Propagation of NtcA regulog to Synechococcus sp. RCC307

Reference regulog properties
Source regulog:	NtcA - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Synechococcus sp. RCC307
Orthologous TF(s)	SynRCC307_2344
Regulated genes	8

Built upon 228 sites [see more]

Predicted regulatory interactions in *Synechococcus sp. RCC307*
	Locus tag	Position	Score	Sequence
Position: -130 Score: 4.8 Sequence: TGTATCAGCTGATACA Locus tag: SynRCC307_1295
	SynRCC307_1295	-130	4.8	TGTATCAGCTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcF
Ortholog function: phycobilisome core component
Cyanothece sp. ATCC 51142	cce_1944	-177	3.8	TGTGATAAGAAATACA
Cyanothece sp. PCC 8801	PCC8801_0807	-251	4	TGTATACCATGATACG
Cyanothece sp. PCC 7425	Cyan7425_1838	-281	4.9	TGTATCATGAGTTACA
Nostoc sp. PCC 7120	all2327	-233	4.8	TGTAGTCTTTGTTACA
Synechococcus elongatus PCC 7942	Synpcc7942_2158	-214	4.8	TGTAACAGCTGATACA

Position: -75 Score: 4.8 Sequence: TGTATCAGCTGATACA Locus tag: SynRCC307_1296
	SynRCC307_1296	-75	4.8	TGTATCAGCTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002	SYNPCC7002_A1630	-125	3.5	TGTgACccAgacTACA
Synechocystis sp. PCC 6803	slr1756	-98	4.3	GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142	cce_4432	-89	4.5	AGTATCCAATTATACA
		-30	4	TGTATATATTGAAACC
Cyanothece sp. PCC 8801	PCC8801_0808	-92	4	CGTATCATGGTATACA
Cyanothece sp. PCC 7425	Cyan7425_1839	-221	4.9	TGTAACTCATGATACA
Microcystis aeruginosa NIES-843	MAE_19270	-92	4.7	TGTATCgaAaaATACA
Nostoc sp. PCC 7120	alr2328	-142	4.8	TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101	Tery_3834	-250	4	CGTAACACCCGATACA
Synechococcus elongatus PCC 7942	Synpcc7942_2156	-194	4.8	TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313	PMT0601	-79	4.2	GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_1363	-138	4.3	CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421	gvip146	-116	4	CGTATCTCAGACTACA

Position: -243 Score: 3.5 Sequence: TGTCTTTCCAATTACA Position: -160 Score: 3.7 Sequence: TGTATCTAGATAAACC Position: -88 Score: 3.7 Sequence: TGTATCAATGCAAACA Locus tag: SynRCC307_2320
	SynRCC307_2320	-243	3.5	TGTCTTTCCAATTACA
		-160	3.7	TGTATCTAGATAAACC
		-88	3.7	TGTATCAATGCAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002	SYNPCC7002_A2208	-52	3.7	GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803	sll0108	-189	4	AGTAGTAAATCATACA
		-18	4.4	TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142	cce_3261	-152	3.5	TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801	PCC8801_1229	-264	5	TGTATTTTTTGATACA
		-229	4.1	AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843	MAE_40010	-213	4.6	TGTATCAACGAATACA
Trichodesmium erythraeum IMS101	Tery_4477	-83	4.9	AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942	Synpcc7942_0442	-151	4.1	TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313	PMT1853	-160	3.8	TGTAACAAAATGAACT
Synechococcus sp. WH 8102	SYNW0253	-100	4.2	TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1	amt1	-190	4.4	TGTATAACGTGATACA

Position: -90 Score: 4.1 Sequence: GGTAGCTGTCATTACA Locus tag: SynRCC307_2454
	SynRCC307_2454	-90	4.1	GGTAGCTGTCATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, substrate-binding protein
Prochlorococcus marinus str. MIT 9313	PMT2229	-146	4	TGTTGCAACAGCTACC
		-95	4.7	TGTATCATTCACTACA
Synechococcus sp. WH 8102	SYNW2442	-118	4	TGTTGCAACAGCTACC

Position: -123 Score: 4 Sequence: CGTAGCAACGGTTACT Locus tag: SynRCC307_2482
	SynRCC307_2482	-123	4	CGTAGCAACGGTTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002	SYNPCC7002_A1827	-111	4	CGTAGTTAACACTACA
Synechocystis sp. PCC 6803	slr0898	-74	4.7	TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142	cce_1223	-76	4.7	TGTTACATTAGCTACA
Cyanothece sp. PCC 8801	PCC8801_2468	-75	4.6	TGTTACAATTAATACA
Cyanothece sp. PCC 7425	Cyan7425_4573	-123	4.5	TGTAACTTAATATACC
Microcystis aeruginosa NIES-843	MAE_18410	-190	4.1	TGTTACAGACAATACA
Trichodesmium erythraeum IMS101	Tery_1068	-276	3.8	TGTATTTTTATATAGT
		-199	4.1	TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942	Synpcc7942_1240	-220	4.9	TGTAGCAATTGCTACT
		-149	4.3	AGTATCAATGATTACT
		-80	4.4	TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab	CYA_0612	-72	3.9	TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421	gvip212	-146	4	TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1	tlr1349	-82	4.6	AGTAGCAAAATTTACA

Position: -143 Score: 4 Sequence: AGTATCAACCGCTACC Locus tag: SynRCC307_2485
	SynRCC307_2485	-143	4	AGTATCAACCGCTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: cynS
Ortholog function: cyanate hydratase
Synechococcus sp. PCC 7002	SYNPCC7002_A0643	-237	4.5	CGTATCTTTAATTACA
Synechococcus sp. PCC 7002	SYNPCC7002_A0863	-221	4.1	TGTAATTGATTTAACA
Synechococcus elongatus PCC 7942	Synpcc7942_2104	-67	4.4	TGTAACGACGGCTACA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NtcA regulog to Synechococcus sp. RCC307

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --