Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Nodularia spumigena CCY9414

Reference regulog properties
Source regulog: Crp - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process:
Effector: Cyclic 3',5'-AMP
Phylum: Cyanobacteria
Propagated regulon:
Target genome Nodularia spumigena CCY9414
Orthologous TF(s) N9414_13490
Regulated genes 20
Built upon 106 sites [see more]
Predicted regulatory interactions in Nodularia spumigena CCY9414
Locus tag Position Score Sequence
Position: -39
Score: 3.4
Sequence: ACTGACTGAGGGCAAA
Locus tag: N9414_14760
N9414_14760 -39 3.4 ACTGACTGAGGGCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxA
Ortholog function: Cytochrome c oxidase subunit 1 (EC 1.9.3.1)
Nostoc sp. PCC 7120 alr2515 -222 3.1 TCTGGAATAATTCCCC
Trichodesmium erythraeum IMS101 Tery_1778 -193 4 TGTAACCTAAAACAAA
-93 3.9 TCTGAGAAATATCAAA
Position: 21
Score: 4.5
Sequence: AGTGACCGAATTCACA
Locus tag: N9414_15010
N9414_15010 21 4.5 AGTGACCGAATTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifX
Ortholog function: Nitrogen fixation protein
Cyanothece sp. PCC 8801 PCC8801_1790 21 4.3 AGTGACAATGTTCATA
Nostoc sp. PCC 7120 all1436 21 4.3 AGTGACAGAATTCATA
Trichodesmium erythraeum IMS101 Tery_4140 21 4.3 ACTGATTTTATTCATA
Position: -240
Score: 3.1
Sequence: AGTAAACAAATTGATA
Position: -143
Score: 3.3
Sequence: TGTGGCATTTAGCCCA
Locus tag: N9414_15110
N9414_15110 -240 3.1 AGTAAACAAATTGATA
-143 3.3 TGTGGCATTTAGCCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifB
Ortholog function: FeMo nitrogenase cofactor biosynthesis protein
Cyanothece sp. ATCC 51142 cce_0554 -123 4 GGTGGTATAAATGACA
Cyanothece sp. PCC 7425 Cyan7425_2361 -40 3.9 ACTGTTATAAAGCACC
Nostoc sp. PCC 7120 all1517 -299 3.1 ACTGCTATAAATCTTA
Trichodesmium erythraeum IMS101 Tery_4133 -356 3.7 TATGACTTATAGCATG
Position: 27
Score: 3.6
Sequence: TGTGTACCTAGTCAAA
Locus tag: N9414_05454
N9414_05454 27 3.6 TGTGTACCTAGTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcC
Ortholog function: Phycobilisome linker polypeptide, allophycocyanin-associated
Cyanothece sp. ATCC 51142 cce_2911 5 4.1 AATGTTTAAAGTCACC
Cyanothece sp. PCC 8801 PCC8801_2788 5 3.9 GATGTTTAAAGTCACC
Microcystis aeruginosa NIES-843 MAE_10240 5 4.1 GATGTTCAAAATCACC
Trichodesmium erythraeum IMS101 Tery_3647 5 4.2 AATGTTTAAGATCACA
Synechococcus sp. JA-3-3Ab CYA_2225 5 3.7 CATGTTTAAGATCACG
Synechococcus sp. WH 8102 SYNW0483 5 3.9 GTTGTTCAAAGTCACC
Thermosynechococcus elongatus BP-1 null -233 3.6 CATGAAAGAAGTCACC
Position: -144
Score: 3.8
Sequence: AATGACCAATAACAAA
Locus tag: N9414_16589
N9414_16589 -144 3.8 AATGACCAATAACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0687
Ortholog function: Conserved hypothetical protein
Synechocystis sp. PCC 6803 slr0013 -56 4.1 TTTGATCAAAGTCCTA
Cyanothece sp. ATCC 51142 cce_3288 -137 3.8 TTTGACTTAAATAACC
Cyanothece sp. PCC 8801 PCC8801_0091 -153 3.8 TTTGATCTCGATCATT
Prochlorococcus marinus str. MIT 9313 PMT0719 17 3.7 TTTGAAACAATTCACC
Position: -56
Score: 3.7
Sequence: TATGATTGGGTTCAAA
Position: -1
Score: 4.1
Sequence: TGTGATTAGAGTCGCA
Locus tag: N9414_23143
N9414_23143 -56 3.7 TATGATTGGGTTCAAA
-1 4.1 TGTGATTAGAGTCGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gap2
Ortholog function: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59)
Synechococcus sp. PCC 7002 SYNPCC7002_A0106 -65 3.7 TATGATTGGGGTCATC
Cyanothece sp. PCC 8801 PCC8801_2557 -31 4 ATTGAGCTAAAGCATA
Nostoc sp. PCC 7120 all5062 -56 3.8 TATGATTGGGGTCAAA
-1 4.1 TGTGATTAGAGTCGCA
Trichodesmium erythraeum IMS101 Tery_4030 -410 3.6 TATGATAATTCTCAAG