Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtcA regulog to Prochlorococcus marinus str. MIT 9211

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Prochlorococcus marinus str. MIT 9211
Orthologous TF(s) null
Regulated genes 7
Built upon 228 sites [see more]
Predicted regulatory interactions in Prochlorococcus marinus str. MIT 9211
Locus tag Position Score Sequence
Position: -64
Score: 3.9
Sequence: AGTCATTATTGCTACA
Locus tag: null
null -64 3.9 AGTCATTATTGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcA
Ortholog function: Global nitrogen transcription regulator, Crp family
Synechococcus sp. PCC 7002 SYNPCC7002_A1675 -177 3.9 TGAAGCAAAAAGTACA
Cyanothece sp. PCC 7425 Cyan7425_0755 -173 4.8 TGTATCCGATGATACA
Nostoc sp. PCC 7120 alr4392 -151 3.7 GGTATCATTATGAACA
-111 3.7 AGTATAGGAAAGTACA
Synechococcus elongatus PCC 7942 Synpcc7942_0127 -157 4.7 AGTAGCAGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1799 -181 4.7 TGTAGCTCCTGCTACA
Gloeobacter violaceus PCC 7421 gvip454 -77 3.9 AGTAGTCCCTAATACA
Position: -100
Score: 3.5
Sequence: CGTATAAACGATTACC
Locus tag: null
null -100 3.5 CGTATAAACGATTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002 SYNPCC7002_A2208 -52 3.7 GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803 sll0108 -189 4 AGTAGTAAATCATACA
-18 4.4 TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142 cce_3261 -152 3.5 TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801 PCC8801_1229 -264 5 TGTATTTTTTGATACA
-229 4.1 AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843 MAE_40010 -213 4.6 TGTATCAACGAATACA
Trichodesmium erythraeum IMS101 Tery_4477 -83 4.9 AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_0442 -151 4.1 TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313 PMT1853 -160 3.8 TGTAACAAAATGAACT
Synechococcus sp. WH 8102 SYNW0253 -100 4.2 TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1 amt1 -190 4.4 TGTATAACGTGATACA
Position: -79
Score: 3.4
Sequence: TGTCTTAAAAAGTACT
Position: -69
Score: 4.2
Sequence: AGTACTTGTTGATACA
Position: -63
Score: 3.6
Sequence: TGTTGATACAAAAACA
Locus tag: null
null -79 3.4 TGTCTTAAAAAGTACT
-69 4.2 AGTACTTGTTGATACA
-63 3.6 TGTTGATACAAAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002 SYNPCC7002_A1630 -125 3.5 TGTgACccAgacTACA
Synechocystis sp. PCC 6803 slr1756 -98 4.3 GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142 cce_4432 -89 4.5 AGTATCCAATTATACA
-30 4 TGTATATATTGAAACC
Cyanothece sp. PCC 8801 PCC8801_0808 -92 4 CGTATCATGGTATACA
Cyanothece sp. PCC 7425 Cyan7425_1839 -221 4.9 TGTAACTCATGATACA
Microcystis aeruginosa NIES-843 MAE_19270 -92 4.7 TGTATCgaAaaATACA
Nostoc sp. PCC 7120 alr2328 -142 4.8 TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_3834 -250 4 CGTAACACCCGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_2156 -194 4.8 TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313 PMT0601 -79 4.2 GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1363 -138 4.3 CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421 gvip146 -116 4 CGTATCTCAGACTACA
Position: -57
Score: 3.7
Sequence: AGGATCATTTGATACG
Locus tag: null
null -57 3.7 AGGATCATTTGATACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltS
Ortholog function: Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)
Nostoc sp. PCC 7120 alr4344 -265 3.5 TGGAAAAATTAAAACA
Trichodesmium erythraeum IMS101 Tery_0466 -228 4.2 TGTATCCTAGGCAACA
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