Propagation of NtcA regulog to Acaryochloris marina MBIC11017
| Source regulog: | NtcA - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Nitrogen assimilation |
| Effector: | 2-oxoglutarate |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Acaryochloris marina MBIC11017 |
| Orthologous TF(s) | AM1_3155 |
| Regulated genes | 31 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -96
Score: 3.7 Sequence: GGTTTTCTTTGTTACT
Locus tag: AM1_1154
|
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| AM1_1154 | -96 | 3.7 | GGTTTTCTTTGTTACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hanA | ||||
| Ortholog function: DNA binding protein HU | ||||
| Nostoc sp. PCC 7120 | asr3935 | -279 | 3.6 | GGTATTTTTTCCTACT |
|
Position: -169
Score: 4.8 Sequence: TGTATTTTCTGATACA
Locus tag: AM1_1497
|
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| AM1_1497 | -169 | 4.8 | TGTATTTTCTGATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: glutamine synthetase, type I | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1630 | -125 | 3.5 | TGTgACccAgacTACA |
| Synechocystis sp. PCC 6803 | slr1756 | -98 | 4.3 | GGTAGCGAAAAATACA |
| Cyanothece sp. ATCC 51142 | cce_4432 | -89 | 4.5 | AGTATCCAATTATACA |
| -30 | 4 | TGTATATATTGAAACC | ||
| Cyanothece sp. PCC 8801 | PCC8801_0808 | -92 | 4 | CGTATCATGGTATACA |
| Cyanothece sp. PCC 7425 | Cyan7425_1839 | -221 | 4.9 | TGTAACTCATGATACA |
| Microcystis aeruginosa NIES-843 | MAE_19270 | -92 | 4.7 | TGTATCgaAaaATACA |
| Nostoc sp. PCC 7120 | alr2328 | -142 | 4.8 | TGTAACAAAGACTACA |
| Trichodesmium erythraeum IMS101 | Tery_3834 | -250 | 4 | CGTAACACCCGATACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2156 | -194 | 4.8 | TGTATCAgcTGTTACA |
| Prochlorococcus marinus str. MIT 9313 | PMT0601 | -79 | 4.2 | GGTACCTGTTGCTACA |
| Synechococcus sp. JA-3-3Ab | CYA_1363 | -138 | 4.3 | CGTATCAGAAACTACA |
| Gloeobacter violaceus PCC 7421 | gvip146 | -116 | 4 | CGTATCTCAGACTACA |
|
Position: -130
Score: 4.3 Sequence: GGTTACATAAGATACA
Locus tag: AM1_1662
|
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| AM1_1662 | -130 | 4.3 | GGTTACATAAGATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltS | ||||
| Ortholog function: Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13) | ||||
| Nostoc sp. PCC 7120 | alr4344 | -265 | 3.5 | TGGAAAAATTAAAACA |
| Trichodesmium erythraeum IMS101 | Tery_0466 | -228 | 4.2 | TGTATCCTAGGCAACA |
|
Position: 14
Score: 4.2 Sequence: AGTTGCCAAAGATACA
Locus tag: AM1_1784
|
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| AM1_1784 | 14 | 4.2 | AGTTGCCAAAGATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rbcX | ||||
| Ortholog function: Predicted RuBisCo chaperone | ||||
| Nostoc sp. PCC 7120 | alr1525 | -32 | 3.6 | AGTAAAAAGAGTGACA |
|
Position: -116
Score: 4.3 Sequence: TGTAACGACTGATACG
Locus tag: AM1_2984
|
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| AM1_2984 | -116 | 4.3 | TGTAACGACTGATACG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirA | ||||
| Ortholog function: Nitrite reductase, ferredoxin dependent | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1827 | -111 | 4 | CGTAGTTAACACTACA |
| Synechocystis sp. PCC 6803 | slr0898 | -74 | 4.7 | TGTAATTTACGTTACA |
| Cyanothece sp. ATCC 51142 | cce_1223 | -76 | 4.7 | TGTTACATTAGCTACA |
| Cyanothece sp. PCC 8801 | PCC8801_2468 | -75 | 4.6 | TGTTACAATTAATACA |
| Cyanothece sp. PCC 7425 | Cyan7425_4573 | -123 | 4.5 | TGTAACTTAATATACC |
| Microcystis aeruginosa NIES-843 | MAE_18410 | -190 | 4.1 | TGTTACAGACAATACA |
| Trichodesmium erythraeum IMS101 | Tery_1068 | -276 | 3.8 | TGTATTTTTATATAGT |
| -199 | 4.1 | TGTTATATAAGCTACG | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_1240 | -220 | 4.9 | TGTAGCAATTGCTACT |
| -149 | 4.3 | AGTATCAATGATTACT | ||
| -80 | 4.4 | TGTAGTTTCTGTTACC | ||
| Synechococcus sp. JA-3-3Ab | CYA_0612 | -72 | 3.9 | TGTAACTGCCAATACC |
| Gloeobacter violaceus PCC 7421 | gvip212 | -146 | 4 | TGTATCTGGGGTTACG |
| Thermosynechococcus elongatus BP-1 | tlr1349 | -82 | 4.6 | AGTAGCAAAATTTACA |
|
Position: -203
Score: 4.9 Sequence: TGTATATTTTGATACA
Position: -49
Score: 3.6 Sequence: TGTCTCTTCCTATACA
Locus tag: AM1_3155
|
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| AM1_3155 | -203 | 4.9 | TGTATATTTTGATACA | |
| -49 | 3.6 | TGTCTCTTCCTATACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ntcA | ||||
| Ortholog function: Global nitrogen transcription regulator, Crp family | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1675 | -177 | 3.9 | TGAAGCAAAAAGTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_0755 | -173 | 4.8 | TGTATCCGATGATACA |
| Nostoc sp. PCC 7120 | alr4392 | -151 | 3.7 | GGTATCATTATGAACA |
| -111 | 3.7 | AGTATAGGAAAGTACA | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_0127 | -157 | 4.7 | AGTAGCAGTTGCTACA |
| Synechococcus sp. JA-3-3Ab | CYA_1799 | -181 | 4.7 | TGTAGCTCCTGCTACA |
| Gloeobacter violaceus PCC 7421 | gvip454 | -77 | 3.9 | AGTAGTCCCTAATACA |
|
Position: -213
Score: 5 Sequence: TGTATCTAAAAATACA
Locus tag: AM1_3533
|
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| AM1_3533 | -213 | 5 | TGTATCTAAAAATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amt1 | ||||
| Ortholog function: ammonium transporter | ||||
| Cyanothece sp. PCC 7425 | Cyan7425_0782 | -228 | 4.4 | TGTATAACGTGATACA |
|
Position: -104
Score: 4.3 Sequence: AGTAACGATATTTACA
Locus tag: AM1_4372
|
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| AM1_4372 | -104 | 4.3 | AGTAACGATATTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SYNPCC7002_A2395 | ||||
| Ortholog function: hypothetical protein | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2395 | -200 | 4.5 | TGTTACTTAAATTACA |
| -92 | 4.5 | TGTAGTAGACGTTACA | ||
| Cyanothece sp. ATCC 51142 | cce_2729 | -148 | 4 | TGTAACATATGATAAC |
| -87 | 4.6 | TGTAATATTGATTACA | ||
| Cyanothece sp. PCC 8801 | PCC8801_2066 | -53 | 4.8 | TGTAATATTAATTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_0833 | -38 | 3.7 | AGTAGTTTAATAAACT |
| Microcystis aeruginosa NIES-843 | MAE_38700 | -87 | 4.2 | TGTAATCATCTTTACA |
| Nostoc sp. PCC 7120 | alr4308 | -64 | 3.9 | GGTAGTCGGAGTTACA |
| Trichodesmium erythraeum IMS101 | Tery_0672 | -94 | 4.3 | AGTATTCAAAATTACA |
| Synechococcus sp. JA-3-3Ab | CYA_0570 | -139 | 3.9 | GGTAAGATAAAATACA |
| -81 | 4.2 | CGTATCAAAGGCTACT | ||
| Thermosynechococcus elongatus BP-1 | tlr1468 | -85 | 4.3 | TGTAGTTGAGTTTACA |
|
Position: -20
Score: 4.4 Sequence: TGTAATCTAGACTACA
Locus tag: AM1_4387
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| AM1_4387 | -20 | 4.4 | TGTAATCTAGACTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ntcB | ||||
| Ortholog function: Nitrogen assimilation transcriptional activator, LysR family | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1632 | -87 | 3.9 | TGTAACATccGgaACA |
| Cyanothece sp. ATCC 51142 | cce_0198 | -73 | 4.2 | AGTATCAATTTCTACG |
| Cyanothece sp. PCC 8801 | PCC8801_2329 | -80 | 4.7 | TGTATCAAATTCTACT |
| Cyanothece sp. PCC 7425 | Cyan7425_1599 | -78 | 4.6 | TGTATCACTATCTACA |
| Microcystis aeruginosa NIES-843 | MAE_09380 | -80 | 4.1 | gGTAgCAatTtcTACc |
| Nostoc sp. PCC 7120 | all0602 | -80 | 4.5 | TGTAACAAAATCTACC |
| -21 | 4.7 | TGTAATTAAGGCTACA | ||
| Trichodesmium erythraeum IMS101 | Tery_4333 | -27 | 4 | TGTATAAAATAACACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1242 | -153 | 4.3 | AGTAATCATTGATACT |
| -82 | 4.9 | AGTAGCAATTGCTACA | ||
| Synechococcus sp. JA-3-3Ab | CYA_0984 | -89 | 4.2 | TGTAACGGTGTTTACA |
| Gloeobacter violaceus PCC 7421 | gvip213 | -46 | 4 | CGTAACCCCAGATACA |
| Thermosynechococcus elongatus BP-1 | null | -122 | 3.9 | TGTATCAATCAACACA |
|
Position: -216
Score: 4.6 Sequence: GGTATCAAATACTACA
Locus tag: AM1_5168
|
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| AM1_5168 | -216 | 4.6 | GGTATCAAATACTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cynA | ||||
| Ortholog function: cyanate ABC transporter, substrate binding protein | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0860 | -221 | 4.1 | TGTAATTGATTTAACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2107 | -67 | 4.4 | TGTAACGACGGCTACA |
| Synechococcus sp. WH 8102 | SYNW2487 | -103 | 4.1 | TGTAGCAAGTGAGACA |
| -66 | 4.5 | AGTATCACCTGATACA | ||
|
Position: -7
Score: 3.9 Sequence: TGTAACTATGAATAAA
Locus tag: AM1_6173
|
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| AM1_6173 | -7 | 3.9 | TGTAACTATGAATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hanA | ||||
| Ortholog function: DNA binding protein HU | ||||
| Nostoc sp. PCC 7120 | asr3935 | -279 | 3.6 | GGTATTTTTTCCTACT |
|
Position: -178
Score: 4 Sequence: TGTATTGTCTTGTACA
Locus tag: AM1_A0353
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| AM1_A0353 | -178 | 4 | TGTATTGTCTTGTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hanA | ||||
| Ortholog function: DNA binding protein HU | ||||
| Nostoc sp. PCC 7120 | asr3935 | -279 | 3.6 | GGTATTTTTTCCTACT |
|
Position: -138
Score: 3.8 Sequence: AGTAATGAATGATATA
Locus tag: AM1_B0086
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| AM1_B0086 | -138 | 3.8 | AGTAATGAATGATATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hanA | ||||
| Ortholog function: DNA binding protein HU | ||||
| Nostoc sp. PCC 7120 | asr3935 | -279 | 3.6 | GGTATTTTTTCCTACT |
|
Position: -155
Score: 4.4 Sequence: TGTATTCTCTTCTACA
Locus tag: AM1_C0338
|
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| AM1_C0338 | -155 | 4.4 | TGTATTCTCTTCTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hanA | ||||
| Ortholog function: DNA binding protein HU | ||||
| Nostoc sp. PCC 7120 | asr3935 | -279 | 3.6 | GGTATTTTTTCCTACT |
|
Position: -176
Score: 3.9 Sequence: TGTATAGTCTTGTACA
Locus tag: AM1_C0353
|
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| AM1_C0353 | -176 | 3.9 | TGTATAGTCTTGTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hanA | ||||
| Ortholog function: DNA binding protein HU | ||||
| Nostoc sp. PCC 7120 | asr3935 | -279 | 3.6 | GGTATTTTTTCCTACT |