Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Crp regulog to Thermosynechococcus elongatus BP-1

Reference regulog properties
Source regulog: Crp - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process:
Effector: Cyclic 3',5'-AMP
Phylum: Cyanobacteria
Propagated regulon:
Target genome Thermosynechococcus elongatus BP-1
Orthologous TF(s) tll2136 (deprecated)
Regulated genes 11
Built upon 106 sites [see more]
Predicted regulatory interactions in Thermosynechococcus elongatus BP-1
Locus tag Position Score Sequence
Position: -317
Score: 4.8
Sequence: GGTGATCTGAGTCACA
Locus tag: tlr0333
tlr0333 -317 4.8 GGTGATCTGAGTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rlpA
Ortholog function: Predicted lipoprotein A
Cyanothece sp. ATCC 51142 cce_3687 -215 4 TGTTAACTAGATCACA
Cyanothece sp. PCC 8801 PCC8801_1079 -239 3.8 GGTGAAATTAGGCAAA
Cyanothece sp. PCC 7425 Cyan7425_3340 -328 4.2 CGTGATTCGGATCACA
Thermosynechococcus elongatus BP-1 tlr0333 -317 4.8 GGTGATCTGAGTCACA
Position: -174
Score: 4.7
Sequence: TGTGGTCAAGATCACA
Position: 21
Score: 3.9
Sequence: ACTGACCTAAAGCATT
Locus tag: tlr0738 (deprecated)
tlr0738 (deprecated) -174 4.7 TGTGGTCAAGATCACA
21 3.9 ACTGACCTAAAGCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sigF
Ortholog function: RNA polymerase sigma-37
Synechococcus sp. PCC 7002 SYNPCC7002_A1924 -223 4.3 TTTGATAAAAATCAAT
Cyanothece sp. PCC 8801 PCC8801_4329 -271 3.7 AGTGACCTAAATTCCG
Cyanothece sp. PCC 7425 Cyan7425_3949 -91 4.4 TGTGTTCTAGATCACT
Trichodesmium erythraeum IMS101 Tery_3916 -118 4.1 TGTGTTTGATATCACA
Thermosynechococcus elongatus BP-1 null -174 4.7 TGTGGTCAAGATCACA
Position: -146
Score: 3.5
Sequence: AATAATCAAAATCTCA
Position: 3
Score: 4.2
Sequence: ATTGATCTAAAACAAC
Locus tag: tlr1552 (deprecated)
tlr1552 (deprecated) -146 3.5 AATAATCAAAATCTCA
3 4.2 ATTGATCTAAAACAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: serS
Ortholog function: Seryl-tRNA synthetase (EC 6.1.1.11)
Synechocystis sp. PCC 6803 slr1703 -211 3.6 ATTGATAGAAGGCACT
Cyanothece sp. ATCC 51142 cce_0927 -170 4 GTTGATAAAGTTCATA
Cyanothece sp. PCC 8801 PCC8801_3186 -155 3.7 TTTGATCAATTTGACA
Cyanothece sp. PCC 7425 Cyan7425_4645 -420 3.7 TGTGATACATCACACC
Thermosynechococcus elongatus BP-1 null 3 4.2 ATTGATCTAAAACAAC
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