Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcA regulog to Acaryochloris marina MBIC11017

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Acaryochloris marina MBIC11017
Orthologous TF(s) AM1_3155
Regulated genes 31
Built upon 228 sites [see more]
Predicted regulatory interactions in Acaryochloris marina MBIC11017
Locus tag Position Score Sequence
Position: -96
Score: 3.7
Sequence: GGTTTTCTTTGTTACT
Locus tag: AM1_1154
AM1_1154 -96 3.7 GGTTTTCTTTGTTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hanA
Ortholog function: DNA binding protein HU
Nostoc sp. PCC 7120 asr3935 -279 3.6 GGTATTTTTTCCTACT
Position: -169
Score: 4.8
Sequence: TGTATTTTCTGATACA
Locus tag: AM1_1497
AM1_1497 -169 4.8 TGTATTTTCTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002 SYNPCC7002_A1630 -125 3.5 TGTgACccAgacTACA
Synechocystis sp. PCC 6803 slr1756 -98 4.3 GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142 cce_4432 -89 4.5 AGTATCCAATTATACA
-30 4 TGTATATATTGAAACC
Cyanothece sp. PCC 8801 PCC8801_0808 -92 4 CGTATCATGGTATACA
Cyanothece sp. PCC 7425 Cyan7425_1839 -221 4.9 TGTAACTCATGATACA
Microcystis aeruginosa NIES-843 MAE_19270 -92 4.7 TGTATCgaAaaATACA
Nostoc sp. PCC 7120 alr2328 -142 4.8 TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_3834 -250 4 CGTAACACCCGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_2156 -194 4.8 TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313 PMT0601 -79 4.2 GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1363 -138 4.3 CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421 gvip146 -116 4 CGTATCTCAGACTACA
Position: -130
Score: 4.3
Sequence: GGTTACATAAGATACA
Locus tag: AM1_1662
AM1_1662 -130 4.3 GGTTACATAAGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltS
Ortholog function: Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)
Nostoc sp. PCC 7120 alr4344 -265 3.5 TGGAAAAATTAAAACA
Trichodesmium erythraeum IMS101 Tery_0466 -228 4.2 TGTATCCTAGGCAACA
Position: 14
Score: 4.2
Sequence: AGTTGCCAAAGATACA
Locus tag: AM1_1784
AM1_1784 14 4.2 AGTTGCCAAAGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbcX
Ortholog function: Predicted RuBisCo chaperone
Nostoc sp. PCC 7120 alr1525 -32 3.6 AGTAAAAAGAGTGACA
Position: -116
Score: 4.3
Sequence: TGTAACGACTGATACG
Locus tag: AM1_2984
AM1_2984 -116 4.3 TGTAACGACTGATACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002 SYNPCC7002_A1827 -111 4 CGTAGTTAACACTACA
Synechocystis sp. PCC 6803 slr0898 -74 4.7 TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142 cce_1223 -76 4.7 TGTTACATTAGCTACA
Cyanothece sp. PCC 8801 PCC8801_2468 -75 4.6 TGTTACAATTAATACA
Cyanothece sp. PCC 7425 Cyan7425_4573 -123 4.5 TGTAACTTAATATACC
Microcystis aeruginosa NIES-843 MAE_18410 -190 4.1 TGTTACAGACAATACA
Trichodesmium erythraeum IMS101 Tery_1068 -276 3.8 TGTATTTTTATATAGT
-199 4.1 TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942 Synpcc7942_1240 -220 4.9 TGTAGCAATTGCTACT
-149 4.3 AGTATCAATGATTACT
-80 4.4 TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab CYA_0612 -72 3.9 TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421 gvip212 -146 4 TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1 tlr1349 -82 4.6 AGTAGCAAAATTTACA
Position: -203
Score: 4.9
Sequence: TGTATATTTTGATACA
Position: -49
Score: 3.6
Sequence: TGTCTCTTCCTATACA
Locus tag: AM1_3155
AM1_3155 -203 4.9 TGTATATTTTGATACA
-49 3.6 TGTCTCTTCCTATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcA
Ortholog function: Global nitrogen transcription regulator, Crp family
Synechococcus sp. PCC 7002 SYNPCC7002_A1675 -177 3.9 TGAAGCAAAAAGTACA
Cyanothece sp. PCC 7425 Cyan7425_0755 -173 4.8 TGTATCCGATGATACA
Nostoc sp. PCC 7120 alr4392 -151 3.7 GGTATCATTATGAACA
-111 3.7 AGTATAGGAAAGTACA
Synechococcus elongatus PCC 7942 Synpcc7942_0127 -157 4.7 AGTAGCAGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1799 -181 4.7 TGTAGCTCCTGCTACA
Gloeobacter violaceus PCC 7421 gvip454 -77 3.9 AGTAGTCCCTAATACA
Position: -213
Score: 5
Sequence: TGTATCTAAAAATACA
Locus tag: AM1_3533
AM1_3533 -213 5 TGTATCTAAAAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Cyanothece sp. PCC 7425 Cyan7425_0782 -228 4.4 TGTATAACGTGATACA
Position: -104
Score: 4.3
Sequence: AGTAACGATATTTACA
Locus tag: AM1_4372
AM1_4372 -104 4.3 AGTAACGATATTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2395
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A2395 -200 4.5 TGTTACTTAAATTACA
-92 4.5 TGTAGTAGACGTTACA
Cyanothece sp. ATCC 51142 cce_2729 -148 4 TGTAACATATGATAAC
-87 4.6 TGTAATATTGATTACA
Cyanothece sp. PCC 8801 PCC8801_2066 -53 4.8 TGTAATATTAATTACA
Cyanothece sp. PCC 7425 Cyan7425_0833 -38 3.7 AGTAGTTTAATAAACT
Microcystis aeruginosa NIES-843 MAE_38700 -87 4.2 TGTAATCATCTTTACA
Nostoc sp. PCC 7120 alr4308 -64 3.9 GGTAGTCGGAGTTACA
Trichodesmium erythraeum IMS101 Tery_0672 -94 4.3 AGTATTCAAAATTACA
Synechococcus sp. JA-3-3Ab CYA_0570 -139 3.9 GGTAAGATAAAATACA
-81 4.2 CGTATCAAAGGCTACT
Thermosynechococcus elongatus BP-1 tlr1468 -85 4.3 TGTAGTTGAGTTTACA
Position: -20
Score: 4.4
Sequence: TGTAATCTAGACTACA
Locus tag: AM1_4387
AM1_4387 -20 4.4 TGTAATCTAGACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: Nitrogen assimilation transcriptional activator, LysR family
Synechococcus sp. PCC 7002 SYNPCC7002_A1632 -87 3.9 TGTAACATccGgaACA
Cyanothece sp. ATCC 51142 cce_0198 -73 4.2 AGTATCAATTTCTACG
Cyanothece sp. PCC 8801 PCC8801_2329 -80 4.7 TGTATCAAATTCTACT
Cyanothece sp. PCC 7425 Cyan7425_1599 -78 4.6 TGTATCACTATCTACA
Microcystis aeruginosa NIES-843 MAE_09380 -80 4.1 gGTAgCAatTtcTACc
Nostoc sp. PCC 7120 all0602 -80 4.5 TGTAACAAAATCTACC
-21 4.7 TGTAATTAAGGCTACA
Trichodesmium erythraeum IMS101 Tery_4333 -27 4 TGTATAAAATAACACA
Synechococcus elongatus PCC 7942 Synpcc7942_1242 -153 4.3 AGTAATCATTGATACT
-82 4.9 AGTAGCAATTGCTACA
Synechococcus sp. JA-3-3Ab CYA_0984 -89 4.2 TGTAACGGTGTTTACA
Gloeobacter violaceus PCC 7421 gvip213 -46 4 CGTAACCCCAGATACA
Thermosynechococcus elongatus BP-1 null -122 3.9 TGTATCAATCAACACA
Position: -216
Score: 4.6
Sequence: GGTATCAAATACTACA
Locus tag: AM1_5168
AM1_5168 -216 4.6 GGTATCAAATACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cynA
Ortholog function: cyanate ABC transporter, substrate binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0860 -221 4.1 TGTAATTGATTTAACA
Synechococcus elongatus PCC 7942 Synpcc7942_2107 -67 4.4 TGTAACGACGGCTACA
Synechococcus sp. WH 8102 SYNW2487 -103 4.1 TGTAGCAAGTGAGACA
-66 4.5 AGTATCACCTGATACA
Position: -7
Score: 3.9
Sequence: TGTAACTATGAATAAA
Locus tag: AM1_6173
AM1_6173 -7 3.9 TGTAACTATGAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hanA
Ortholog function: DNA binding protein HU
Nostoc sp. PCC 7120 asr3935 -279 3.6 GGTATTTTTTCCTACT
Position: -178
Score: 4
Sequence: TGTATTGTCTTGTACA
Locus tag: AM1_A0353
AM1_A0353 -178 4 TGTATTGTCTTGTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hanA
Ortholog function: DNA binding protein HU
Nostoc sp. PCC 7120 asr3935 -279 3.6 GGTATTTTTTCCTACT
Position: -138
Score: 3.8
Sequence: AGTAATGAATGATATA
Locus tag: AM1_B0086
AM1_B0086 -138 3.8 AGTAATGAATGATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hanA
Ortholog function: DNA binding protein HU
Nostoc sp. PCC 7120 asr3935 -279 3.6 GGTATTTTTTCCTACT
Position: -155
Score: 4.4
Sequence: TGTATTCTCTTCTACA
Locus tag: AM1_C0338
AM1_C0338 -155 4.4 TGTATTCTCTTCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hanA
Ortholog function: DNA binding protein HU
Nostoc sp. PCC 7120 asr3935 -279 3.6 GGTATTTTTTCCTACT
Position: -176
Score: 3.9
Sequence: TGTATAGTCTTGTACA
Locus tag: AM1_C0353
AM1_C0353 -176 3.9 TGTATAGTCTTGTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hanA
Ortholog function: DNA binding protein HU
Nostoc sp. PCC 7120 asr3935 -279 3.6 GGTATTTTTTCCTACT