Propagation of NtcA regulog to Acaryochloris marina MBIC11017

Reference regulog properties
Source regulog:	NtcA - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Acaryochloris marina MBIC11017
Orthologous TF(s)	AM1_3155
Regulated genes	31

Built upon 228 sites [see more]

Predicted regulatory interactions in *Acaryochloris marina MBIC11017*
	Locus tag	Position	Score	Sequence
Position: -96 Score: 3.7 Sequence: GGTTTTCTTTGTTACT Locus tag: AM1_1154
	AM1_1154	-96	3.7	GGTTTTCTTTGTTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hanA
Ortholog function: DNA binding protein HU
Nostoc sp. PCC 7120	asr3935	-279	3.6	GGTATTTTTTCCTACT

Position: -169 Score: 4.8 Sequence: TGTATTTTCTGATACA Locus tag: AM1_1497
	AM1_1497	-169	4.8	TGTATTTTCTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002	SYNPCC7002_A1630	-125	3.5	TGTgACccAgacTACA
Synechocystis sp. PCC 6803	slr1756	-98	4.3	GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142	cce_4432	-89	4.5	AGTATCCAATTATACA
		-30	4	TGTATATATTGAAACC
Cyanothece sp. PCC 8801	PCC8801_0808	-92	4	CGTATCATGGTATACA
Cyanothece sp. PCC 7425	Cyan7425_1839	-221	4.9	TGTAACTCATGATACA
Microcystis aeruginosa NIES-843	MAE_19270	-92	4.7	TGTATCgaAaaATACA
Nostoc sp. PCC 7120	alr2328	-142	4.8	TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101	Tery_3834	-250	4	CGTAACACCCGATACA
Synechococcus elongatus PCC 7942	Synpcc7942_2156	-194	4.8	TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313	PMT0601	-79	4.2	GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_1363	-138	4.3	CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421	gvip146	-116	4	CGTATCTCAGACTACA

Position: -130 Score: 4.3 Sequence: GGTTACATAAGATACA Locus tag: AM1_1662
	AM1_1662	-130	4.3	GGTTACATAAGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltS
Ortholog function: Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)
Nostoc sp. PCC 7120	alr4344	-265	3.5	TGGAAAAATTAAAACA
Trichodesmium erythraeum IMS101	Tery_0466	-228	4.2	TGTATCCTAGGCAACA

Position: 14 Score: 4.2 Sequence: AGTTGCCAAAGATACA Locus tag: AM1_1784
	AM1_1784	14	4.2	AGTTGCCAAAGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbcX
Ortholog function: Predicted RuBisCo chaperone
Nostoc sp. PCC 7120	alr1525	-32	3.6	AGTAAAAAGAGTGACA

Position: -116 Score: 4.3 Sequence: TGTAACGACTGATACG Locus tag: AM1_2984
	AM1_2984	-116	4.3	TGTAACGACTGATACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002	SYNPCC7002_A1827	-111	4	CGTAGTTAACACTACA
Synechocystis sp. PCC 6803	slr0898	-74	4.7	TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142	cce_1223	-76	4.7	TGTTACATTAGCTACA
Cyanothece sp. PCC 8801	PCC8801_2468	-75	4.6	TGTTACAATTAATACA
Cyanothece sp. PCC 7425	Cyan7425_4573	-123	4.5	TGTAACTTAATATACC
Microcystis aeruginosa NIES-843	MAE_18410	-190	4.1	TGTTACAGACAATACA
Trichodesmium erythraeum IMS101	Tery_1068	-276	3.8	TGTATTTTTATATAGT
		-199	4.1	TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942	Synpcc7942_1240	-220	4.9	TGTAGCAATTGCTACT
		-149	4.3	AGTATCAATGATTACT
		-80	4.4	TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab	CYA_0612	-72	3.9	TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421	gvip212	-146	4	TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1	tlr1349	-82	4.6	AGTAGCAAAATTTACA

Position: -203 Score: 4.9 Sequence: TGTATATTTTGATACA Position: -49 Score: 3.6 Sequence: TGTCTCTTCCTATACA Locus tag: AM1_3155
	AM1_3155	-203	4.9	TGTATATTTTGATACA
		-49	3.6	TGTCTCTTCCTATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcA
Ortholog function: Global nitrogen transcription regulator, Crp family
Synechococcus sp. PCC 7002	SYNPCC7002_A1675	-177	3.9	TGAAGCAAAAAGTACA
Cyanothece sp. PCC 7425	Cyan7425_0755	-173	4.8	TGTATCCGATGATACA
Nostoc sp. PCC 7120	alr4392	-151	3.7	GGTATCATTATGAACA
		-111	3.7	AGTATAGGAAAGTACA
Synechococcus elongatus PCC 7942	Synpcc7942_0127	-157	4.7	AGTAGCAGTTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_1799	-181	4.7	TGTAGCTCCTGCTACA
Gloeobacter violaceus PCC 7421	gvip454	-77	3.9	AGTAGTCCCTAATACA

Position: -213 Score: 5 Sequence: TGTATCTAAAAATACA Locus tag: AM1_3533
	AM1_3533	-213	5	TGTATCTAAAAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Cyanothece sp. PCC 7425	Cyan7425_0782	-228	4.4	TGTATAACGTGATACA

Position: -104 Score: 4.3 Sequence: AGTAACGATATTTACA Locus tag: AM1_4372
	AM1_4372	-104	4.3	AGTAACGATATTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2395
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002	SYNPCC7002_A2395	-200	4.5	TGTTACTTAAATTACA
		-92	4.5	TGTAGTAGACGTTACA
Cyanothece sp. ATCC 51142	cce_2729	-148	4	TGTAACATATGATAAC
		-87	4.6	TGTAATATTGATTACA
Cyanothece sp. PCC 8801	PCC8801_2066	-53	4.8	TGTAATATTAATTACA
Cyanothece sp. PCC 7425	Cyan7425_0833	-38	3.7	AGTAGTTTAATAAACT
Microcystis aeruginosa NIES-843	MAE_38700	-87	4.2	TGTAATCATCTTTACA
Nostoc sp. PCC 7120	alr4308	-64	3.9	GGTAGTCGGAGTTACA
Trichodesmium erythraeum IMS101	Tery_0672	-94	4.3	AGTATTCAAAATTACA
Synechococcus sp. JA-3-3Ab	CYA_0570	-139	3.9	GGTAAGATAAAATACA
		-81	4.2	CGTATCAAAGGCTACT
Thermosynechococcus elongatus BP-1	tlr1468	-85	4.3	TGTAGTTGAGTTTACA

Position: -20 Score: 4.4 Sequence: TGTAATCTAGACTACA Locus tag: AM1_4387
	AM1_4387	-20	4.4	TGTAATCTAGACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: Nitrogen assimilation transcriptional activator, LysR family
Synechococcus sp. PCC 7002	SYNPCC7002_A1632	-87	3.9	TGTAACATccGgaACA
Cyanothece sp. ATCC 51142	cce_0198	-73	4.2	AGTATCAATTTCTACG
Cyanothece sp. PCC 8801	PCC8801_2329	-80	4.7	TGTATCAAATTCTACT
Cyanothece sp. PCC 7425	Cyan7425_1599	-78	4.6	TGTATCACTATCTACA
Microcystis aeruginosa NIES-843	MAE_09380	-80	4.1	gGTAgCAatTtcTACc
Nostoc sp. PCC 7120	all0602	-80	4.5	TGTAACAAAATCTACC
		-21	4.7	TGTAATTAAGGCTACA
Trichodesmium erythraeum IMS101	Tery_4333	-27	4	TGTATAAAATAACACA
Synechococcus elongatus PCC 7942	Synpcc7942_1242	-153	4.3	AGTAATCATTGATACT
		-82	4.9	AGTAGCAATTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_0984	-89	4.2	TGTAACGGTGTTTACA
Gloeobacter violaceus PCC 7421	gvip213	-46	4	CGTAACCCCAGATACA
Thermosynechococcus elongatus BP-1	null	-122	3.9	TGTATCAATCAACACA

Position: -216 Score: 4.6 Sequence: GGTATCAAATACTACA Locus tag: AM1_5168
	AM1_5168	-216	4.6	GGTATCAAATACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cynA
Ortholog function: cyanate ABC transporter, substrate binding protein
Synechococcus sp. PCC 7002	SYNPCC7002_A0860	-221	4.1	TGTAATTGATTTAACA
Synechococcus elongatus PCC 7942	Synpcc7942_2107	-67	4.4	TGTAACGACGGCTACA
Synechococcus sp. WH 8102	SYNW2487	-103	4.1	TGTAGCAAGTGAGACA
		-66	4.5	AGTATCACCTGATACA

Position: -7 Score: 3.9 Sequence: TGTAACTATGAATAAA Locus tag: AM1_6173
	AM1_6173	-7	3.9	TGTAACTATGAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hanA
Ortholog function: DNA binding protein HU
Nostoc sp. PCC 7120	asr3935	-279	3.6	GGTATTTTTTCCTACT

Position: -178 Score: 4 Sequence: TGTATTGTCTTGTACA Locus tag: AM1_A0353
	AM1_A0353	-178	4	TGTATTGTCTTGTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hanA
Ortholog function: DNA binding protein HU
Nostoc sp. PCC 7120	asr3935	-279	3.6	GGTATTTTTTCCTACT

Position: -138 Score: 3.8 Sequence: AGTAATGAATGATATA Locus tag: AM1_B0086
	AM1_B0086	-138	3.8	AGTAATGAATGATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hanA
Ortholog function: DNA binding protein HU
Nostoc sp. PCC 7120	asr3935	-279	3.6	GGTATTTTTTCCTACT

Position: -155 Score: 4.4 Sequence: TGTATTCTCTTCTACA Locus tag: AM1_C0338
	AM1_C0338	-155	4.4	TGTATTCTCTTCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hanA
Ortholog function: DNA binding protein HU
Nostoc sp. PCC 7120	asr3935	-279	3.6	GGTATTTTTTCCTACT

Position: -176 Score: 3.9 Sequence: TGTATAGTCTTGTACA Locus tag: AM1_C0353
	AM1_C0353	-176	3.9	TGTATAGTCTTGTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hanA
Ortholog function: DNA binding protein HU
Nostoc sp. PCC 7120	asr3935	-279	3.6	GGTATTTTTTCCTACT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NtcA regulog to Acaryochloris marina MBIC11017

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --