Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcA regulog to Arthrospira maxima CS-328

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Arthrospira maxima CS-328
Orthologous TF(s) AmaxDRAFT_4666
Regulated genes 29
Built upon 228 sites [see more]
Predicted regulatory interactions in Arthrospira maxima CS-328
Locus tag Position Score Sequence
Position: -35
Score: 3.5
Sequence: AGCAGTTTGTATTACA
Locus tag: AmaxDRAFT_0569
AmaxDRAFT_0569 -35 3.5 AGCAGTTTGTATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxC
Ortholog function: Cytochrome c oxidase subunit 3 (EC 1.9.3.1)
Cyanothece sp. PCC 8801 PCC8801_0569 -148 3.8 TTTATTATTTGTTACC
Microcystis aeruginosa NIES-843 MAE_22950 -141 3.8 AGTTATTTTAAATACT
Nostoc sp. PCC 7120 alr2516 -291 3.5 AGAAGTAGAAGCTACT
Position: -77
Score: 4.3
Sequence: GGTAGCAGGAGTTACA
Locus tag: AmaxDRAFT_0729
AmaxDRAFT_0729 -77 4.3 GGTAGCAGGAGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrrA
Ortholog function: Transcriptional regulator, OmpR family
Synechococcus sp. PCC 7002 SYNPCC7002_A0496 -75 4.1 CGTAACCACGGTTACA
Synechocystis sp. PCC 6803 sll1330 -75 4.6 GGTAACTGTTGTTACA
Cyanothece sp. ATCC 51142 cce_1808 -76 4.3 CGTAGCCGATGTTACA
Cyanothece sp. PCC 8801 PCC8801_3375 -76 4.5 CGTAGCAGATGTTACA
Cyanothece sp. PCC 7425 Cyan7425_0851 -82 4.1 AGTAGCTAGAGTTACG
Nostoc sp. PCC 7120 all4312 -75 4.5 AGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_0675 -89 4.7 AGTAGCTTCTGTTACA
Thermosynechococcus elongatus BP-1 tlr1330 -138 4 AGTATTATTCGTTACG
Position: -250
Score: 4
Sequence: TGTATCACGATTTACC
Locus tag: AmaxDRAFT_1137
AmaxDRAFT_1137 -250 4 TGTATCACGATTTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnB
Ortholog function: nitrogen regulatory protein P-II
Synechocystis sp. PCC 6803 ssl0707 -184 3.7 GGTACTGATTTTTACA
Nostoc sp. PCC 7120 all2319 -214 3.8 AGTTACACAGACTACA
Synechococcus elongatus PCC 7942 Synpcc7942_0321 -103 4.8 TGTAGCAGTAACTACA
Synechococcus sp. JA-3-3Ab CYA_1508 -74 4.5 TGTATCCGTTTTTACA
Thermosynechococcus elongatus BP-1 tll0591 -80 5.1 TGTAGCTATTGCTACA
Position: -111
Score: 4.2
Sequence: TGTAGTCTTTTGTACA
Position: -39
Score: 3.5
Sequence: GGTAGAATGATTTACG
Locus tag: AmaxDRAFT_2046
AmaxDRAFT_2046 -111 4.2 TGTAGTCTTTTGTACA
-39 3.5 GGTAGAATGATTTACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: trxA
Ortholog function: Thioredoxin-1
Nostoc sp. PCC 7120 alr0052 17 3.7 AGTTACAGATTCTACT
Gloeobacter violaceus PCC 7421 gll0880 -379 3.6 TGTATCTAGAACTAGC
Position: -314
Score: 3.8
Sequence: AATAGATTTTAATACA
Locus tag: AmaxDRAFT_2576
AmaxDRAFT_2576 -314 3.8 AATAGATTTTAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1954
Ortholog function: putative two-component sensor histidine kinase
Cyanothece sp. PCC 8801 PCC8801_3053 -198 4.8 TGTAATCATAGTTACA
Microcystis aeruginosa NIES-843 MAE_14410 -75 3.7 TGTAAACTGGGAAACA
Nostoc sp. PCC 7120 alr3982 -250 4.6 TGTAGTGATAGCTACA
Trichodesmium erythraeum IMS101 Tery_3912 -156 4.3 TGTAGTTATGGCTACC
Position: -106
Score: 4.1
Sequence: TGTATTCACTTATACT
Locus tag: AmaxDRAFT_2765
AmaxDRAFT_2765 -106 4.1 TGTATTCACTTATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0076
Ortholog function: hypothetical protein
Cyanothece sp. PCC 7425 Cyan7425_0729 -128 4.3 TGTAACATTTGTTATT
-71 4.1 AGTATTGGTGGATACA
Nostoc sp. PCC 7120 asr0064 -107 3.7 CGTATAGCAAAATACA
Trichodesmium erythraeum IMS101 Tery_2891 -191 4.1 TGTAATTTAGACAACA
-110 4.6 TGTAACTATATATACT
Thermosynechococcus elongatus BP-1 tsr2448 -63 4.1 AGTATTGGATATTACA
Position: -112
Score: 4.4
Sequence: TGTAGCACTCAATACA
Locus tag: AmaxDRAFT_3347
AmaxDRAFT_3347 -112 4.4 TGTAGCACTCAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002 SYNPCC7002_A1630 -125 3.5 TGTgACccAgacTACA
Synechocystis sp. PCC 6803 slr1756 -98 4.3 GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142 cce_4432 -89 4.5 AGTATCCAATTATACA
-30 4 TGTATATATTGAAACC
Cyanothece sp. PCC 8801 PCC8801_0808 -92 4 CGTATCATGGTATACA
Cyanothece sp. PCC 7425 Cyan7425_1839 -221 4.9 TGTAACTCATGATACA
Microcystis aeruginosa NIES-843 MAE_19270 -92 4.7 TGTATCgaAaaATACA
Nostoc sp. PCC 7120 alr2328 -142 4.8 TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_3834 -250 4 CGTAACACCCGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_2156 -194 4.8 TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313 PMT0601 -79 4.2 GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1363 -138 4.3 CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421 gvip146 -116 4 CGTATCTCAGACTACA
Position: -77
Score: 4.4
Sequence: TGTATTGAGTGCTACA
Locus tag: AmaxDRAFT_3348
AmaxDRAFT_3348 -77 4.4 TGTATTGAGTGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcF
Ortholog function: phycobilisome core component
Cyanothece sp. ATCC 51142 cce_1944 -177 3.8 TGTGATAAGAAATACA
Cyanothece sp. PCC 8801 PCC8801_0807 -251 4 TGTATACCATGATACG
Cyanothece sp. PCC 7425 Cyan7425_1838 -281 4.9 TGTATCATGAGTTACA
Nostoc sp. PCC 7120 all2327 -233 4.8 TGTAGTCTTTGTTACA
Synechococcus elongatus PCC 7942 Synpcc7942_2158 -214 4.8 TGTAACAGCTGATACA
Position: -329
Score: 3.4
Sequence: TGTAATCAGATTTAAA
Locus tag: AmaxDRAFT_3478
AmaxDRAFT_3478 -329 3.4 TGTAATCAGATTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltS
Ortholog function: Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)
Nostoc sp. PCC 7120 alr4344 -265 3.5 TGGAAAAATTAAAACA
Trichodesmium erythraeum IMS101 Tery_0466 -228 4.2 TGTATCCTAGGCAACA
Position: -30
Score: 3.9
Sequence: GGTATTCAAAAATACT
Locus tag: AmaxDRAFT_3713
AmaxDRAFT_3713 -30 3.9 GGTATTCAAAAATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002 SYNPCC7002_A1827 -111 4 CGTAGTTAACACTACA
Synechocystis sp. PCC 6803 slr0898 -74 4.7 TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142 cce_1223 -76 4.7 TGTTACATTAGCTACA
Cyanothece sp. PCC 8801 PCC8801_2468 -75 4.6 TGTTACAATTAATACA
Cyanothece sp. PCC 7425 Cyan7425_4573 -123 4.5 TGTAACTTAATATACC
Microcystis aeruginosa NIES-843 MAE_18410 -190 4.1 TGTTACAGACAATACA
Trichodesmium erythraeum IMS101 Tery_1068 -276 3.8 TGTATTTTTATATAGT
-199 4.1 TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942 Synpcc7942_1240 -220 4.9 TGTAGCAATTGCTACT
-149 4.3 AGTATCAATGATTACT
-80 4.4 TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab CYA_0612 -72 3.9 TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421 gvip212 -146 4 TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1 tlr1349 -82 4.6 AGTAGCAAAATTTACA
Position: -163
Score: 3.8
Sequence: CGTAAAATAAAAAACA
Position: -137
Score: 4.3
Sequence: TGTAGTTGCCGATACA
Locus tag: AmaxDRAFT_3857
AmaxDRAFT_3857 -163 3.8 CGTAAAATAAAAAACA
-137 4.3 TGTAGTTGCCGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrtA
Ortholog function: Nitrate/nitrite ABC transporter, substrate-binding protein
Synechocystis sp. PCC 6803 sll1450 -96 3.9 AGTTACAAACTATACA
Cyanothece sp. PCC 8801 PCC8801_4396 -184 4.6 TGTAGCAAATAATACG
-106 3.9 AGTATTTATAGACACA
Cyanothece sp. PCC 7425 Cyan7425_4572 -123 4.5 TGTAACTTAATATACC
Microcystis aeruginosa NIES-843 MAE_14800 -177 4.2 TGTAACAATCTATACG
Synechococcus elongatus PCC 7942 Synpcc7942_1239 -220 4.9 TGTAGCAATTGCTACT
-149 4.3 AGTATCAATGATTACT
-80 4.4 TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab CYA_0613 -72 3.9 TGTAACTGCCAATACC
Thermosynechococcus elongatus BP-1 tlr1350 -82 4.6 AGTAGCAAAATTTACA
Position: -350
Score: 4
Sequence: TGTATTGCAGTATACA
Locus tag: AmaxDRAFT_4502
AmaxDRAFT_4502 -350 4 TGTATTGCAGTATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002 SYNPCC7002_A2208 -52 3.7 GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803 sll0108 -189 4 AGTAGTAAATCATACA
-18 4.4 TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142 cce_3261 -152 3.5 TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801 PCC8801_1229 -264 5 TGTATTTTTTGATACA
-229 4.1 AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843 MAE_40010 -213 4.6 TGTATCAACGAATACA
Trichodesmium erythraeum IMS101 Tery_4477 -83 4.9 AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_0442 -151 4.1 TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313 PMT1853 -160 3.8 TGTAACAAAATGAACT
Synechococcus sp. WH 8102 SYNW0253 -100 4.2 TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1 amt1 -190 4.4 TGTATAACGTGATACA
Position: -273
Score: 3.6
Sequence: ACTTACAAATACTACA
Locus tag: AmaxDRAFT_4514
AmaxDRAFT_4514 -273 3.6 ACTTACAAATACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: Isocitrate dehydrogenase (NADP+)
Microcystis aeruginosa NIES-843 MAE_62530 -30 3.7 CGTATAGATAAATACT
Nostoc sp. PCC 7120 alr1827 -6 3.4 TGAAATATGTACAACA
Position: -89
Score: 3.3
Sequence: TGTATCTGTACCTGCA
Locus tag: AmaxDRAFT_4747
AmaxDRAFT_4747 -89 3.3 TGTATCTGTACCTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbZ
Ortholog function: Photosystem II reaction center protein Z
Cyanothece sp. ATCC 51142 cce_3633 -20 4.2 TGTAACTGTATTAACA
Nostoc sp. PCC 7120 all1258 -161 3.4 TGTTACAAAAATTAGG
Position: -84
Score: 4.5
Sequence: TGTAGCAATTTTTACC
Locus tag: AmaxDRAFT_4787
AmaxDRAFT_4787 -84 4.5 TGTAGCAATTTTTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: Nitrogen assimilation transcriptional activator, LysR family
Synechococcus sp. PCC 7002 SYNPCC7002_A1632 -87 3.9 TGTAACATccGgaACA
Cyanothece sp. ATCC 51142 cce_0198 -73 4.2 AGTATCAATTTCTACG
Cyanothece sp. PCC 8801 PCC8801_2329 -80 4.7 TGTATCAAATTCTACT
Cyanothece sp. PCC 7425 Cyan7425_1599 -78 4.6 TGTATCACTATCTACA
Microcystis aeruginosa NIES-843 MAE_09380 -80 4.1 gGTAgCAatTtcTACc
Nostoc sp. PCC 7120 all0602 -80 4.5 TGTAACAAAATCTACC
-21 4.7 TGTAATTAAGGCTACA
Trichodesmium erythraeum IMS101 Tery_4333 -27 4 TGTATAAAATAACACA
Synechococcus elongatus PCC 7942 Synpcc7942_1242 -153 4.3 AGTAATCATTGATACT
-82 4.9 AGTAGCAATTGCTACA
Synechococcus sp. JA-3-3Ab CYA_0984 -89 4.2 TGTAACGGTGTTTACA
Gloeobacter violaceus PCC 7421 gvip213 -46 4 CGTAACCCCAGATACA
Thermosynechococcus elongatus BP-1 null -122 3.9 TGTATCAATCAACACA