Propagation of NtcB regulog to Cyanothece sp. PCC 7424
| Source regulog: | NtcB - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Nitrite |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Cyanothece sp. PCC 7424 |
| Orthologous TF(s) | PCC7424_0664 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -195
Score: 4.1 Sequence: ATGCGGTTTCTGAAT
Position: -167
Score: 5 Sequence: ATGCAATAATCGCAT
Locus tag: PCC7424_1683
|
||||
| PCC7424_1683 | -195 | 4.1 | ATGCGGTTTCTGAAT | |
| -167 | 5 | ATGCAATAATCGCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirA | ||||
| Ortholog function: ferredoxin--nitrite reductase | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1827 | -162 | 4 | ATGCGGCGATCGCAT |
| Synechocystis sp. PCC 6803 | slr0898 | -103 | 4.8 | ATGCGTAAACTGCAT |
| Cyanothece sp. ATCC 51142 | cce_1223 | -127 | 4.7 | ATGCAAAAAATCCAT |
| -105 | 4.1 | ATGCAAAAAACGGAT | ||
| Cyanothece sp. PCC 8801 | PCC8801_2468 | -126 | 3.9 | ATGCAAAATAATCAT |
| Cyanothece sp. PCC 7425 | Cyan7425_4573 | -174 | 4.5 | ATGCAGGTTTGGCAT |
| Microcystis aeruginosa NIES-843 | MAE_18410 | -241 | 4.6 | ATGCACTTACTGCAT |
| Nostoc sp. PCC 7120 | alr0607 | -562 | 4.8 | ATGCAGAAAACGCAT |
| Trichodesmium erythraeum IMS101 | Tery_1068 | -250 | 4.7 | ATGTAATAAATGCAT |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1240 | -109 | 4.3 | TTGCAGAACATGCAT |
| Synechococcus sp. JA-3-3Ab | CYA_0612 | -101 | 4.4 | ATGACAAAACTGCAT |
| Thermosynechococcus elongatus BP-1 | tlr1349 | -111 | 4.4 | ATACAAAAACTGTAT |
|
Position: -153
Score: 4.4 Sequence: ATGCTGAAATTGCAT
Locus tag: PCC7424_3462
|
||||
| PCC7424_3462 | -153 | 4.4 | ATGCTGAAATTGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narB | ||||
| Ortholog function: nitrate reductase | ||||
| Synechocystis sp. PCC 6803 | sll1454 | -125 | 4.9 | ATGCAGTAATCGCAT |
| Microcystis aeruginosa NIES-843 | MAE_53960 | -140 | 4 | ATGCGCGATTTGCAT |
| Nostoc sp. PCC 7120 | alr0612 | -562 | 4.8 | ATGCAGAAAACGCAT |
| Trichodesmium erythraeum IMS101 | Tery_1070 | -250 | 4.7 | ATGTAATAAATGCAT |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1235 | -109 | 4.3 | TTGCAGAACATGCAT |
| Thermosynechococcus elongatus BP-1 | tlr1355 | -111 | 4.4 | ATACAAAAACTGTAT |
|
Position: -263
Score: 3.7 Sequence: ATGCAATATTATTAT
Position: -250
Score: 4.8 Sequence: ATGCAAAAAACGCAT
Locus tag: PCC7424_3527
|
||||
| PCC7424_3527 | -263 | 3.7 | ATGCAATATTATTAT | |
| -250 | 4.8 | ATGCAAAAAACGCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrtA | ||||
| Ortholog function: nitrate/nitrite ABC transport system, substrate-binding protein | ||||
| Synechocystis sp. PCC 6803 | sll1450 | -125 | 4.9 | ATGCAGTAATCGCAT |
| Cyanothece sp. PCC 8801 | PCC8801_4396 | -235 | 4.5 | ATGCAAAAACCACAT |
| -213 | 4 | ATGCTTTTATTGCAA | ||
| Cyanothece sp. PCC 7425 | Cyan7425_4572 | -174 | 4.5 | ATGCAGGTTTGGCAT |
| Microcystis aeruginosa NIES-843 | MAE_14800 | -395 | 3.7 | ATGCTTTTATGACAT |
| Nostoc sp. PCC 7120 | alr0608 | -562 | 4.8 | ATGCAGAAAACGCAT |
| Nostoc sp. PCC 7120 | all3333 | -135 | 4.4 | ATGCAATTTTTACAA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1239 | -109 | 4.3 | TTGCAGAACATGCAT |
| Synechococcus sp. JA-3-3Ab | CYA_0613 | -101 | 4.4 | ATGACAAAACTGCAT |
| Thermosynechococcus elongatus BP-1 | tlr1350 | -111 | 4.4 | ATACAAAAACTGTAT |