Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Cyanothece sp. PCC 7424

Reference regulog properties
Source regulog: Crp - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process:
Effector: Cyclic 3',5'-AMP
Phylum: Cyanobacteria
Propagated regulon:
Target genome Cyanothece sp. PCC 7424
Orthologous TF(s) PCC7424_2678
Regulated genes 21
Built upon 106 sites [see more]
Predicted regulatory interactions in Cyanothece sp. PCC 7424
Locus tag Position Score Sequence
Position: -76
Score: 4.8
Sequence: TGTGATCTTGATCACT
Position: 12
Score: 4
Sequence: ATTGACCTAGAGCAAA
Locus tag: PCC7424_2000
PCC7424_2000 -76 4.8 TGTGATCTTGATCACT
12 4 ATTGACCTAGAGCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: murF
Ortholog function: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10)
Synechococcus sp. PCC 7002 SYNPCC7002_A2693 -92 4.1 GGTGACAAATATCACT
Synechocystis sp. PCC 6803 slr1351 -101 5 GGTGATCTAGATCACA
Cyanothece sp. ATCC 51142 cce_4424 -83 5.1 TGTGATCTTGATCACA
Cyanothece sp. PCC 8801 PCC8801_2372 -74 4.8 AGTGATCTGGGTCACA
Synechococcus sp. JA-3-3Ab CYA_0077 -32 3.8 ATTGACTAGAGTCATG
Thermosynechococcus elongatus BP-1 null 3 4.2 ATTGATCTAAAACAAC
Position: 21
Score: 4.3
Sequence: AGTGATAATGTTCATG
Locus tag: PCC7424_2114
PCC7424_2114 21 4.3 AGTGATAATGTTCATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifX
Ortholog function: Nitrogen fixation protein
Cyanothece sp. PCC 8801 PCC8801_1790 21 4.3 AGTGACAATGTTCATA
Nostoc sp. PCC 7120 all1436 21 4.3 AGTGACAGAATTCATA
Trichodesmium erythraeum IMS101 Tery_4140 21 4.3 ACTGATTTTATTCATA
Position: -23
Score: 3.7
Sequence: ACTTATCAGAATCACG
Locus tag: PCC7424_2124
PCC7424_2124 -23 3.7 ACTTATCAGAATCACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifB
Ortholog function: FeMo nitrogenase cofactor biosynthesis protein
Cyanothece sp. ATCC 51142 cce_0554 -123 4 GGTGGTATAAATGACA
Cyanothece sp. PCC 7425 Cyan7425_2361 -40 3.9 ACTGTTATAAAGCACC
Nostoc sp. PCC 7120 all1517 -299 3.1 ACTGCTATAAATCTTA
Trichodesmium erythraeum IMS101 Tery_4133 -356 3.7 TATGACTTATAGCATG
Position: -72
Score: 4.8
Sequence: TGTGATCTAAAACAAA
Locus tag: PCC7424_4073
PCC7424_4073 -72 4.8 TGTGATCTAAAACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxC
Ortholog function: Cytochrome c oxidase subunit 3 (EC 1.9.3.1)
Cyanothece sp. ATCC 51142 cce_1975 -78 3.7 TGTGATAAAAAAGCCA
Nostoc sp. PCC 7120 alr2516 -222 3.1 TCTGGAATAATTCCCC
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