Propagation of NtcA regulog to Thermosynechococcus elongatus BP-1
| Source regulog: | NtcA - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Nitrogen assimilation |
| Effector: | 2-oxoglutarate |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Thermosynechococcus elongatus BP-1 |
| Orthologous TF(s) | tll1650 (deprecated) |
| Regulated genes | 22 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -30
Score: 3.6 Sequence: TGTTGCAAATGACACT
Locus tag: tll0048 (deprecated)
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| tll0048 (deprecated) | -30 | 3.6 | TGTTGCAAATGACACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fur | ||||
| Ortholog function: Ferric uptake regulator, Fur family | ||||
| Cyanothece sp. PCC 8801 | PCC8801_0870 | -380 | 3.4 | TGTTTATGCTAAAACA |
| Microcystis aeruginosa NIES-843 | MAE_37080 | -118 | 3.7 | AGTAATTTTTCATACT |
| Trichodesmium erythraeum IMS101 | Tery_1958 | -40 | 3.5 | TGTATCATTGTCAATA |
|
Position: -175
Score: 4.4 Sequence: TGTTAAATTAGATACA
Locus tag: tll0165 (deprecated)
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| tll0165 (deprecated) | -175 | 4.4 | TGTTAAATTAGATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gifB | ||||
| Ortholog function: Glutamine synthetase inactivating factor IF17 | ||||
| Cyanothece sp. PCC 7425 | Cyan7425_1393 | -158 | 4.7 | GGTATCATATAATACA |
| Thermosynechococcus elongatus BP-1 | null | -175 | 4.4 | TGTTAAATTAGATACA |
| Thermosynechococcus elongatus BP-1 | null | -146 | 4.4 | TGTTAAATTAGATACA |
|
Position: -111
Score: 4.2 Sequence: TGTAACCTATCTTACA
Locus tag: tlr0194
|
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| tlr0194 | -111 | 4.2 | TGTAACCTATCTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tlr0194 | ||||
| Ortholog function: hypothetical protein | ||||
| Thermosynechococcus elongatus BP-1 | tlr0194 | -111 | 4.2 | TGTAACCTATCTTACA |
|
Position: -80
Score: 5.1 Sequence: TGTAGCTATTGCTACA
Locus tag: tll0591 (deprecated)
|
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| tll0591 (deprecated) | -80 | 5.1 | TGTAGCTATTGCTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnB | ||||
| Ortholog function: nitrogen regulatory protein P-II | ||||
| Synechocystis sp. PCC 6803 | ssl0707 | -184 | 3.7 | GGTACTGATTTTTACA |
| Nostoc sp. PCC 7120 | all2319 | -214 | 3.8 | AGTTACACAGACTACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_0321 | -103 | 4.8 | TGTAGCAGTAACTACA |
| Synechococcus sp. JA-3-3Ab | CYA_1508 | -74 | 4.5 | TGTATCCGTTTTTACA |
| Thermosynechococcus elongatus BP-1 | tll0591 | -80 | 5.1 | TGTAGCTATTGCTACA |
|
Position: -195
Score: 3.8 Sequence: AGTTTCTGGAAATACA
Locus tag: tlr1050 (deprecated)
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| tlr1050 (deprecated) | -195 | 3.8 | AGTTTCTGGAAATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: isiA | ||||
| Ortholog function: Iron-stress chlorophyll-binding protein | ||||
| Nostoc sp. PCC 7120 | all4001 | -37 | 3.7 | AGTATTTCTGGCAACA |
| Trichodesmium erythraeum IMS101 | Tery_1667 | -134 | 3.6 | AGTAATTGATCATACT |
| Thermosynechococcus elongatus BP-1 | null | -195 | 3.8 | AGTTTCTGGAAATACA |
|
Position: -81
Score: 4 Sequence: TGTAGCCTAGCATACA
Locus tag: tlr1120
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| tlr1120 | -81 | 4 | TGTAGCCTAGCATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: urtA | ||||
| Ortholog function: Urea ABC transporter, substrate-binding protein | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0398 | -127 | 4.1 | TGTATCAAGTGTCACA |
| Synechocystis sp. PCC 6803 | slr0447 | -211 | 4.5 | GGTATCCTATGCTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_2260 | -148 | 3.7 | TGTATAATAGATCACA |
| Microcystis aeruginosa NIES-843 | MAE_06220 | -170 | 4.7 | AGTAGCAAAAATTACA |
| -140 | 4.6 | AGTAGCGAAAGTTACA | ||
| Nostoc sp. PCC 7120 | all1951 | -116 | 4.3 | AGTATCAAAAATAACA |
| Trichodesmium erythraeum IMS101 | Tery_0130 | -390 | 3.8 | AGTTACAAAAAAAACA |
| Synechococcus sp. JA-3-3Ab | CYA_1924 | -272 | 3.7 | GGTATCCCGCGATACA |
| Thermosynechococcus elongatus BP-1 | tlr1120 | -81 | 4 | TGTAGCCTAGCATACA |
|
Position: -138
Score: 4 Sequence: AGTATTATTCGTTACG
Locus tag: tlr1330
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| tlr1330 | -138 | 4 | AGTATTATTCGTTACG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrrA | ||||
| Ortholog function: Transcriptional regulator, OmpR family | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0496 | -75 | 4.1 | CGTAACCACGGTTACA |
| Synechocystis sp. PCC 6803 | sll1330 | -75 | 4.6 | GGTAACTGTTGTTACA |
| Cyanothece sp. ATCC 51142 | cce_1808 | -76 | 4.3 | CGTAGCCGATGTTACA |
| Cyanothece sp. PCC 8801 | PCC8801_3375 | -76 | 4.5 | CGTAGCAGATGTTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_0851 | -82 | 4.1 | AGTAGCTAGAGTTACG |
| Nostoc sp. PCC 7120 | all4312 | -75 | 4.5 | AGTAACAAAGACTACA |
| Trichodesmium erythraeum IMS101 | Tery_0675 | -89 | 4.7 | AGTAGCTTCTGTTACA |
| Thermosynechococcus elongatus BP-1 | tlr1330 | -138 | 4 | AGTATTATTCGTTACG |
|
Position: -82
Score: 4.6 Sequence: AGTAGCAAAATTTACA
Locus tag: tlr1349 (deprecated)
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| tlr1349 (deprecated) | -82 | 4.6 | AGTAGCAAAATTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirA | ||||
| Ortholog function: Nitrite reductase, ferredoxin dependent | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1827 | -111 | 4 | CGTAGTTAACACTACA |
| Synechocystis sp. PCC 6803 | slr0898 | -74 | 4.7 | TGTAATTTACGTTACA |
| Cyanothece sp. ATCC 51142 | cce_1223 | -76 | 4.7 | TGTTACATTAGCTACA |
| Cyanothece sp. PCC 8801 | PCC8801_2468 | -75 | 4.6 | TGTTACAATTAATACA |
| Cyanothece sp. PCC 7425 | Cyan7425_4573 | -123 | 4.5 | TGTAACTTAATATACC |
| Microcystis aeruginosa NIES-843 | MAE_18410 | -190 | 4.1 | TGTTACAGACAATACA |
| Trichodesmium erythraeum IMS101 | Tery_1068 | -276 | 3.8 | TGTATTTTTATATAGT |
| -199 | 4.1 | TGTTATATAAGCTACG | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_1240 | -220 | 4.9 | TGTAGCAATTGCTACT |
| -149 | 4.3 | AGTATCAATGATTACT | ||
| -80 | 4.4 | TGTAGTTTCTGTTACC | ||
| Synechococcus sp. JA-3-3Ab | CYA_0612 | -72 | 3.9 | TGTAACTGCCAATACC |
| Gloeobacter violaceus PCC 7421 | gvip212 | -146 | 4 | TGTATCTGGGGTTACG |
| Thermosynechococcus elongatus BP-1 | tlr1349 | -82 | 4.6 | AGTAGCAAAATTTACA |
|
Position: -122
Score: 3.9 Sequence: TGTATCAATCAACACA
Locus tag: tll1359 (deprecated)
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| tll1359 (deprecated) | -122 | 3.9 | TGTATCAATCAACACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ntcB | ||||
| Ortholog function: Nitrogen assimilation transcriptional activator, LysR family | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1632 | -87 | 3.9 | TGTAACATccGgaACA |
| Cyanothece sp. ATCC 51142 | cce_0198 | -73 | 4.2 | AGTATCAATTTCTACG |
| Cyanothece sp. PCC 8801 | PCC8801_2329 | -80 | 4.7 | TGTATCAAATTCTACT |
| Cyanothece sp. PCC 7425 | Cyan7425_1599 | -78 | 4.6 | TGTATCACTATCTACA |
| Microcystis aeruginosa NIES-843 | MAE_09380 | -80 | 4.1 | gGTAgCAatTtcTACc |
| Nostoc sp. PCC 7120 | all0602 | -80 | 4.5 | TGTAACAAAATCTACC |
| -21 | 4.7 | TGTAATTAAGGCTACA | ||
| Trichodesmium erythraeum IMS101 | Tery_4333 | -27 | 4 | TGTATAAAATAACACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1242 | -153 | 4.3 | AGTAATCATTGATACT |
| -82 | 4.9 | AGTAGCAATTGCTACA | ||
| Synechococcus sp. JA-3-3Ab | CYA_0984 | -89 | 4.2 | TGTAACGGTGTTTACA |
| Gloeobacter violaceus PCC 7421 | gvip213 | -46 | 4 | CGTAACCCCAGATACA |
| Thermosynechococcus elongatus BP-1 | null | -122 | 3.9 | TGTATCAATCAACACA |
|
Position: -85
Score: 4.3 Sequence: TGTAGTTGAGTTTACA
Locus tag: tlr1468
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| tlr1468 | -85 | 4.3 | TGTAGTTGAGTTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SYNPCC7002_A2395 | ||||
| Ortholog function: hypothetical protein | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2395 | -200 | 4.5 | TGTTACTTAAATTACA |
| -92 | 4.5 | TGTAGTAGACGTTACA | ||
| Cyanothece sp. ATCC 51142 | cce_2729 | -148 | 4 | TGTAACATATGATAAC |
| -87 | 4.6 | TGTAATATTGATTACA | ||
| Cyanothece sp. PCC 8801 | PCC8801_2066 | -53 | 4.8 | TGTAATATTAATTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_0833 | -38 | 3.7 | AGTAGTTTAATAAACT |
| Microcystis aeruginosa NIES-843 | MAE_38700 | -87 | 4.2 | TGTAATCATCTTTACA |
| Nostoc sp. PCC 7120 | alr4308 | -64 | 3.9 | GGTAGTCGGAGTTACA |
| Trichodesmium erythraeum IMS101 | Tery_0672 | -94 | 4.3 | AGTATTCAAAATTACA |
| Synechococcus sp. JA-3-3Ab | CYA_0570 | -139 | 3.9 | GGTAAGATAAAATACA |
| -81 | 4.2 | CGTATCAAAGGCTACT | ||
| Thermosynechococcus elongatus BP-1 | tlr1468 | -85 | 4.3 | TGTAGTTGAGTTTACA |
|
Position: -146
Score: 4.4 Sequence: TGTTAAATTAGATACA
Locus tag: tll1670 (deprecated)
|
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| tll1670 (deprecated) | -146 | 4.4 | TGTTAAATTAGATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gifB | ||||
| Ortholog function: Glutamine synthetase inactivating factor IF17 | ||||
| Cyanothece sp. PCC 7425 | Cyan7425_1393 | -158 | 4.7 | GGTATCATATAATACA |
| Thermosynechococcus elongatus BP-1 | null | -175 | 4.4 | TGTTAAATTAGATACA |
| Thermosynechococcus elongatus BP-1 | null | -146 | 4.4 | TGTTAAATTAGATACA |
|
Position: -190
Score: 4.4 Sequence: TGTATAACGTGATACA
Locus tag: tll1985 (deprecated)
|
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| tll1985 (deprecated) | -190 | 4.4 | TGTATAACGTGATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amt1 | ||||
| Ortholog function: ammonium transporter | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2208 | -52 | 3.7 | GGTTACTTCTGCTACC |
| Synechocystis sp. PCC 6803 | sll0108 | -189 | 4 | AGTAGTAAATCATACA |
| -18 | 4.4 | TGTAGATTAAAGTACA | ||
| Cyanothece sp. ATCC 51142 | cce_3261 | -152 | 3.5 | TGTtAaggtTGTaACA |
| Cyanothece sp. PCC 8801 | PCC8801_1229 | -264 | 5 | TGTATTTTTTGATACA |
| -229 | 4.1 | AGTAATAAAAAAAACA | ||
| Microcystis aeruginosa NIES-843 | MAE_40010 | -213 | 4.6 | TGTATCAACGAATACA |
| Trichodesmium erythraeum IMS101 | Tery_4477 | -83 | 4.9 | AGTAGCATTTGATACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_0442 | -151 | 4.1 | TGTTACATCGATTACA |
| Prochlorococcus marinus str. MIT 9313 | PMT1853 | -160 | 3.8 | TGTAACAAAATGAACT |
| Synechococcus sp. WH 8102 | SYNW0253 | -100 | 4.2 | TGTATCAATTAACACA |
| Thermosynechococcus elongatus BP-1 | amt1 | -190 | 4.4 | TGTATAACGTGATACA |
|
Position: -130
Score: 4 Sequence: AGTAGCAATGACAACA
Locus tag: tlr2286 (deprecated)
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| tlr2286 (deprecated) | -130 | 4 | AGTAGCAATGACAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: trxQ | ||||
| Ortholog function: Thioredoxin | ||||
| Thermosynechococcus elongatus BP-1 | tlr2286 | -130 | 4 | AGTAGCAATGACAACA |
|
Position: -63
Score: 4.1 Sequence: AGTATTGGATATTACA
Locus tag: tsr2448 (deprecated)
|
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| tsr2448 (deprecated) | -63 | 4.1 | AGTATTGGATATTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SYNPCC7002_A0076 | ||||
| Ortholog function: hypothetical protein | ||||
| Cyanothece sp. PCC 7425 | Cyan7425_0729 | -128 | 4.3 | TGTAACATTTGTTATT |
| -71 | 4.1 | AGTATTGGTGGATACA | ||
| Nostoc sp. PCC 7120 | asr0064 | -107 | 3.7 | CGTATAGCAAAATACA |
| Trichodesmium erythraeum IMS101 | Tery_2891 | -191 | 4.1 | TGTAATTTAGACAACA |
| -110 | 4.6 | TGTAACTATATATACT | ||
| Thermosynechococcus elongatus BP-1 | tsr2448 | -63 | 4.1 | AGTATTGGATATTACA |