Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Cyanothece sp. PCC 7424

Reference regulog properties
Source regulog: LexA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Cyanobacteria
Propagated regulon:
Target genome Cyanothece sp. PCC 7424
Orthologous TF(s) PCC7424_5333
Regulated genes 4
Built upon 26 sites [see more]
Predicted regulatory interactions in Cyanothece sp. PCC 7424
Locus tag Position Score Sequence
Position: -45
Score: 3.8
Sequence: ACAATAAATGTACT
Position: -37
Score: 4.4
Sequence: TGTACTTATGTACT
Locus tag: PCC7424_3392
PCC7424_3392 -45 3.8 ACAATAAATGTACT
-37 4.4 TGTACTTATGTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ssb
Ortholog function: single-stranded DNA-binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0119 -25 3.9 AGAACAGTTGTATG
Cyanothece sp. PCC 7425 Cyan7425_1469 -18 4.1 AGTACAGGTAAACT
Microcystis aeruginosa NIES-843 MAE_39060 -33 4.3 CATACTATTGTACT
Nostoc sp. PCC 7120 alr0088 -28 5.1 AGTACTTATGTACT
Position: -48
Score: 4
Sequence: ACTACACTTGTAAT
Position: -37
Score: 3.7
Sequence: AATACTGATATTGT
Locus tag: PCC7424_4079
PCC7424_4079 -48 4 ACTACACTTGTAAT
-37 3.7 AATACTGATATTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0856
Ortholog function: Conserved hypothetical protein, no COGs
Cyanothece sp. ATCC 51142 cce_3128 -34 3.8 ACTACACTTATATT
Cyanothece sp. PCC 8801 PCC8801_1259 -47 4.4 ACTACACTTGTATT
Cyanothece sp. PCC 7425 Cyan7425_4886 -52 4.4 ACTACACTTGTATT
Nostoc sp. PCC 7120 all0854 -46 4.4 ACTACACTTGTATT
Synechococcus sp. JA-3-3Ab CYA_0805 -39 3.7 GCTACAGGAGTAGT
Gloeobacter violaceus PCC 7421 gll1134 -45 4.2 ACTACGGCTATACT
Position: -147
Score: 4.5
Sequence: GATACTTTTGTACT
Locus tag: PCC7424_4116
PCC7424_4116 -147 4.5 GATACTTTTGTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombinase A
Synechococcus sp. PCC 7002 SYNPCC7002_A0426 -64 4.3 AGTACGATTGAACT
Cyanothece sp. ATCC 51142 cce_4639 -47 4.8 AATACTTTTGTACT
Cyanothece sp. PCC 7425 Cyan7425_1671 -39 4.5 AGTACGGATATACT
Microcystis aeruginosa NIES-843 MAE_16070 -40 4.6 CATACTGCTGTACT
Nostoc sp. PCC 7120 all3272 -66 4.6 AGTATATCTGTTCT
Prochlorococcus marinus str. MIT 9313 PMT1727 -145 4.9 GGTACGTCTGTACT
Synechococcus sp. WH 8102 SYNW2062 -78 4.7 CGTACGCCTGTACT
Position: -75
Score: 4.8
Sequence: AGTACCTGTGTTCT
Locus tag: PCC7424_5333
PCC7424_5333 -75 4.8 AGTACCTGTGTTCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88)
Cyanothece sp. ATCC 51142 cce_1899 -32 4.7 AGTACCCATGTTCT
Cyanothece sp. PCC 8801 PCC8801_2186 -75 4.3 AGTACTTATGTTCG
Cyanothece sp. PCC 7425 Cyan7425_1233 -131 4.5 GATACAAGTGTTCT
Nostoc sp. PCC 7120 alr4908 -47 4.8 AGTACTAATGTTCT
Prochlorococcus marinus str. MIT 9313 PMT0380 -28 4.6 GGTACACATGTATT
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