Propagation of NtcA regulog to Arthrospira maxima CS-328
| Source regulog: | NtcA - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Nitrogen assimilation |
| Effector: | 2-oxoglutarate |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Arthrospira maxima CS-328 |
| Orthologous TF(s) | AmaxDRAFT_4666 |
| Regulated genes | 29 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -35
Score: 3.5 Sequence: AGCAGTTTGTATTACA
Locus tag: AmaxDRAFT_0569
|
||||
| AmaxDRAFT_0569 | -35 | 3.5 | AGCAGTTTGTATTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: coxC | ||||
| Ortholog function: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) | ||||
| Cyanothece sp. PCC 8801 | PCC8801_0569 | -148 | 3.8 | TTTATTATTTGTTACC |
| Microcystis aeruginosa NIES-843 | MAE_22950 | -141 | 3.8 | AGTTATTTTAAATACT |
| Nostoc sp. PCC 7120 | alr2516 | -291 | 3.5 | AGAAGTAGAAGCTACT |
|
Position: -77
Score: 4.3 Sequence: GGTAGCAGGAGTTACA
Locus tag: AmaxDRAFT_0729
|
||||
| AmaxDRAFT_0729 | -77 | 4.3 | GGTAGCAGGAGTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrrA | ||||
| Ortholog function: Transcriptional regulator, OmpR family | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0496 | -75 | 4.1 | CGTAACCACGGTTACA |
| Synechocystis sp. PCC 6803 | sll1330 | -75 | 4.6 | GGTAACTGTTGTTACA |
| Cyanothece sp. ATCC 51142 | cce_1808 | -76 | 4.3 | CGTAGCCGATGTTACA |
| Cyanothece sp. PCC 8801 | PCC8801_3375 | -76 | 4.5 | CGTAGCAGATGTTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_0851 | -82 | 4.1 | AGTAGCTAGAGTTACG |
| Nostoc sp. PCC 7120 | all4312 | -75 | 4.5 | AGTAACAAAGACTACA |
| Trichodesmium erythraeum IMS101 | Tery_0675 | -89 | 4.7 | AGTAGCTTCTGTTACA |
| Thermosynechococcus elongatus BP-1 | tlr1330 | -138 | 4 | AGTATTATTCGTTACG |
|
Position: -250
Score: 4 Sequence: TGTATCACGATTTACC
Locus tag: AmaxDRAFT_1137
|
||||
| AmaxDRAFT_1137 | -250 | 4 | TGTATCACGATTTACC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnB | ||||
| Ortholog function: nitrogen regulatory protein P-II | ||||
| Synechocystis sp. PCC 6803 | ssl0707 | -184 | 3.7 | GGTACTGATTTTTACA |
| Nostoc sp. PCC 7120 | all2319 | -214 | 3.8 | AGTTACACAGACTACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_0321 | -103 | 4.8 | TGTAGCAGTAACTACA |
| Synechococcus sp. JA-3-3Ab | CYA_1508 | -74 | 4.5 | TGTATCCGTTTTTACA |
| Thermosynechococcus elongatus BP-1 | tll0591 | -80 | 5.1 | TGTAGCTATTGCTACA |
|
Position: -111
Score: 4.2 Sequence: TGTAGTCTTTTGTACA
Position: -39
Score: 3.5 Sequence: GGTAGAATGATTTACG
Locus tag: AmaxDRAFT_2046
|
||||
| AmaxDRAFT_2046 | -111 | 4.2 | TGTAGTCTTTTGTACA | |
| -39 | 3.5 | GGTAGAATGATTTACG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: trxA | ||||
| Ortholog function: Thioredoxin-1 | ||||
| Nostoc sp. PCC 7120 | alr0052 | 17 | 3.7 | AGTTACAGATTCTACT |
| Gloeobacter violaceus PCC 7421 | gll0880 | -379 | 3.6 | TGTATCTAGAACTAGC |
|
Position: -314
Score: 3.8 Sequence: AATAGATTTTAATACA
Locus tag: AmaxDRAFT_2576
|
||||
| AmaxDRAFT_2576 | -314 | 3.8 | AATAGATTTTAATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SYNPCC7002_A1954 | ||||
| Ortholog function: putative two-component sensor histidine kinase | ||||
| Cyanothece sp. PCC 8801 | PCC8801_3053 | -198 | 4.8 | TGTAATCATAGTTACA |
| Microcystis aeruginosa NIES-843 | MAE_14410 | -75 | 3.7 | TGTAAACTGGGAAACA |
| Nostoc sp. PCC 7120 | alr3982 | -250 | 4.6 | TGTAGTGATAGCTACA |
| Trichodesmium erythraeum IMS101 | Tery_3912 | -156 | 4.3 | TGTAGTTATGGCTACC |
|
Position: -106
Score: 4.1 Sequence: TGTATTCACTTATACT
Locus tag: AmaxDRAFT_2765
|
||||
| AmaxDRAFT_2765 | -106 | 4.1 | TGTATTCACTTATACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SYNPCC7002_A0076 | ||||
| Ortholog function: hypothetical protein | ||||
| Cyanothece sp. PCC 7425 | Cyan7425_0729 | -128 | 4.3 | TGTAACATTTGTTATT |
| -71 | 4.1 | AGTATTGGTGGATACA | ||
| Nostoc sp. PCC 7120 | asr0064 | -107 | 3.7 | CGTATAGCAAAATACA |
| Trichodesmium erythraeum IMS101 | Tery_2891 | -191 | 4.1 | TGTAATTTAGACAACA |
| -110 | 4.6 | TGTAACTATATATACT | ||
| Thermosynechococcus elongatus BP-1 | tsr2448 | -63 | 4.1 | AGTATTGGATATTACA |
|
Position: -112
Score: 4.4 Sequence: TGTAGCACTCAATACA
Locus tag: AmaxDRAFT_3347
|
||||
| AmaxDRAFT_3347 | -112 | 4.4 | TGTAGCACTCAATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: glutamine synthetase, type I | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1630 | -125 | 3.5 | TGTgACccAgacTACA |
| Synechocystis sp. PCC 6803 | slr1756 | -98 | 4.3 | GGTAGCGAAAAATACA |
| Cyanothece sp. ATCC 51142 | cce_4432 | -89 | 4.5 | AGTATCCAATTATACA |
| -30 | 4 | TGTATATATTGAAACC | ||
| Cyanothece sp. PCC 8801 | PCC8801_0808 | -92 | 4 | CGTATCATGGTATACA |
| Cyanothece sp. PCC 7425 | Cyan7425_1839 | -221 | 4.9 | TGTAACTCATGATACA |
| Microcystis aeruginosa NIES-843 | MAE_19270 | -92 | 4.7 | TGTATCgaAaaATACA |
| Nostoc sp. PCC 7120 | alr2328 | -142 | 4.8 | TGTAACAAAGACTACA |
| Trichodesmium erythraeum IMS101 | Tery_3834 | -250 | 4 | CGTAACACCCGATACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2156 | -194 | 4.8 | TGTATCAgcTGTTACA |
| Prochlorococcus marinus str. MIT 9313 | PMT0601 | -79 | 4.2 | GGTACCTGTTGCTACA |
| Synechococcus sp. JA-3-3Ab | CYA_1363 | -138 | 4.3 | CGTATCAGAAACTACA |
| Gloeobacter violaceus PCC 7421 | gvip146 | -116 | 4 | CGTATCTCAGACTACA |
|
Position: -77
Score: 4.4 Sequence: TGTATTGAGTGCTACA
Locus tag: AmaxDRAFT_3348
|
||||
| AmaxDRAFT_3348 | -77 | 4.4 | TGTATTGAGTGCTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: apcF | ||||
| Ortholog function: phycobilisome core component | ||||
| Cyanothece sp. ATCC 51142 | cce_1944 | -177 | 3.8 | TGTGATAAGAAATACA |
| Cyanothece sp. PCC 8801 | PCC8801_0807 | -251 | 4 | TGTATACCATGATACG |
| Cyanothece sp. PCC 7425 | Cyan7425_1838 | -281 | 4.9 | TGTATCATGAGTTACA |
| Nostoc sp. PCC 7120 | all2327 | -233 | 4.8 | TGTAGTCTTTGTTACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2158 | -214 | 4.8 | TGTAACAGCTGATACA |
|
Position: -329
Score: 3.4 Sequence: TGTAATCAGATTTAAA
Locus tag: AmaxDRAFT_3478
|
||||
| AmaxDRAFT_3478 | -329 | 3.4 | TGTAATCAGATTTAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltS | ||||
| Ortholog function: Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13) | ||||
| Nostoc sp. PCC 7120 | alr4344 | -265 | 3.5 | TGGAAAAATTAAAACA |
| Trichodesmium erythraeum IMS101 | Tery_0466 | -228 | 4.2 | TGTATCCTAGGCAACA |
|
Position: -30
Score: 3.9 Sequence: GGTATTCAAAAATACT
Locus tag: AmaxDRAFT_3713
|
||||
| AmaxDRAFT_3713 | -30 | 3.9 | GGTATTCAAAAATACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirA | ||||
| Ortholog function: Nitrite reductase, ferredoxin dependent | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1827 | -111 | 4 | CGTAGTTAACACTACA |
| Synechocystis sp. PCC 6803 | slr0898 | -74 | 4.7 | TGTAATTTACGTTACA |
| Cyanothece sp. ATCC 51142 | cce_1223 | -76 | 4.7 | TGTTACATTAGCTACA |
| Cyanothece sp. PCC 8801 | PCC8801_2468 | -75 | 4.6 | TGTTACAATTAATACA |
| Cyanothece sp. PCC 7425 | Cyan7425_4573 | -123 | 4.5 | TGTAACTTAATATACC |
| Microcystis aeruginosa NIES-843 | MAE_18410 | -190 | 4.1 | TGTTACAGACAATACA |
| Trichodesmium erythraeum IMS101 | Tery_1068 | -276 | 3.8 | TGTATTTTTATATAGT |
| -199 | 4.1 | TGTTATATAAGCTACG | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_1240 | -220 | 4.9 | TGTAGCAATTGCTACT |
| -149 | 4.3 | AGTATCAATGATTACT | ||
| -80 | 4.4 | TGTAGTTTCTGTTACC | ||
| Synechococcus sp. JA-3-3Ab | CYA_0612 | -72 | 3.9 | TGTAACTGCCAATACC |
| Gloeobacter violaceus PCC 7421 | gvip212 | -146 | 4 | TGTATCTGGGGTTACG |
| Thermosynechococcus elongatus BP-1 | tlr1349 | -82 | 4.6 | AGTAGCAAAATTTACA |
|
Position: -163
Score: 3.8 Sequence: CGTAAAATAAAAAACA
Position: -137
Score: 4.3 Sequence: TGTAGTTGCCGATACA
Locus tag: AmaxDRAFT_3857
|
||||
| AmaxDRAFT_3857 | -163 | 3.8 | CGTAAAATAAAAAACA | |
| -137 | 4.3 | TGTAGTTGCCGATACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrtA | ||||
| Ortholog function: Nitrate/nitrite ABC transporter, substrate-binding protein | ||||
| Synechocystis sp. PCC 6803 | sll1450 | -96 | 3.9 | AGTTACAAACTATACA |
| Cyanothece sp. PCC 8801 | PCC8801_4396 | -184 | 4.6 | TGTAGCAAATAATACG |
| -106 | 3.9 | AGTATTTATAGACACA | ||
| Cyanothece sp. PCC 7425 | Cyan7425_4572 | -123 | 4.5 | TGTAACTTAATATACC |
| Microcystis aeruginosa NIES-843 | MAE_14800 | -177 | 4.2 | TGTAACAATCTATACG |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1239 | -220 | 4.9 | TGTAGCAATTGCTACT |
| -149 | 4.3 | AGTATCAATGATTACT | ||
| -80 | 4.4 | TGTAGTTTCTGTTACC | ||
| Synechococcus sp. JA-3-3Ab | CYA_0613 | -72 | 3.9 | TGTAACTGCCAATACC |
| Thermosynechococcus elongatus BP-1 | tlr1350 | -82 | 4.6 | AGTAGCAAAATTTACA |
|
Position: -350
Score: 4 Sequence: TGTATTGCAGTATACA
Locus tag: AmaxDRAFT_4502
|
||||
| AmaxDRAFT_4502 | -350 | 4 | TGTATTGCAGTATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amt1 | ||||
| Ortholog function: ammonium transporter | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2208 | -52 | 3.7 | GGTTACTTCTGCTACC |
| Synechocystis sp. PCC 6803 | sll0108 | -189 | 4 | AGTAGTAAATCATACA |
| -18 | 4.4 | TGTAGATTAAAGTACA | ||
| Cyanothece sp. ATCC 51142 | cce_3261 | -152 | 3.5 | TGTtAaggtTGTaACA |
| Cyanothece sp. PCC 8801 | PCC8801_1229 | -264 | 5 | TGTATTTTTTGATACA |
| -229 | 4.1 | AGTAATAAAAAAAACA | ||
| Microcystis aeruginosa NIES-843 | MAE_40010 | -213 | 4.6 | TGTATCAACGAATACA |
| Trichodesmium erythraeum IMS101 | Tery_4477 | -83 | 4.9 | AGTAGCATTTGATACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_0442 | -151 | 4.1 | TGTTACATCGATTACA |
| Prochlorococcus marinus str. MIT 9313 | PMT1853 | -160 | 3.8 | TGTAACAAAATGAACT |
| Synechococcus sp. WH 8102 | SYNW0253 | -100 | 4.2 | TGTATCAATTAACACA |
| Thermosynechococcus elongatus BP-1 | amt1 | -190 | 4.4 | TGTATAACGTGATACA |
|
Position: -273
Score: 3.6 Sequence: ACTTACAAATACTACA
Locus tag: AmaxDRAFT_4514
|
||||
| AmaxDRAFT_4514 | -273 | 3.6 | ACTTACAAATACTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: icd | ||||
| Ortholog function: Isocitrate dehydrogenase (NADP+) | ||||
| Microcystis aeruginosa NIES-843 | MAE_62530 | -30 | 3.7 | CGTATAGATAAATACT |
| Nostoc sp. PCC 7120 | alr1827 | -6 | 3.4 | TGAAATATGTACAACA |
|
Position: -89
Score: 3.3 Sequence: TGTATCTGTACCTGCA
Locus tag: AmaxDRAFT_4747
|
||||
| AmaxDRAFT_4747 | -89 | 3.3 | TGTATCTGTACCTGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: psbZ | ||||
| Ortholog function: Photosystem II reaction center protein Z | ||||
| Cyanothece sp. ATCC 51142 | cce_3633 | -20 | 4.2 | TGTAACTGTATTAACA |
| Nostoc sp. PCC 7120 | all1258 | -161 | 3.4 | TGTTACAAAAATTAGG |
|
Position: -84
Score: 4.5 Sequence: TGTAGCAATTTTTACC
Locus tag: AmaxDRAFT_4787
|
||||
| AmaxDRAFT_4787 | -84 | 4.5 | TGTAGCAATTTTTACC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ntcB | ||||
| Ortholog function: Nitrogen assimilation transcriptional activator, LysR family | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1632 | -87 | 3.9 | TGTAACATccGgaACA |
| Cyanothece sp. ATCC 51142 | cce_0198 | -73 | 4.2 | AGTATCAATTTCTACG |
| Cyanothece sp. PCC 8801 | PCC8801_2329 | -80 | 4.7 | TGTATCAAATTCTACT |
| Cyanothece sp. PCC 7425 | Cyan7425_1599 | -78 | 4.6 | TGTATCACTATCTACA |
| Microcystis aeruginosa NIES-843 | MAE_09380 | -80 | 4.1 | gGTAgCAatTtcTACc |
| Nostoc sp. PCC 7120 | all0602 | -80 | 4.5 | TGTAACAAAATCTACC |
| -21 | 4.7 | TGTAATTAAGGCTACA | ||
| Trichodesmium erythraeum IMS101 | Tery_4333 | -27 | 4 | TGTATAAAATAACACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1242 | -153 | 4.3 | AGTAATCATTGATACT |
| -82 | 4.9 | AGTAGCAATTGCTACA | ||
| Synechococcus sp. JA-3-3Ab | CYA_0984 | -89 | 4.2 | TGTAACGGTGTTTACA |
| Gloeobacter violaceus PCC 7421 | gvip213 | -46 | 4 | CGTAACCCCAGATACA |
| Thermosynechococcus elongatus BP-1 | null | -122 | 3.9 | TGTATCAATCAACACA |