Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcB regulog to Cyanothece sp. PCC 7424

Reference regulog properties
Source regulog: NtcB - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Nitrite
Phylum: Cyanobacteria
Propagated regulon:
Target genome Cyanothece sp. PCC 7424
Orthologous TF(s) PCC7424_0664
Regulated genes 4
Built upon 44 sites [see more]
Predicted regulatory interactions in Cyanothece sp. PCC 7424
Locus tag Position Score Sequence
Position: -195
Score: 4.1
Sequence: ATGCGGTTTCTGAAT
Position: -167
Score: 5
Sequence: ATGCAATAATCGCAT
Locus tag: PCC7424_1683
PCC7424_1683 -195 4.1 ATGCGGTTTCTGAAT
-167 5 ATGCAATAATCGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: ferredoxin--nitrite reductase
Synechococcus sp. PCC 7002 SYNPCC7002_A1827 -162 4 ATGCGGCGATCGCAT
Synechocystis sp. PCC 6803 slr0898 -103 4.8 ATGCGTAAACTGCAT
Cyanothece sp. ATCC 51142 cce_1223 -127 4.7 ATGCAAAAAATCCAT
-105 4.1 ATGCAAAAAACGGAT
Cyanothece sp. PCC 8801 PCC8801_2468 -126 3.9 ATGCAAAATAATCAT
Cyanothece sp. PCC 7425 Cyan7425_4573 -174 4.5 ATGCAGGTTTGGCAT
Microcystis aeruginosa NIES-843 MAE_18410 -241 4.6 ATGCACTTACTGCAT
Nostoc sp. PCC 7120 alr0607 -562 4.8 ATGCAGAAAACGCAT
Trichodesmium erythraeum IMS101 Tery_1068 -250 4.7 ATGTAATAAATGCAT
Synechococcus elongatus PCC 7942 Synpcc7942_1240 -109 4.3 TTGCAGAACATGCAT
Synechococcus sp. JA-3-3Ab CYA_0612 -101 4.4 ATGACAAAACTGCAT
Thermosynechococcus elongatus BP-1 tlr1349 -111 4.4 ATACAAAAACTGTAT
Position: -153
Score: 4.4
Sequence: ATGCTGAAATTGCAT
Locus tag: PCC7424_3462
PCC7424_3462 -153 4.4 ATGCTGAAATTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: narB
Ortholog function: nitrate reductase
Synechocystis sp. PCC 6803 sll1454 -125 4.9 ATGCAGTAATCGCAT
Microcystis aeruginosa NIES-843 MAE_53960 -140 4 ATGCGCGATTTGCAT
Nostoc sp. PCC 7120 alr0612 -562 4.8 ATGCAGAAAACGCAT
Trichodesmium erythraeum IMS101 Tery_1070 -250 4.7 ATGTAATAAATGCAT
Synechococcus elongatus PCC 7942 Synpcc7942_1235 -109 4.3 TTGCAGAACATGCAT
Thermosynechococcus elongatus BP-1 tlr1355 -111 4.4 ATACAAAAACTGTAT
Position: -263
Score: 3.7
Sequence: ATGCAATATTATTAT
Position: -250
Score: 4.8
Sequence: ATGCAAAAAACGCAT
Locus tag: PCC7424_3527
PCC7424_3527 -263 3.7 ATGCAATATTATTAT
-250 4.8 ATGCAAAAAACGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrtA
Ortholog function: nitrate/nitrite ABC transport system, substrate-binding protein
Synechocystis sp. PCC 6803 sll1450 -125 4.9 ATGCAGTAATCGCAT
Cyanothece sp. PCC 8801 PCC8801_4396 -235 4.5 ATGCAAAAACCACAT
-213 4 ATGCTTTTATTGCAA
Cyanothece sp. PCC 7425 Cyan7425_4572 -174 4.5 ATGCAGGTTTGGCAT
Microcystis aeruginosa NIES-843 MAE_14800 -395 3.7 ATGCTTTTATGACAT
Nostoc sp. PCC 7120 alr0608 -562 4.8 ATGCAGAAAACGCAT
Nostoc sp. PCC 7120 all3333 -135 4.4 ATGCAATTTTTACAA
Synechococcus elongatus PCC 7942 Synpcc7942_1239 -109 4.3 TTGCAGAACATGCAT
Synechococcus sp. JA-3-3Ab CYA_0613 -101 4.4 ATGACAAAACTGCAT
Thermosynechococcus elongatus BP-1 tlr1350 -111 4.4 ATACAAAAACTGTAT
© 2009-2020 RegPrecise