Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtcB regulog to Acaryochloris marina MBIC11017

Reference regulog properties
Source regulog: NtcB - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Nitrite
Phylum: Cyanobacteria
Propagated regulon:
Target genome Acaryochloris marina MBIC11017
Orthologous TF(s) AM1_4387
Regulated genes 5
Built upon 44 sites [see more]
Predicted regulatory interactions in Acaryochloris marina MBIC11017
Locus tag Position Score Sequence
Position: 7
Score: 4.1
Sequence: ATGGAAAAGTTCCAT
Locus tag: AM1_2629
AM1_2629 7 4.1 ATGGAAAAGTTCCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbJ
Ortholog function: photosystem II protein J
Synechococcus sp. PCC 7002 SYNPCC7002_A0233 -30 4.2 ATGCAGTTTATTCAA
Synechocystis sp. PCC 6803 smr0008 -30 4.3 ATGCAATTTATTCAA
Cyanothece sp. ATCC 51142 cce_1303 -31 4.2 ATGCAGTTTATTCAA
Cyanothece sp. PCC 8801 PCC8801_4144 -30 4.3 ATGCAATTTATTCAA
Cyanothece sp. PCC 7425 Cyan7425_2230 -238 4.6 ATGCAGTTTATTCAT
Microcystis aeruginosa NIES-843 MAE_33000 -193 4.2 ATGCAGTTTATTCAA
Nostoc sp. PCC 7120 asr3848 -41 4.2 ATGCAGTTTATTCAA
Trichodesmium erythraeum IMS101 Tery_3507 -33 4.2 ATGCAGTTTATTCAA
Synechococcus elongatus PCC 7942 Synpcc7942_1174 -33 4 ATGCAATTCATTCAA
Synechococcus sp. JA-3-3Ab CYA_2427 -26 4.2 ATGCAGTTTATTCAA
Gloeobacter violaceus PCC 7421 gvip112 -36 3.9 ATGCAGTTTATCCAG
Thermosynechococcus elongatus BP-1 null -33 4.2 ATGCAGTTTATCCAA
Position: -167
Score: 4.1
Sequence: ATGCAGCTTTAGCAT
Position: -154
Score: 4
Sequence: ATGAATCAATTGCAA
Position: -145
Score: 4.1
Sequence: TTGCAAGAACTACAT
Locus tag: AM1_2984
AM1_2984 -167 4.1 ATGCAGCTTTAGCAT
-154 4 ATGAATCAATTGCAA
-145 4.1 TTGCAAGAACTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: ferredoxin--nitrite reductase
Synechococcus sp. PCC 7002 SYNPCC7002_A1827 -162 4 ATGCGGCGATCGCAT
Synechocystis sp. PCC 6803 slr0898 -103 4.8 ATGCGTAAACTGCAT
Cyanothece sp. ATCC 51142 cce_1223 -127 4.7 ATGCAAAAAATCCAT
-105 4.1 ATGCAAAAAACGGAT
Cyanothece sp. PCC 8801 PCC8801_2468 -126 3.9 ATGCAAAATAATCAT
Cyanothece sp. PCC 7425 Cyan7425_4573 -174 4.5 ATGCAGGTTTGGCAT
Microcystis aeruginosa NIES-843 MAE_18410 -241 4.6 ATGCACTTACTGCAT
Nostoc sp. PCC 7120 alr0607 -562 4.8 ATGCAGAAAACGCAT
Trichodesmium erythraeum IMS101 Tery_1068 -250 4.7 ATGTAATAAATGCAT
Synechococcus elongatus PCC 7942 Synpcc7942_1240 -109 4.3 TTGCAGAACATGCAT
Synechococcus sp. JA-3-3Ab CYA_0612 -101 4.4 ATGACAAAACTGCAT
Thermosynechococcus elongatus BP-1 tlr1349 -111 4.4 ATACAAAAACTGTAT
Position: -153
Score: 4
Sequence: ATGATTAAATTGCAT
Locus tag: AM1_2987
AM1_2987 -153 4 ATGATTAAATTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: narB
Ortholog function: nitrate reductase
Synechocystis sp. PCC 6803 sll1454 -125 4.9 ATGCAGTAATCGCAT
Microcystis aeruginosa NIES-843 MAE_53960 -140 4 ATGCGCGATTTGCAT
Nostoc sp. PCC 7120 alr0612 -562 4.8 ATGCAGAAAACGCAT
Trichodesmium erythraeum IMS101 Tery_1070 -250 4.7 ATGTAATAAATGCAT
Synechococcus elongatus PCC 7942 Synpcc7942_1235 -109 4.3 TTGCAGAACATGCAT
Thermosynechococcus elongatus BP-1 tlr1355 -111 4.4 ATACAAAAACTGTAT
Position: -84
Score: 3.7
Sequence: ATACCGAAGTTGTAT
Locus tag: AM1_4387
AM1_4387 -84 3.7 ATACCGAAGTTGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: nitrogen assimilation transcriptional activator NtcB
Synechococcus sp. PCC 7002 SYNPCC7002_A1632 -56 4.4 ATGCAGTAAACTCAT
Synechocystis sp. PCC 6803 slr0395 -187 4 ATGGATTCTTTTCAT
Cyanothece sp. ATCC 51142 cce_0198 -125 3.6 AGACAAAAACTCCAT
Nostoc sp. PCC 7120 all0602 -31 3.9 ATGCCGTAAATGTAA
Trichodesmium erythraeum IMS101 Tery_4333 -87 4.1 ATGAAATATTTATAT
Synechococcus elongatus PCC 7942 Synpcc7942_1242 -192 4.3 ATGCATGTTCTGCAA
Thermosynechococcus elongatus BP-1 null -99 4.2 ATGGGAAAGTTGCAT
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