Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcB regulog to Cyanothece sp. PCC 7822

Reference regulog properties
Source regulog: NtcB - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Nitrite
Phylum: Cyanobacteria
Propagated regulon:
Target genome Cyanothece sp. PCC 7822
Orthologous TF(s) Cyan7822DRAFT_4828
Regulated genes 4
Built upon 44 sites [see more]
Predicted regulatory interactions in Cyanothece sp. PCC 7822
Locus tag Position Score Sequence
Position: -214
Score: 4.2
Sequence: ATGTGATTTTTCCAT
Position: -201
Score: 3.9
Sequence: ATGAAAATTATGCAG
Position: -192
Score: 4.4
Sequence: ATGCAGTTTTTGGAT
Position: -165
Score: 4.8
Sequence: ATGCAAAATACGCAT
Locus tag: Cyan7822DRAFT_1390
Cyan7822DRAFT_1390 -214 4.2 ATGTGATTTTTCCAT
-201 3.9 ATGAAAATTATGCAG
-192 4.4 ATGCAGTTTTTGGAT
-165 4.8 ATGCAAAATACGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: ferredoxin--nitrite reductase
Synechococcus sp. PCC 7002 SYNPCC7002_A1827 -162 4 ATGCGGCGATCGCAT
Synechocystis sp. PCC 6803 slr0898 -103 4.8 ATGCGTAAACTGCAT
Cyanothece sp. ATCC 51142 cce_1223 -127 4.7 ATGCAAAAAATCCAT
-105 4.1 ATGCAAAAAACGGAT
Cyanothece sp. PCC 8801 PCC8801_2468 -126 3.9 ATGCAAAATAATCAT
Cyanothece sp. PCC 7425 Cyan7425_4573 -174 4.5 ATGCAGGTTTGGCAT
Microcystis aeruginosa NIES-843 MAE_18410 -241 4.6 ATGCACTTACTGCAT
Nostoc sp. PCC 7120 alr0607 -562 4.8 ATGCAGAAAACGCAT
Trichodesmium erythraeum IMS101 Tery_1068 -250 4.7 ATGTAATAAATGCAT
Synechococcus elongatus PCC 7942 Synpcc7942_1240 -109 4.3 TTGCAGAACATGCAT
Synechococcus sp. JA-3-3Ab CYA_0612 -101 4.4 ATGACAAAACTGCAT
Thermosynechococcus elongatus BP-1 tlr1349 -111 4.4 ATACAAAAACTGTAT
Position: -141
Score: 3.5
Sequence: TTAGATATATTACAT
Locus tag: Cyan7822DRAFT_4828
Cyan7822DRAFT_4828 -141 3.5 TTAGATATATTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: nitrogen assimilation transcriptional activator NtcB
Synechococcus sp. PCC 7002 SYNPCC7002_A1632 -56 4.4 ATGCAGTAAACTCAT
Synechocystis sp. PCC 6803 slr0395 -187 4 ATGGATTCTTTTCAT
Cyanothece sp. ATCC 51142 cce_0198 -125 3.6 AGACAAAAACTCCAT
Nostoc sp. PCC 7120 all0602 -31 3.9 ATGCCGTAAATGTAA
Trichodesmium erythraeum IMS101 Tery_4333 -87 4.1 ATGAAATATTTATAT
Synechococcus elongatus PCC 7942 Synpcc7942_1242 -192 4.3 ATGCATGTTCTGCAA
Thermosynechococcus elongatus BP-1 null -99 4.2 ATGGGAAAGTTGCAT
Position: -219
Score: 4.5
Sequence: ATGGGTTAATTGCAT
Position: -161
Score: 3.7
Sequence: ATGCAACACATCTAT
Position: -148
Score: 4.4
Sequence: ATGTAAAAAACGCAT
Position: -94
Score: 3.8
Sequence: ATGCAAGAATGTCAA
Locus tag: Cyan7822DRAFT_4837
Cyan7822DRAFT_4837 -219 4.5 ATGGGTTAATTGCAT
-161 3.7 ATGCAACACATCTAT
-148 4.4 ATGTAAAAAACGCAT
-94 3.8 ATGCAAGAATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrtA
Ortholog function: nitrate/nitrite ABC transport system, substrate-binding protein
Synechocystis sp. PCC 6803 sll1450 -125 4.9 ATGCAGTAATCGCAT
Cyanothece sp. PCC 8801 PCC8801_4396 -235 4.5 ATGCAAAAACCACAT
-213 4 ATGCTTTTATTGCAA
Cyanothece sp. PCC 7425 Cyan7425_4572 -174 4.5 ATGCAGGTTTGGCAT
Microcystis aeruginosa NIES-843 MAE_14800 -395 3.7 ATGCTTTTATGACAT
Nostoc sp. PCC 7120 alr0608 -562 4.8 ATGCAGAAAACGCAT
Nostoc sp. PCC 7120 all3333 -135 4.4 ATGCAATTTTTACAA
Synechococcus elongatus PCC 7942 Synpcc7942_1239 -109 4.3 TTGCAGAACATGCAT
Synechococcus sp. JA-3-3Ab CYA_0613 -101 4.4 ATGACAAAACTGCAT
Thermosynechococcus elongatus BP-1 tlr1350 -111 4.4 ATACAAAAACTGTAT
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