Propagation of Crp regulog to Cyanothece sp. ATCC 51142

Reference regulog properties
Source regulog:	Crp - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	repressor (activator)
Biological process:
Effector:	Cyclic 3',5'-AMP
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Cyanothece sp. ATCC 51142
Orthologous TF(s)	cce_1423
Regulated genes	21

Built upon 106 sites [see more]

Predicted regulatory interactions in *Cyanothece sp. ATCC 51142*
	Locus tag	Position	Score	Sequence
Position: -138 Score: 4.6 Sequence: GGTGATTTAAGTCATC Locus tag: cce_0244
	cce_0244	-138	4.6	GGTGATTTAAGTCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: cce_0244
Ortholog function: Conserved hypothetical protein
Cyanothece sp. ATCC 51142	cce_0244	-138	4.6	GGTGATTTAAGTCATC
Nostoc sp. PCC 7120	all1210	-54	4.2	GTTGATTTAATTCATA
Trichodesmium erythraeum IMS101	Tery_3463	-345	4	AATGATCAAAATTATA

Position: -233 Score: 3.2 Sequence: TTTAATTAGGCTCAAA Position: -123 Score: 4 Sequence: GGTGGTATAAATGACA Locus tag: cce_0554
	cce_0554	-233	3.2	TTTAATTAGGCTCAAA
		-123	4	GGTGGTATAAATGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifB
Ortholog function: FeMo nitrogenase cofactor biosynthesis protein
Cyanothece sp. ATCC 51142	cce_0554	-123	4	GGTGGTATAAATGACA
Cyanothece sp. PCC 7425	Cyan7425_2361	-40	3.9	ACTGTTATAAAGCACC
Nostoc sp. PCC 7120	all1517	-299	3.1	ACTGCTATAAATCTTA
Trichodesmium erythraeum IMS101	Tery_4133	-356	3.7	TATGACTTATAGCATG

Position: 12 Score: 4.2 Sequence: ACTGATAATAATCCCA Locus tag: cce_0567
	cce_0567	12	4.2	ACTGATAATAATCCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifK2
Ortholog function: Nitrogen fixation protein
Cyanothece sp. ATCC 51142	cce_0567	12	4.2	ACTGATAATAATCCCA
Cyanothece sp. PCC 8801	PCC8801_1792	21	4.3	AGTGACAATGTTCATA

Position: -95 Score: 3.9 Sequence: TGTTGTCAAAGTCACA Locus tag: cce_0683
	cce_0683	-95	3.9	TGTTGTCAAAGTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufR
Ortholog function: Iron-sulfur cluster biogenesis regulator, DeoR family
Cyanothece sp. ATCC 51142	cce_0683	-95	3.9	TGTTGTCAAAGTCACA
Cyanothece sp. PCC 8801	PCC8801_0414	-41	3.8	GTTGATTTAAGTCCTA
Microcystis aeruginosa NIES-843	MAE_23100	-128	3.7	TGTTGTCAAAGTCACG
Nostoc sp. PCC 7120	all2491	-42	3.7	TGTTGTCAAAGTCAAA
Prochlorococcus marinus str. MIT 9313	PMT1607	-71	3.9	CCTGATCTAAGGCAAC

Position: -23 Score: 3.6 Sequence: CATGATTTTATTCAGA Locus tag: cce_0800
	cce_0800	-23	3.6	CATGATTTTATTCAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Cyanothece sp. ATCC 51142	cce_0800	-23	3.6	CATGATTTTATTCAGA
Cyanothece sp. PCC 8801	PCC8801_3887	-203	4.3	GGTGACAGAAATCAAA
Microcystis aeruginosa NIES-843	MAE_02800	-44	3.6	TTTGATTATGATCGCC
Nostoc sp. PCC 7120	all2561	-44	4.4	AATGATATAGCTCACA
Synechococcus elongatus PCC 7942	Synpcc7942_2079	-63	4.2	TGTGATTAAGCACACA

Position: -78 Score: 3.7 Sequence: TGTGATAAAAAAGCCA Locus tag: cce_1977
	cce_1977	-78	3.7	TGTGATAAAAAAGCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxB
Ortholog function: Cytochrome c oxidase subunit 2 (EC 1.9.3.1)
Cyanothece sp. ATCC 51142	cce_1977	-78	3.7	TGTGATAAAAAAGCCA

Position: -1 Score: 3.8 Sequence: GGTGAATTTAAGCATG Locus tag: cce_2365
	cce_2365	-1	3.8	GGTGAATTTAAGCATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: sll1708
Ortholog function: Two component transcriptional regulator, LuxR family
Synechocystis sp. PCC 6803	sll1708	-77	4.4	CGTGATAGTAATCACC
Cyanothece sp. ATCC 51142	cce_2365	-1	3.8	GGTGAATTTAAGCATG

Position: -72 Score: 4.1 Sequence: TGTGAGTTTTGTCACG Locus tag: cce_2512
	cce_2512	-72	4.1	TGTGAGTTTTGTCACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: slr1503
Ortholog function: Predicted aldo/keto reductase
Synechocystis sp. PCC 6803	slr1503	-1	3.8	TATGACAATTAGCACC
Cyanothece sp. ATCC 51142	cce_2512	-72	4.1	TGTGAGTTTTGTCACG
Cyanothece sp. PCC 8801	PCC8801_0019	-35	4.6	TGTGAGCTAAATCACT
Trichodesmium erythraeum IMS101	Tery_2155	-99	3.9	CATGGTTTTAATCATA

Position: 5 Score: 4.1 Sequence: AATGTTTAAAGTCACC Locus tag: cce_2911
	cce_2911	5	4.1	AATGTTTAAAGTCACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcC
Ortholog function: Phycobilisome linker polypeptide, allophycocyanin-associated
Cyanothece sp. ATCC 51142	cce_2911	5	4.1	AATGTTTAAAGTCACC
Cyanothece sp. PCC 8801	PCC8801_2788	5	3.9	GATGTTTAAAGTCACC
Microcystis aeruginosa NIES-843	MAE_10240	5	4.1	GATGTTCAAAATCACC
Trichodesmium erythraeum IMS101	Tery_3647	5	4.2	AATGTTTAAGATCACA
Synechococcus sp. JA-3-3Ab	CYA_2225	5	3.7	CATGTTTAAGATCACG
Synechococcus sp. WH 8102	SYNW0483	5	3.9	GTTGTTCAAAGTCACC
Thermosynechococcus elongatus BP-1	null	-233	3.6	CATGAAAGAAGTCACC

Position: -137 Score: 3.8 Sequence: TTTGACTTAAATAACC Locus tag: cce_3288
	cce_3288	-137	3.8	TTTGACTTAAATAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0687
Ortholog function: Conserved hypothetical protein
Synechocystis sp. PCC 6803	slr0013	-56	4.1	TTTGATCAAAGTCCTA
Cyanothece sp. ATCC 51142	cce_3288	-137	3.8	TTTGACTTAAATAACC
Cyanothece sp. PCC 8801	PCC8801_0091	-153	3.8	TTTGATCTCGATCATT
Prochlorococcus marinus str. MIT 9313	PMT0719	17	3.7	TTTGAAACAATTCACC

Position: -48 Score: 4.4 Sequence: TCTGACTGAAATCACA Locus tag: cce_3647
	cce_3647	-48	4.4	TCTGACTGAAATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1600
Ortholog function: Conserved hypothetical protein
Cyanothece sp. ATCC 51142	cce_3647	-48	4.4	TCTGACTGAAATCACA

Position: -215 Score: 4 Sequence: TGTTAACTAGATCACA Locus tag: cce_3687
	cce_3687	-215	4	TGTTAACTAGATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rlpA
Ortholog function: Predicted lipoprotein A
Cyanothece sp. ATCC 51142	cce_3687	-215	4	TGTTAACTAGATCACA
Cyanothece sp. PCC 8801	PCC8801_1079	-239	3.8	GGTGAAATTAGGCAAA
Cyanothece sp. PCC 7425	Cyan7425_3340	-328	4.2	CGTGATTCGGATCACA
Thermosynechococcus elongatus BP-1	tlr0333	-317	4.8	GGTGATCTGAGTCACA

Position: -265 Score: 4.5 Sequence: TGTGATTATTATCAAA Position: -104 Score: 4.4 Sequence: TGTGATTATTATCAAC Locus tag: cce_4329
	cce_4329	-265	4.5	TGTGATTATTATCAAA
		-104	4.4	TGTGATTATTATCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppa
Ortholog function: inorganic pyrophosphatase
Cyanothece sp. ATCC 51142	cce_4329	-265	4.5	TGTGATTATTATCAAA
		-104	4.4	TGTGATTATTATCAAC
Cyanothece sp. PCC 8801	PCC8801_2042	-177	4	TGTGATACTCATCATA
Cyanothece sp. PCC 7425	Cyan7425_1645	-273	3.7	ACTGATTAAGGGCACT
Nostoc sp. PCC 7120	all3570	-160	3.7	TGTGATATTTTTCCAC
Trichodesmium erythraeum IMS101	Tery_1519	-237	3.9	AATGATAGAGTTCACG

Position: -83 Score: 5.1 Sequence: TGTGATCTTGATCACA Locus tag: cce_4424
	cce_4424	-83	5.1	TGTGATCTTGATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: murF
Ortholog function: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10)
Synechococcus sp. PCC 7002	SYNPCC7002_A2693	-92	4.1	GGTGACAAATATCACT
Synechocystis sp. PCC 6803	slr1351	-101	5	GGTGATCTAGATCACA
Cyanothece sp. ATCC 51142	cce_4424	-83	5.1	TGTGATCTTGATCACA
Cyanothece sp. PCC 8801	PCC8801_2372	-74	4.8	AGTGATCTGGGTCACA
Synechococcus sp. JA-3-3Ab	CYA_0077	-32	3.8	ATTGACTAGAGTCATG
Thermosynechococcus elongatus BP-1	null	3	4.2	ATTGATCTAAAACAAC

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of Crp regulog to Cyanothece sp. ATCC 51142

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --