Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcA regulog to Thermosynechococcus elongatus BP-1

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Thermosynechococcus elongatus BP-1
Orthologous TF(s) tll1650 (deprecated)
Regulated genes 22
Built upon 228 sites [see more]
Predicted regulatory interactions in Thermosynechococcus elongatus BP-1
Locus tag Position Score Sequence
Position: -30
Score: 3.6
Sequence: TGTTGCAAATGACACT
Locus tag: tll0048 (deprecated)
tll0048 (deprecated) -30 3.6 TGTTGCAAATGACACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fur
Ortholog function: Ferric uptake regulator, Fur family
Cyanothece sp. PCC 8801 PCC8801_0870 -380 3.4 TGTTTATGCTAAAACA
Microcystis aeruginosa NIES-843 MAE_37080 -118 3.7 AGTAATTTTTCATACT
Trichodesmium erythraeum IMS101 Tery_1958 -40 3.5 TGTATCATTGTCAATA
Position: -175
Score: 4.4
Sequence: TGTTAAATTAGATACA
Locus tag: tll0165 (deprecated)
tll0165 (deprecated) -175 4.4 TGTTAAATTAGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gifB
Ortholog function: Glutamine synthetase inactivating factor IF17
Cyanothece sp. PCC 7425 Cyan7425_1393 -158 4.7 GGTATCATATAATACA
Thermosynechococcus elongatus BP-1 null -175 4.4 TGTTAAATTAGATACA
Thermosynechococcus elongatus BP-1 null -146 4.4 TGTTAAATTAGATACA
Position: -111
Score: 4.2
Sequence: TGTAACCTATCTTACA
Locus tag: tlr0194
tlr0194 -111 4.2 TGTAACCTATCTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tlr0194
Ortholog function: hypothetical protein
Thermosynechococcus elongatus BP-1 tlr0194 -111 4.2 TGTAACCTATCTTACA
Position: -80
Score: 5.1
Sequence: TGTAGCTATTGCTACA
Locus tag: tll0591 (deprecated)
tll0591 (deprecated) -80 5.1 TGTAGCTATTGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnB
Ortholog function: nitrogen regulatory protein P-II
Synechocystis sp. PCC 6803 ssl0707 -184 3.7 GGTACTGATTTTTACA
Nostoc sp. PCC 7120 all2319 -214 3.8 AGTTACACAGACTACA
Synechococcus elongatus PCC 7942 Synpcc7942_0321 -103 4.8 TGTAGCAGTAACTACA
Synechococcus sp. JA-3-3Ab CYA_1508 -74 4.5 TGTATCCGTTTTTACA
Thermosynechococcus elongatus BP-1 tll0591 -80 5.1 TGTAGCTATTGCTACA
Position: -195
Score: 3.8
Sequence: AGTTTCTGGAAATACA
Locus tag: tlr1050 (deprecated)
tlr1050 (deprecated) -195 3.8 AGTTTCTGGAAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: isiA
Ortholog function: Iron-stress chlorophyll-binding protein
Nostoc sp. PCC 7120 all4001 -37 3.7 AGTATTTCTGGCAACA
Trichodesmium erythraeum IMS101 Tery_1667 -134 3.6 AGTAATTGATCATACT
Thermosynechococcus elongatus BP-1 null -195 3.8 AGTTTCTGGAAATACA
Position: -81
Score: 4
Sequence: TGTAGCCTAGCATACA
Locus tag: tlr1120
tlr1120 -81 4 TGTAGCCTAGCATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, substrate-binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0398 -127 4.1 TGTATCAAGTGTCACA
Synechocystis sp. PCC 6803 slr0447 -211 4.5 GGTATCCTATGCTACA
Cyanothece sp. PCC 7425 Cyan7425_2260 -148 3.7 TGTATAATAGATCACA
Microcystis aeruginosa NIES-843 MAE_06220 -170 4.7 AGTAGCAAAAATTACA
-140 4.6 AGTAGCGAAAGTTACA
Nostoc sp. PCC 7120 all1951 -116 4.3 AGTATCAAAAATAACA
Trichodesmium erythraeum IMS101 Tery_0130 -390 3.8 AGTTACAAAAAAAACA
Synechococcus sp. JA-3-3Ab CYA_1924 -272 3.7 GGTATCCCGCGATACA
Thermosynechococcus elongatus BP-1 tlr1120 -81 4 TGTAGCCTAGCATACA
Position: -138
Score: 4
Sequence: AGTATTATTCGTTACG
Locus tag: tlr1330
tlr1330 -138 4 AGTATTATTCGTTACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrrA
Ortholog function: Transcriptional regulator, OmpR family
Synechococcus sp. PCC 7002 SYNPCC7002_A0496 -75 4.1 CGTAACCACGGTTACA
Synechocystis sp. PCC 6803 sll1330 -75 4.6 GGTAACTGTTGTTACA
Cyanothece sp. ATCC 51142 cce_1808 -76 4.3 CGTAGCCGATGTTACA
Cyanothece sp. PCC 8801 PCC8801_3375 -76 4.5 CGTAGCAGATGTTACA
Cyanothece sp. PCC 7425 Cyan7425_0851 -82 4.1 AGTAGCTAGAGTTACG
Nostoc sp. PCC 7120 all4312 -75 4.5 AGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_0675 -89 4.7 AGTAGCTTCTGTTACA
Thermosynechococcus elongatus BP-1 tlr1330 -138 4 AGTATTATTCGTTACG
Position: -82
Score: 4.6
Sequence: AGTAGCAAAATTTACA
Locus tag: tlr1349 (deprecated)
tlr1349 (deprecated) -82 4.6 AGTAGCAAAATTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002 SYNPCC7002_A1827 -111 4 CGTAGTTAACACTACA
Synechocystis sp. PCC 6803 slr0898 -74 4.7 TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142 cce_1223 -76 4.7 TGTTACATTAGCTACA
Cyanothece sp. PCC 8801 PCC8801_2468 -75 4.6 TGTTACAATTAATACA
Cyanothece sp. PCC 7425 Cyan7425_4573 -123 4.5 TGTAACTTAATATACC
Microcystis aeruginosa NIES-843 MAE_18410 -190 4.1 TGTTACAGACAATACA
Trichodesmium erythraeum IMS101 Tery_1068 -276 3.8 TGTATTTTTATATAGT
-199 4.1 TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942 Synpcc7942_1240 -220 4.9 TGTAGCAATTGCTACT
-149 4.3 AGTATCAATGATTACT
-80 4.4 TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab CYA_0612 -72 3.9 TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421 gvip212 -146 4 TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1 tlr1349 -82 4.6 AGTAGCAAAATTTACA
Position: -122
Score: 3.9
Sequence: TGTATCAATCAACACA
Locus tag: tll1359 (deprecated)
tll1359 (deprecated) -122 3.9 TGTATCAATCAACACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: Nitrogen assimilation transcriptional activator, LysR family
Synechococcus sp. PCC 7002 SYNPCC7002_A1632 -87 3.9 TGTAACATccGgaACA
Cyanothece sp. ATCC 51142 cce_0198 -73 4.2 AGTATCAATTTCTACG
Cyanothece sp. PCC 8801 PCC8801_2329 -80 4.7 TGTATCAAATTCTACT
Cyanothece sp. PCC 7425 Cyan7425_1599 -78 4.6 TGTATCACTATCTACA
Microcystis aeruginosa NIES-843 MAE_09380 -80 4.1 gGTAgCAatTtcTACc
Nostoc sp. PCC 7120 all0602 -80 4.5 TGTAACAAAATCTACC
-21 4.7 TGTAATTAAGGCTACA
Trichodesmium erythraeum IMS101 Tery_4333 -27 4 TGTATAAAATAACACA
Synechococcus elongatus PCC 7942 Synpcc7942_1242 -153 4.3 AGTAATCATTGATACT
-82 4.9 AGTAGCAATTGCTACA
Synechococcus sp. JA-3-3Ab CYA_0984 -89 4.2 TGTAACGGTGTTTACA
Gloeobacter violaceus PCC 7421 gvip213 -46 4 CGTAACCCCAGATACA
Thermosynechococcus elongatus BP-1 null -122 3.9 TGTATCAATCAACACA
Position: -85
Score: 4.3
Sequence: TGTAGTTGAGTTTACA
Locus tag: tlr1468
tlr1468 -85 4.3 TGTAGTTGAGTTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2395
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A2395 -200 4.5 TGTTACTTAAATTACA
-92 4.5 TGTAGTAGACGTTACA
Cyanothece sp. ATCC 51142 cce_2729 -148 4 TGTAACATATGATAAC
-87 4.6 TGTAATATTGATTACA
Cyanothece sp. PCC 8801 PCC8801_2066 -53 4.8 TGTAATATTAATTACA
Cyanothece sp. PCC 7425 Cyan7425_0833 -38 3.7 AGTAGTTTAATAAACT
Microcystis aeruginosa NIES-843 MAE_38700 -87 4.2 TGTAATCATCTTTACA
Nostoc sp. PCC 7120 alr4308 -64 3.9 GGTAGTCGGAGTTACA
Trichodesmium erythraeum IMS101 Tery_0672 -94 4.3 AGTATTCAAAATTACA
Synechococcus sp. JA-3-3Ab CYA_0570 -139 3.9 GGTAAGATAAAATACA
-81 4.2 CGTATCAAAGGCTACT
Thermosynechococcus elongatus BP-1 tlr1468 -85 4.3 TGTAGTTGAGTTTACA
Position: -146
Score: 4.4
Sequence: TGTTAAATTAGATACA
Locus tag: tll1670 (deprecated)
tll1670 (deprecated) -146 4.4 TGTTAAATTAGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gifB
Ortholog function: Glutamine synthetase inactivating factor IF17
Cyanothece sp. PCC 7425 Cyan7425_1393 -158 4.7 GGTATCATATAATACA
Thermosynechococcus elongatus BP-1 null -175 4.4 TGTTAAATTAGATACA
Thermosynechococcus elongatus BP-1 null -146 4.4 TGTTAAATTAGATACA
Position: -190
Score: 4.4
Sequence: TGTATAACGTGATACA
Locus tag: tll1985 (deprecated)
tll1985 (deprecated) -190 4.4 TGTATAACGTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002 SYNPCC7002_A2208 -52 3.7 GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803 sll0108 -189 4 AGTAGTAAATCATACA
-18 4.4 TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142 cce_3261 -152 3.5 TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801 PCC8801_1229 -264 5 TGTATTTTTTGATACA
-229 4.1 AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843 MAE_40010 -213 4.6 TGTATCAACGAATACA
Trichodesmium erythraeum IMS101 Tery_4477 -83 4.9 AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_0442 -151 4.1 TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313 PMT1853 -160 3.8 TGTAACAAAATGAACT
Synechococcus sp. WH 8102 SYNW0253 -100 4.2 TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1 amt1 -190 4.4 TGTATAACGTGATACA
Position: -130
Score: 4
Sequence: AGTAGCAATGACAACA
Locus tag: tlr2286 (deprecated)
tlr2286 (deprecated) -130 4 AGTAGCAATGACAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: trxQ
Ortholog function: Thioredoxin
Thermosynechococcus elongatus BP-1 tlr2286 -130 4 AGTAGCAATGACAACA
Position: -63
Score: 4.1
Sequence: AGTATTGGATATTACA
Locus tag: tsr2448 (deprecated)
tsr2448 (deprecated) -63 4.1 AGTATTGGATATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0076
Ortholog function: hypothetical protein
Cyanothece sp. PCC 7425 Cyan7425_0729 -128 4.3 TGTAACATTTGTTATT
-71 4.1 AGTATTGGTGGATACA
Nostoc sp. PCC 7120 asr0064 -107 3.7 CGTATAGCAAAATACA
Trichodesmium erythraeum IMS101 Tery_2891 -191 4.1 TGTAATTTAGACAACA
-110 4.6 TGTAACTATATATACT
Thermosynechococcus elongatus BP-1 tsr2448 -63 4.1 AGTATTGGATATTACA
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