog function: Nitrogen fixation protein
Cyanothece sp. ATCC 51142 cce_0567 12 4.2 ACTGATAATAATCCCA
Cyanothece sp. PCC 8801 PCC8801_1792 21 4.3 AGTGACAATGTTCATA
Position: -95
Score: 3.9
Sequence: TGTTGTCAAAGTCACA
Locus tag: cce_0683
cce_0683 -95 3.9 TGTTGTCAAAGTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufR
Ortholog function: Iron-sulfur cluster biogenesis regulator, DeoR family
Cyanothece sp. ATCC 51142 cce_0683 -95 3.9 TGTTGTCAAAGTCACA
Cyanothece sp. PCC 8801 PCC8801_0414 -41 3.8 GTTGATTTAAGTCCTA
Microcystis aeruginosa NIES-843 MAE_23100 -128 3.7 TGTTGTCAAAGTCACG
Nostoc sp. PCC 7120 all2491 -42 3.7 TGTTGTCAAAGTCAAA
Prochlorococcus marinus str. MIT 9313 PMT1607 -71 3.9 CCTGATCTAAGGCAAC
Position: -23
Score: 3.6
Sequence: CATGATTTTATTCAGA
Locus tag: cce_0800
cce_0800 -23 3.6 CATGATTTTATTCAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Cyanothece sp. ATCC 51142 cce_0800 -23 3.6 CATGATTTTATTCAGA
Cyanothece sp. PCC 8801 PCC8801_3887 -203 4.3 GGTGACAGAAATCAAA
Microcystis aeruginosa NIES-843 MAE_02800 -44 3.6 TTTGATTATGATCGCC
Nostoc sp. PCC 7120 all2561 -44 4.4 AATGATATAGCTCACA
Synechococcus elongatus PCC 7942 Synpcc7942_2079 -63 4.2 TGTGATTAAGCACACA
Position: -78
Score: 3.7
Sequence: TGTGATAAAAAAGCCA
Locus tag: cce_1977
cce_1977 -78 3.7 TGTGATAAAAAAGCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxB
Ortholog function: Cytochrome c oxidase subunit 2 (EC 1.9.3.1)
Cyanothece sp. ATCC 51142 cce_1977 -78 3.7 TGTGATAAAAAAGCCA
Position: -1
Score: 3.8
Sequence: GGTGAATTTAAGCATG
Locus tag: cce_2365
cce_2365 -1 3.8 GGTGAATTTAAGCATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: sll1708
Ortholog function: Two component transcriptional regulator, LuxR family
Synechocystis sp. PCC 6803 sll1708 -77 4.4 CGTGATAGTAATCACC
Cyanothece sp. ATCC 51142 cce_2365 -1 3.8 GGTGAATTTAAGCATG
Position: -72
Score: 4.1
Sequence: TGTGAGTTTTGTCACG
Locus tag: cce_2512
cce_2512 -72 4.1 TGTGAGTTTTGTCACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: slr1503
Ortholog function: Predicted aldo/keto reductase
Synechocystis sp. PCC 6803 slr1503 -1 3.8 TATGACAATTAGCACC
Cyanothece sp. ATCC 51142 cce_2512 -72 4.1 TGTGAGTTTTGTCACG
Cyanothece sp. PCC 8801 PCC8801_0019 -35 4.6 TGTGAGCTAAATCACT
Trichodesmium erythraeum IMS101 Tery_2155 -99 3.9 CATGGTTTTAATCATA
Position: 5
Score: 4.1
Sequence: AATGTTTAAAGTCACC
Locus tag: cce_2911
cce_2911 5 4.1 AATGTTTAAAGTCACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcC
Ortholog function: Phycobilisome linker polypeptide, allophycocyanin-associated
Cyanothece sp. ATCC 51142 cce_2911 5 4.1 AATGTTTAAAGTCACC
Cyanothece sp. PCC 8801 PCC8801_2788 5 3.9 GATGTTTAAAGTCACC
Microcystis aeruginosa NIES-843 MAE_10240 5 4.1 GATGTTCAAAATCACC
Trichodesmium erythraeum IMS101 Tery_3647 5 4.2 AATGTTTAAGATCACA
Synechococcus sp. JA-3-3Ab CYA_2225 5 3.7 CATGTTTAAGATCACG
Synechococcus sp. WH 8102 SYNW0483 5 3.9 GTTGTTCAAAGTCACC
Thermosynechococcus elongatus BP-1 null -233 3.6 CATGAAAGAAGTCACC
Position: -137
Score: 3.8
Sequence: TTTGACTTAAATAACC
Locus tag: cce_3288
cce_3288 -137 3.8 TTTGACTTAAATAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0687
Ortholog function: Conserved hypothetical protein
Synechocystis sp. PCC 6803 slr0013 -56 4.1 TTTGATCAAAGTCCTA
Cyanothece sp. ATCC 51142 cce_3288 -137 3.8 TTTGACTTAAATAACC
Cyanothece sp. PCC 8801 PCC8801_0091 -153 3.8 TTTGATCTCGATCATT
Prochlorococcus marinus str. MIT 9313 PMT0719 17 3.7 TTTGAAACAATTCACC
Position: -48
Score: 4.4
Sequence: TCTGACTGAAATCACA
Locus tag: cce_3647
cce_3647 -48 4.4 TCTGACTGAAATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1600
Ortholog function: Conserved hypothetical protein
Cyanothece sp. ATCC 51142 cce_3647 -48 4.4 TCTGACTGAAATCACA
Position: -215
Score: 4
Sequence: TGTTAACTAGATCACA
Locus tag: cce_3687
cce_3687 -215 4 TGTTAACTAGATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rlpA
Ortholog function: Predicted lipoprotein A
Cyanothece sp. ATCC 51142 cce_3687 -215 4 TGTTAACTAGATCACA
Cyanothece sp. PCC 8801 PCC8801_1079 -239 3.8 GGTGAAATTAGGCAAA
Cyanothece sp. PCC 7425 Cyan7425_3340 -328 4.2 CGTGATTCGGATCACA
Thermosynechococcus elongatus BP-1 tlr0333 -317 4.8 GGTGATCTGAGTCACA
Position: -265
Score: 4.5
Sequence: TGTGATTATTATCAAA
Position: -104
Score: 4.4
Sequence: TGTGATTATTATCAAC
Locus tag: cce_4329
cce_4329 -265 4.5 TGTGATTATTATCAAA
-104 4.4 TGTGATTATTATCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppa
Ortholog function: inorganic pyrophosphatase
Cyanothece sp. ATCC 51142 cce_4329 -265 4.5 TGTGATTATTATCAAA
-104 4.4 TGTGATTATTATCAAC
Cyanothece sp. PCC 8801 PCC8801_2042 -177 4 TGTGATACTCATCATA
Cyanothece sp. PCC 7425 Cyan7425_1645 -273 3.7 ACTGATTAAGGGCACT
Nostoc sp. PCC 7120 all3570 -160 3.7 TGTGATATTTTTCCAC
Trichodesmium erythraeum IMS101 Tery_1519 -237 3.9 AATGATAGAGTTCACG
Position: -83
Score: 5.1
Sequence: TGTGATCTTGATCACA
Locus tag: cce_4424
cce_4424 -83 5.1 TGTGATCTTGATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: murF
Ortholog function: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10)
Synechococcus sp. PCC 7002 SYNPCC7002_A2693 -92 4.1 GGTGACAAATATCACT
Synechocystis sp. PCC 6803 slr1351 -101 5 GGTGATCTAGATCACA
Cyanothece sp. ATCC 51142 cce_4424 -83 5.1 TGTGATCTTGATCACA
Cyanothece sp. PCC 8801 PCC8801_2372 -74 4.8 AGTGATCTGGGTCACA
Synechococcus sp. JA-3-3Ab CYA_0077 -32 3.8 ATTGACTAGAGTCATG
Thermosynechococcus elongatus BP-1 null 3 4.2 ATTGATCTAAAACAAC