Propagation of NtcB regulog to Synechococcus elongatus PCC 7942

Reference regulog properties
Source regulog:	NtcB - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Nitrite
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Synechococcus elongatus PCC 7942
Orthologous TF(s)	Synpcc7942_1242
Regulated genes	2

Built upon 44 sites [see more]

Predicted regulatory interactions in *Synechococcus elongatus PCC 7942*
	Locus tag	Position	Score	Sequence
Position: -109 Score: 4.3 Sequence: TTGCAGAACATGCAT Position: -100 Score: 4 Sequence: ATGCATGATTTACAA Locus tag: Synpcc7942_1240
	Synpcc7942_1240	-109	4.3	TTGCAGAACATGCAT
		-100	4	ATGCATGATTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: ferredoxin--nitrite reductase
Synechococcus sp. PCC 7002	SYNPCC7002_A1827	-162	4	ATGCGGCGATCGCAT
Synechocystis sp. PCC 6803	slr0898	-103	4.8	ATGCGTAAACTGCAT
Cyanothece sp. ATCC 51142	cce_1223	-127	4.7	ATGCAAAAAATCCAT
		-105	4.1	ATGCAAAAAACGGAT
Cyanothece sp. PCC 8801	PCC8801_2468	-126	3.9	ATGCAAAATAATCAT
Cyanothece sp. PCC 7425	Cyan7425_4573	-174	4.5	ATGCAGGTTTGGCAT
Microcystis aeruginosa NIES-843	MAE_18410	-241	4.6	ATGCACTTACTGCAT
Nostoc sp. PCC 7120	alr0607	-562	4.8	ATGCAGAAAACGCAT
Trichodesmium erythraeum IMS101	Tery_1068	-250	4.7	ATGTAATAAATGCAT
Synechococcus elongatus PCC 7942	Synpcc7942_1240	-109	4.3	TTGCAGAACATGCAT
Synechococcus sp. JA-3-3Ab	CYA_0612	-101	4.4	ATGACAAAACTGCAT
Thermosynechococcus elongatus BP-1	tlr1349	-111	4.4	ATACAAAAACTGTAT

Position: -192 Score: 4.3 Sequence: ATGCATGTTCTGCAA Locus tag: Synpcc7942_1241
	Synpcc7942_1241	-192	4.3	ATGCATGTTCTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Synpcc7942_1241
Ortholog function: nitrite reductase related protein
Synechococcus elongatus PCC 7942	Synpcc7942_1241	-192	4.3	ATGCATGTTCTGCAA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --