Propagation of NtcA regulog to Synechococcus sp. RCC307
| Source regulog: | NtcA - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Nitrogen assimilation |
| Effector: | 2-oxoglutarate |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Synechococcus sp. RCC307 |
| Orthologous TF(s) | SynRCC307_2344 |
| Regulated genes | 8 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -130
Score: 4.8 Sequence: TGTATCAGCTGATACA
Locus tag: SynRCC307_1295
|
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| SynRCC307_1295 | -130 | 4.8 | TGTATCAGCTGATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: apcF | ||||
| Ortholog function: phycobilisome core component | ||||
| Cyanothece sp. ATCC 51142 | cce_1944 | -177 | 3.8 | TGTGATAAGAAATACA |
| Cyanothece sp. PCC 8801 | PCC8801_0807 | -251 | 4 | TGTATACCATGATACG |
| Cyanothece sp. PCC 7425 | Cyan7425_1838 | -281 | 4.9 | TGTATCATGAGTTACA |
| Nostoc sp. PCC 7120 | all2327 | -233 | 4.8 | TGTAGTCTTTGTTACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2158 | -214 | 4.8 | TGTAACAGCTGATACA |
|
Position: -75
Score: 4.8 Sequence: TGTATCAGCTGATACA
Locus tag: SynRCC307_1296
|
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| SynRCC307_1296 | -75 | 4.8 | TGTATCAGCTGATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: glutamine synthetase, type I | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1630 | -125 | 3.5 | TGTgACccAgacTACA |
| Synechocystis sp. PCC 6803 | slr1756 | -98 | 4.3 | GGTAGCGAAAAATACA |
| Cyanothece sp. ATCC 51142 | cce_4432 | -89 | 4.5 | AGTATCCAATTATACA |
| -30 | 4 | TGTATATATTGAAACC | ||
| Cyanothece sp. PCC 8801 | PCC8801_0808 | -92 | 4 | CGTATCATGGTATACA |
| Cyanothece sp. PCC 7425 | Cyan7425_1839 | -221 | 4.9 | TGTAACTCATGATACA |
| Microcystis aeruginosa NIES-843 | MAE_19270 | -92 | 4.7 | TGTATCgaAaaATACA |
| Nostoc sp. PCC 7120 | alr2328 | -142 | 4.8 | TGTAACAAAGACTACA |
| Trichodesmium erythraeum IMS101 | Tery_3834 | -250 | 4 | CGTAACACCCGATACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2156 | -194 | 4.8 | TGTATCAgcTGTTACA |
| Prochlorococcus marinus str. MIT 9313 | PMT0601 | -79 | 4.2 | GGTACCTGTTGCTACA |
| Synechococcus sp. JA-3-3Ab | CYA_1363 | -138 | 4.3 | CGTATCAGAAACTACA |
| Gloeobacter violaceus PCC 7421 | gvip146 | -116 | 4 | CGTATCTCAGACTACA |
|
Position: -243
Score: 3.5 Sequence: TGTCTTTCCAATTACA
Position: -160
Score: 3.7 Sequence: TGTATCTAGATAAACC
Position: -88
Score: 3.7 Sequence: TGTATCAATGCAAACA
Locus tag: SynRCC307_2320
|
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| SynRCC307_2320 | -243 | 3.5 | TGTCTTTCCAATTACA | |
| -160 | 3.7 | TGTATCTAGATAAACC | ||
| -88 | 3.7 | TGTATCAATGCAAACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amt1 | ||||
| Ortholog function: ammonium transporter | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2208 | -52 | 3.7 | GGTTACTTCTGCTACC |
| Synechocystis sp. PCC 6803 | sll0108 | -189 | 4 | AGTAGTAAATCATACA |
| -18 | 4.4 | TGTAGATTAAAGTACA | ||
| Cyanothece sp. ATCC 51142 | cce_3261 | -152 | 3.5 | TGTtAaggtTGTaACA |
| Cyanothece sp. PCC 8801 | PCC8801_1229 | -264 | 5 | TGTATTTTTTGATACA |
| -229 | 4.1 | AGTAATAAAAAAAACA | ||
| Microcystis aeruginosa NIES-843 | MAE_40010 | -213 | 4.6 | TGTATCAACGAATACA |
| Trichodesmium erythraeum IMS101 | Tery_4477 | -83 | 4.9 | AGTAGCATTTGATACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_0442 | -151 | 4.1 | TGTTACATCGATTACA |
| Prochlorococcus marinus str. MIT 9313 | PMT1853 | -160 | 3.8 | TGTAACAAAATGAACT |
| Synechococcus sp. WH 8102 | SYNW0253 | -100 | 4.2 | TGTATCAATTAACACA |
| Thermosynechococcus elongatus BP-1 | amt1 | -190 | 4.4 | TGTATAACGTGATACA |
|
Position: -90
Score: 4.1 Sequence: GGTAGCTGTCATTACA
Locus tag: SynRCC307_2454
|
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| SynRCC307_2454 | -90 | 4.1 | GGTAGCTGTCATTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: urtA | ||||
| Ortholog function: Urea ABC transporter, substrate-binding protein | ||||
| Prochlorococcus marinus str. MIT 9313 | PMT2229 | -146 | 4 | TGTTGCAACAGCTACC |
| -95 | 4.7 | TGTATCATTCACTACA | ||
| Synechococcus sp. WH 8102 | SYNW2442 | -118 | 4 | TGTTGCAACAGCTACC |
|
Position: -123
Score: 4 Sequence: CGTAGCAACGGTTACT
Locus tag: SynRCC307_2482
|
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| SynRCC307_2482 | -123 | 4 | CGTAGCAACGGTTACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirA | ||||
| Ortholog function: Nitrite reductase, ferredoxin dependent | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1827 | -111 | 4 | CGTAGTTAACACTACA |
| Synechocystis sp. PCC 6803 | slr0898 | -74 | 4.7 | TGTAATTTACGTTACA |
| Cyanothece sp. ATCC 51142 | cce_1223 | -76 | 4.7 | TGTTACATTAGCTACA |
| Cyanothece sp. PCC 8801 | PCC8801_2468 | -75 | 4.6 | TGTTACAATTAATACA |
| Cyanothece sp. PCC 7425 | Cyan7425_4573 | -123 | 4.5 | TGTAACTTAATATACC |
| Microcystis aeruginosa NIES-843 | MAE_18410 | -190 | 4.1 | TGTTACAGACAATACA |
| Trichodesmium erythraeum IMS101 | Tery_1068 | -276 | 3.8 | TGTATTTTTATATAGT |
| -199 | 4.1 | TGTTATATAAGCTACG | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_1240 | -220 | 4.9 | TGTAGCAATTGCTACT |
| -149 | 4.3 | AGTATCAATGATTACT | ||
| -80 | 4.4 | TGTAGTTTCTGTTACC | ||
| Synechococcus sp. JA-3-3Ab | CYA_0612 | -72 | 3.9 | TGTAACTGCCAATACC |
| Gloeobacter violaceus PCC 7421 | gvip212 | -146 | 4 | TGTATCTGGGGTTACG |
| Thermosynechococcus elongatus BP-1 | tlr1349 | -82 | 4.6 | AGTAGCAAAATTTACA |
|
Position: -143
Score: 4 Sequence: AGTATCAACCGCTACC
Locus tag: SynRCC307_2485
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| SynRCC307_2485 | -143 | 4 | AGTATCAACCGCTACC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cynS | ||||
| Ortholog function: cyanate hydratase | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0643 | -237 | 4.5 | CGTATCTTTAATTACA |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0863 | -221 | 4.1 | TGTAATTGATTTAACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2104 | -67 | 4.4 | TGTAACGACGGCTACA |