Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtcA regulog to Synechococcus elongatus PCC 7942

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus elongatus PCC 7942
Orthologous TF(s) Synpcc7942_0127
Regulated genes 16
Built upon 228 sites [see more]
Predicted regulatory interactions in Synechococcus elongatus PCC 7942
Locus tag Position Score Sequence
Position: -157
Score: 4.7
Sequence: AGTAGCAGTTGCTACA
Locus tag: Synpcc7942_0127
Synpcc7942_0127 -157 4.7 AGTAGCAGTTGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcA
Ortholog function: Global nitrogen transcription regulator, Crp family
Synechococcus sp. PCC 7002 SYNPCC7002_A1675 -177 3.9 TGAAGCAAAAAGTACA
Cyanothece sp. PCC 7425 Cyan7425_0755 -173 4.8 TGTATCCGATGATACA
Nostoc sp. PCC 7120 alr4392 -151 3.7 GGTATCATTATGAACA
-111 3.7 AGTATAGGAAAGTACA
Synechococcus elongatus PCC 7942 Synpcc7942_0127 -157 4.7 AGTAGCAGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1799 -181 4.7 TGTAGCTCCTGCTACA
Gloeobacter violaceus PCC 7421 gvip454 -77 3.9 AGTAGTCCCTAATACA
Position: -103
Score: 4.8
Sequence: TGTAGCAGTAACTACA
Locus tag: Synpcc7942_0321
Synpcc7942_0321 -103 4.8 TGTAGCAGTAACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnB
Ortholog function: nitrogen regulatory protein P-II
Synechocystis sp. PCC 6803 ssl0707 -184 3.7 GGTACTGATTTTTACA
Nostoc sp. PCC 7120 all2319 -214 3.8 AGTTACACAGACTACA
Synechococcus elongatus PCC 7942 Synpcc7942_0321 -103 4.8 TGTAGCAGTAACTACA
Synechococcus sp. JA-3-3Ab CYA_1508 -74 4.5 TGTATCCGTTTTTACA
Thermosynechococcus elongatus BP-1 tll0591 -80 5.1 TGTAGCTATTGCTACA
Position: -151
Score: 4.1
Sequence: TGTTACATCGATTACA
Locus tag: Synpcc7942_0442
Synpcc7942_0442 -151 4.1 TGTTACATCGATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002 SYNPCC7002_A2208 -52 3.7 GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803 sll0108 -189 4 AGTAGTAAATCATACA
-18 4.4 TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142 cce_3261 -152 3.5 TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801 PCC8801_1229 -264 5 TGTATTTTTTGATACA
-229 4.1 AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843 MAE_40010 -213 4.6 TGTATCAACGAATACA
Trichodesmium erythraeum IMS101 Tery_4477 -83 4.9 AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_0442 -151 4.1 TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313 PMT1853 -160 3.8 TGTAACAAAATGAACT
Synechococcus sp. WH 8102 SYNW0253 -100 4.2 TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1 amt1 -190 4.4 TGTATAACGTGATACA
Position: -220
Score: 4.9
Sequence: TGTAGCAATTGCTACT
Position: -149
Score: 4.3
Sequence: AGTATCAATGATTACT
Position: -80
Score: 4.4
Sequence: TGTAGTTTCTGTTACC
Locus tag: Synpcc7942_1240
Synpcc7942_1240 -220 4.9 TGTAGCAATTGCTACT
-149 4.3 AGTATCAATGATTACT
-80 4.4 TGTAGTTTCTGTTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002 SYNPCC7002_A1827 -111 4 CGTAGTTAACACTACA
Synechocystis sp. PCC 6803 slr0898 -74 4.7 TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142 cce_1223 -76 4.7 TGTTACATTAGCTACA
Cyanothece sp. PCC 8801 PCC8801_2468 -75 4.6 TGTTACAATTAATACA
Cyanothece sp. PCC 7425 Cyan7425_4573 -123 4.5 TGTAACTTAATATACC
Microcystis aeruginosa NIES-843 MAE_18410 -190 4.1 TGTTACAGACAATACA
Trichodesmium erythraeum IMS101 Tery_1068 -276 3.8 TGTATTTTTATATAGT
-199 4.1 TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942 Synpcc7942_1240 -220 4.9 TGTAGCAATTGCTACT
-149 4.3 AGTATCAATGATTACT
-80 4.4 TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab CYA_0612 -72 3.9 TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421 gvip212 -146 4 TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1 tlr1349 -82 4.6 AGTAGCAAAATTTACA
Position: -82
Score: 4.9
Sequence: AGTAGCAATTGCTACA
Locus tag: Synpcc7942_1241
Synpcc7942_1241 -82 4.9 AGTAGCAATTGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: Nitrite reductase related protein
Synechococcus elongatus PCC 7942 Synpcc7942_1241 -153 4.3 AGTAATCATTGATACT
-82 4.9 AGTAGCAATTGCTACA
Position: -340
Score: 3.6
Sequence: AGTAGACCTAAGTACA
Locus tag: Synpcc7942_1426
Synpcc7942_1426 -340 3.6 AGTAGACCTAAGTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbcL
Ortholog function: RuBisCO large subunit (EC 4.1.1.39)
Synechocystis sp. PCC 6803 slr0009 -228 4.3 TGTAATTTAAAAAACA
Nostoc sp. PCC 7120 alr1524 -32 3.6 AGTAAAAAGAGTGACA
Trichodesmium erythraeum IMS101 Tery_4410 -293 3.4 GATAACTATTACTACG
Position: -27
Score: 4.3
Sequence: TGTATCCGTTGCTACC
Locus tag: Synpcc7942_1845
Synpcc7942_1845 -27 4.3 TGTATCCGTTGCTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: cce_3797
Ortholog function: conserved hypothetical protein
Cyanothece sp. ATCC 51142 cce_3797 -70 4.9 TGTAGCTTAATATACA
Cyanothece sp. ATCC 51142 cce_3797 -70 4.9 TGTAGCTTAATATACA
Cyanothece sp. PCC 8801 PCC8801_3848 -165 5.1 TGTAACTTTAGATACA
Cyanothece sp. PCC 8801 PCC8801_3848 -165 5.1 TGTAACTTTAGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_1845 -27 4.3 TGTATCCGTTGCTACC
Synechococcus elongatus PCC 7942 Synpcc7942_1845 -27 4.3 TGTATCCGTTGCTACC
Position: -67
Score: 4.4
Sequence: TGTAACGACGGCTACA
Locus tag: Synpcc7942_2107
Synpcc7942_2107 -67 4.4 TGTAACGACGGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cynA
Ortholog function: cyanate ABC transporter, substrate binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0860 -221 4.1 TGTAATTGATTTAACA
Synechococcus elongatus PCC 7942 Synpcc7942_2107 -67 4.4 TGTAACGACGGCTACA
Synechococcus sp. WH 8102 SYNW2487 -103 4.1 TGTAGCAAGTGAGACA
-66 4.5 AGTATCACCTGATACA
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