Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Thermosynechococcus elongatus BP-1

Reference regulog properties
Source regulog: Fur - Cyanobacteria
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Cyanobacteria
Propagated regulon:
Target genome Thermosynechococcus elongatus BP-1
Orthologous TF(s) tll0048 (deprecated)
Regulated genes 18
Built upon 167 sites [see more]
Predicted regulatory interactions in Thermosynechococcus elongatus BP-1
Locus tag Position Score Sequence
Position: -92
Score: 3.6
Sequence: ATTGCAACTCATTGGCAAA
Position: -59
Score: 4.4
Sequence: CATTGTAATTATTCTCAAT
Locus tag: tll0048 (deprecated)
tll0048 (deprecated) -92 3.6 ATTGCAACTCATTGGCAAA
-59 4.4 CATTGTAATTATTCTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fur
Ortholog function: Ferric uptake regulator, Fur family
Synechococcus sp. PCC 7002 SYNPCC7002_A1649 -88 3.5 GTTAGTATTTATTTGCAAT
Cyanothece sp. ATCC 51142 cce_2330 -96 5.1 GTTGCTAATTATTTTCAAT
Cyanothece sp. PCC 8801 PCC8801_0870 -97 4.6 GTTGCAAATTATTTGCAAT
Trichodesmium erythraeum IMS101 Tery_1958 -44 4.7 ATTGTGTATCATTGTCAAT
Thermosynechococcus elongatus BP-1 null -59 4.4 CATTGTAATTATTCTCAAT
Position: -217
Score: 3.3
Sequence: TTTGCAATTTGTTACCACA
Locus tag: tlr0271 (deprecated)
tlr0271 (deprecated) -217 3.3 TTTGCAATTTGTTACCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlH
Ortholog function: Protoporphyrin IX magnesium chelatase, subunit H
Synechococcus sp. PCC 7002 SYNPCC7002_A1018 -57 3.8 ATAGTTATAAATTTTTAAT
Cyanothece sp. ATCC 51142 cce_4358 -183 2.7 AATAAATAATTTTTGTAAA
-138 2.3 ATTTGTCAATATTTGTAAC
Cyanothece sp. PCC 8801 PCC8801_4320 -186 2.3 ATTTGTCAATATTTGTAAC
Microcystis aeruginosa NIES-843 MAE_12190 -247 2.8 ATTAAATATTAATTTTTGT
Nostoc sp. PCC 7120 all4365 -272 2.9 GTTTTTTATTTTTTTCATC
-232 3 AATATTAATTTTTCTTTAC
Trichodesmium erythraeum IMS101 Tery_3224 -65 3 GTTTAAAATTTTTTGATAT
Position: -99
Score: 3.1
Sequence: GATTAGAGTCGTTATTAAG
Locus tag: tlr0455 (deprecated)
tlr0455 (deprecated) -99 3.1 GATTAGAGTCGTTATTAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbD
Ortholog function: Photosystem II, reaction center protein
Synechocystis sp. PCC 6803 sll0849 -298 3.3 AATGTAAAATATTTGCTAA
Cyanothece sp. ATCC 51142 cce_0660 -298 3.4 ATTGTAAATTTTTTGCTAA
Cyanothece sp. PCC 7425 Cyan7425_5031 -91 3.1 GTTTATAAACTTTCGTAAA
Microcystis aeruginosa NIES-843 MAE_41160 -274 2.9 ATTTGTAATTTTTTGCTAA
Synechococcus sp. JA-3-3Ab CYA_2647 -106 3 TTTATTAATTTTTCGTAAG
Position: -24
Score: 3.7
Sequence: ATCGAGCTGAATTCTCGAT
Locus tag: tlr0499 (deprecated)
tlr0499 (deprecated) -24 3.7 ATCGAGCTGAATTCTCGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sigC
Ortholog function: RNA polymerase sigma-subunit
Nostoc sp. PCC 7120 all1692 -320 3.5 AATAAACATAATTTTTACT
Position: -76
Score: 3.7
Sequence: ATTGCGAAAGAATTGCAAA
Locus tag: tll0513 (deprecated)
tll0513 (deprecated) -76 3.7 ATTGCGAAAGAATTGCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufA
Ortholog function: Fe ABC transport system, substrate-binding protein
Cyanothece sp. PCC 7425 Cyan7425_3508 -165 3.5 ATTAGGAATGAATCGTAAT
Trichodesmium erythraeum IMS101 Tery_3377 -97 4.4 ATTAAGAATAAATTGCAAT
Position: -153
Score: 3.5
Sequence: AATGTTAATTATCGGCAAA
Position: -55
Score: 3.6
Sequence: ATTCACGATTCTTCACAAT
Locus tag: tlr0731 (deprecated)
tlr0731 (deprecated) -153 3.5 AATGTTAATTATCGGCAAA
-55 3.6 ATTCACGATTCTTCACAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: psaA
Ortholog function: Photosystem I P700 chlorophyll A apoprotein A1
Cyanothece sp. PCC 7425 Cyan7425_4671 -292 3.4 TCTATGAATTTTTATTAAT
Position: -45
Score: 4
Sequence: AATTAAAATTATATTCATC
Locus tag: tll0769 (deprecated)
tll0769 (deprecated) -45 4 AATTAAAATTATATTCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: cce_4396
Ortholog function: Predicted transcription regualator, ArsR family
Cyanothece sp. PCC 7425 Cyan7425_2984 -78 2.7 TATATGAATATCTTGTAAT
-48 3.9 ATTGCAATTATATTACAAT
Synechococcus elongatus PCC 7942 Synpcc7942_0938 -30 4 AATAAAAAAGTTTCGTAAT
Thermosynechococcus elongatus BP-1 null -45 4 AATTAAAATTATATTCATC
Position: -25
Score: 3.4
Sequence: CTTCACAAAAGGTAACAAT
Locus tag: tll0889 (deprecated)
tll0889 (deprecated) -25 3.4 CTTCACAAAAGGTAACAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0913
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0913 -146 2.2 TTTTTACAACATTTTTAAA
-68 3.8 AATGAGAAAATTTTGATAT
Synechocystis sp. PCC 6803 sll1911 -59 4.2 GTTGTTAAAATTTAACAAT
Cyanothece sp. ATCC 51142 cce_0019 -75 3.1 TTTTTTAATATTTTTTGAT
Cyanothece sp. PCC 8801 PCC8801_2812 -67 4.4 TATGATAAAATTTATTAAA
Trichodesmium erythraeum IMS101 Tery_4773 -64 2.4 TTTATGAAATATTTATGAT
Position: -212
Score: 3.2
Sequence: TATCTTTACATTTCTCAAG
Position: -128
Score: 4
Sequence: CTTGCTAAATGCTATTAAT
Position: -121
Score: 5.5
Sequence: AATGCTATTAATTCTCAAT
Position: -111
Score: 3
Sequence: ATTCTCAATAATCTGCTAT
Position: -76
Score: 4.6
Sequence: ATTGAGACAGATATTCAAT
Position: 6
Score: 3
Sequence: ATCGCCAGTGAATCTCCAA
Locus tag: tlr1050 (deprecated)
tlr1050 (deprecated) -212 3.2 TATCTTTACATTTCTCAAG
-128 4 CTTGCTAAATGCTATTAAT
-121 5.5 AATGCTATTAATTCTCAAT
-111 3 ATTCTCAATAATCTGCTAT
-76 4.6 ATTGAGACAGATATTCAAT
6 3 ATCGCCAGTGAATCTCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: isiA
Ortholog function: Photosystem II chlorophyll-binding protein
Synechocystis sp. PCC 6803 sll0247 -269 2.8 ATTTCTTAATAATTTTAGT
Cyanothece sp. ATCC 51142 cce_1785 -18 4.4 ATTGCAAATCTTTTTAAAT
Cyanothece sp. PCC 7425 Cyan7425_2434 -61 4.7 ATTGAGTTTATTTCTCAAC
Nostoc sp. PCC 7120 all4001 -161 4.8 ATTAAGAATCTTTTTCAAT
Trichodesmium erythraeum IMS101 Tery_1667 -156 3.2 TTTTATAATTTCTTTTAAA
Synechococcus elongatus PCC 7942 Synpcc7942_1542 -45 5.2 ATTGAGAATTATTGTAAAT
Thermosynechococcus elongatus BP-1 null -121 5.5 AATGCTATTAATTCTCAAT
Position: -120
Score: 3.6
Sequence: ACTGCAAATAATTTCCAAC
Position: 22
Score: 3.6
Sequence: ATTGCAGACAGTTCACTTT
Locus tag: tll1492 (deprecated)
tll1492 (deprecated) -120 3.6 ACTGCAAATAATTTCCAAC
22 3.6 ATTGCAGACAGTTCACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: afuC
Ortholog function: Predicted Fe(3+) ABC transport system, ATP-binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0871 -83 5.1 GTTGAGAATAGTTCTTAAT
Cyanothece sp. ATCC 51142 cce_3801 -163 4.2 ATTGAAAATTAATGCTAAT
Cyanothece sp. PCC 7425 Cyan7425_3510 -105 5.3 ATTGAGAATAATTTTCAAA
-60 4 GTTGAATAATAGTCTTAAT
Microcystis aeruginosa NIES-843 MAE_12460 -117 4.4 TTTGAGAAAGTTTCCTAAT
Trichodesmium erythraeum IMS101 Tery_3222 -94 5.1 AATGAAAAAAATATTCAAT
Synechococcus elongatus PCC 7942 Synpcc7942_1406 -81 4.2 ATTGAGAATAAATCGCAGA
Synechococcus sp. JA-3-3Ab CYA_2794 -26 3.8 AGTGAAAATCTTTTGCAAC
Gloeobacter violaceus PCC 7421 gll1012 -64 3.7 ATTGACAATTAATTGCAGC
Position: -174
Score: 3.4
Sequence: TATACAAAAATTTAGCGTT
Position: -152
Score: 3.2
Sequence: ATGAACAAATTTTATTAAG
Locus tag: tll1529 (deprecated)
tll1529 (deprecated) -174 3.4 TATACAAAAATTTAGCGTT
-152 3.2 ATGAACAAATTTTATTAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdx
Ortholog function: Predicted ferredoxin
Nostoc sp. PCC 7120 asl0884 -90 3.5 ATTCTTAATTTTTTGTAAT
Synechococcus sp. JA-3-3Ab CYA_0643 -92 2.8 ATTAAAAATATGATTTAAA
Position: -277
Score: 3.1
Sequence: CTTGATATTTCGTAAGAAT
Position: -143
Score: 3
Sequence: AAGGGAAGGGTTTCTTATT
Locus tag: tlr1630 (deprecated)
tlr1630 (deprecated) -277 3.1 CTTGATATTTCGTAAGAAT
-143 3 AAGGGAAGGGTTTCTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbD
Ortholog function: Photosystem II, reaction center protein
Synechocystis sp. PCC 6803 sll0849 -298 3.3 AATGTAAAATATTTGCTAA
Cyanothece sp. ATCC 51142 cce_0660 -298 3.4 ATTGTAAATTTTTTGCTAA
Cyanothece sp. PCC 7425 Cyan7425_5031 -91 3.1 GTTTATAAACTTTCGTAAA
Microcystis aeruginosa NIES-843 MAE_41160 -274 2.9 ATTTGTAATTTTTTGCTAA
Synechococcus sp. JA-3-3Ab CYA_2647 -106 3 TTTATTAATTTTTCGTAAG
Position: -135
Score: 3.8
Sequence: ATTTAGTTTTACTAACAAT
Position: -56
Score: 3.7
Sequence: GTTGATGACTGTTTTCAAG
Locus tag: tlr1843 (deprecated)
tlr1843 (deprecated) -135 3.8 ATTTAGTTTTACTAACAAT
-56 3.7 GTTGATGACTGTTTTCAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbA
Ortholog function: photosystem II, reaction center protein
Cyanothece sp. PCC 7425 Cyan7425_1059 -182 3.4 ATTATTAATAAGTTTCAAA
Thermosynechococcus elongatus BP-1 null -135 3.8 ATTTAGTTTTACTAACAAT
Position: -13
Score: 3.8
Sequence: ATTCATAACGACTATGACT
Locus tag: tlr1844 (deprecated)
tlr1844 (deprecated) -13 3.8 ATTCATAACGACTATGACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbA
Ortholog function: photosystem II, reaction center protein
Cyanothece sp. PCC 7425 Cyan7425_1059 -182 3.4 ATTATTAATAAGTTTCAAA
Thermosynechococcus elongatus BP-1 null -135 3.8 ATTTAGTTTTACTAACAAT
Position: -83
Score: 3.1
Sequence: AAAGCTATAGATTTTCACG
Locus tag: tll1894 (deprecated)
tll1894 (deprecated) -83 3.1 AAAGCTATAGATTTTCACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ctaA
Ortholog function: Heme A synthase
Cyanothece sp. PCC 8801 PCC8801_0256 -185 2.2 TTTTATTAACTTATGTAAA
Microcystis aeruginosa NIES-843 MAE_22920 -282 2.5 TCTTTTCAATATTTTTAAT
Trichodesmium erythraeum IMS101 Tery_1780 -278 3.5 ATTGTTAAAATTATGAAAT
-167 3.3 ATTAAAAAAAAATTTAAAA
Synechococcus elongatus PCC 7942 Synpcc7942_2601 -158 4.3 GATGACAATATTTTTCGAT
Prochlorococcus marinus str. MIT 9313 PMT1340 -30 2.6 ATTTAAATTATTTTATTGT
Position: -157
Score: 3.1
Sequence: AATTATGAACTTTTGTAAT
Position: -147
Score: 3.2
Sequence: TTTTGTAATACTTCGCAAC
Locus tag: tlr2034 (deprecated)
tlr2034 (deprecated) -157 3.1 AATTATGAACTTTTGTAAT
-147 3.2 TTTTGTAATACTTCGCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcF
Ortholog function: Allophycocyanin, beta subunit
Synechococcus sp. PCC 7002 SYNPCC7002_A1631 -257 3.3 TTTTATTATTTTTTTTAAA
Cyanothece sp. ATCC 51142 cce_1944 -151 4.4 ATTGCTAAAATCTATAATT
Cyanothece sp. PCC 7425 Cyan7425_1838 -245 3 TTTTATATTATCTTTTAAC
Thermosynechococcus elongatus BP-1 null -157 3.1 AATTATGAACTTTTGTAAT
Position: -269
Score: 3
Sequence: GCAGACAAACTTTAGCTTT
Position: -173
Score: 3
Sequence: CAAAAAAATGAAAATTAAT
Position: -167
Score: 4.1
Sequence: AATGAAAATTAATTTCTTA
Position: -115
Score: 3
Sequence: CTTGAAAAATTTTTTACTG
Position: -106
Score: 3.2
Sequence: TTTTTTACTGATTTTCAAG
Position: -69
Score: 3.1
Sequence: CACAAAAATAATTTTCTTG
Locus tag: tll2347 (deprecated)
tll2347 (deprecated) -269 3 GCAGACAAACTTTAGCTTT
-173 3 CAAAAAAATGAAAATTAAT
-167 4.1 AATGAAAATTAATTTCTTA
-115 3 CTTGAAAAATTTTTTACTG
-106 3.2 TTTTTTACTGATTTTCAAG
-69 3.1 CACAAAAATAATTTTCTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlL
Ortholog function: Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A2347 -126 3.6 TTTTATAAAAACTCTAAGT
Synechocystis sp. PCC 6803 slr0749 -173 3.3 ATTTTATTTTTGTCTCAAT
Cyanothece sp. PCC 8801 PCC8801_0791 -242 2.7 ATTTAGTAAATTTTAAAGT
Microcystis aeruginosa NIES-843 MAE_16230 -150 2.8 ATTTATATAATTTTTAAGC
Thermosynechococcus elongatus BP-1 null -211 2.8 TTTTGTATTTTTGTTTAAT
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