Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Crp regulog to Synechococcus sp. PCC 7002

Reference regulog properties
Source regulog: Crp - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process:
Effector: Cyclic 3',5'-AMP
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus sp. PCC 7002
Orthologous TF(s) SYNPCC7002_A1789
Regulated genes 11
Built upon 106 sites [see more]
Predicted regulatory interactions in Synechococcus sp. PCC 7002
Locus tag Position Score Sequence
Position: -65
Score: 3.7
Sequence: TATGATTGGGGTCATC
Locus tag: SYNPCC7002_A0106
SYNPCC7002_A0106 -65 3.7 TATGATTGGGGTCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gap2
Ortholog function: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59)
Synechococcus sp. PCC 7002 SYNPCC7002_A0106 -65 3.7 TATGATTGGGGTCATC
Cyanothece sp. PCC 8801 PCC8801_2557 -31 4 ATTGAGCTAAAGCATA
Nostoc sp. PCC 7120 all5062 -56 3.8 TATGATTGGGGTCAAA
-1 4.1 TGTGATTAGAGTCGCA
Trichodesmium erythraeum IMS101 Tery_4030 -410 3.6 TATGATAATTCTCAAG
Position: -141
Score: 4.5
Sequence: CGTGATCAGAGTCACG
Locus tag: SYNPCC7002_A1600
SYNPCC7002_A1600 -141 4.5 CGTGATCAGAGTCACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1600
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A1600 -141 4.5 CGTGATCAGAGTCACG
Synechocystis sp. PCC 6803 slr0442 -203 4.9 TGTGATCCAGATCACA
Synechocystis sp. PCC 6803 sll1268 -162 5.3 TGTGATCTAGATCACA
Microcystis aeruginosa NIES-843 MAE_53490 -130 4.8 TGTGATTTTACTCACA
Position: -223
Score: 4.3
Sequence: TTTGATAAAAATCAAT
Locus tag: SYNPCC7002_A1924
SYNPCC7002_A1924 -223 4.3 TTTGATAAAAATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sigF
Ortholog function: RNA polymerase sigma-37
Synechococcus sp. PCC 7002 SYNPCC7002_A1924 -223 4.3 TTTGATAAAAATCAAT
Cyanothece sp. PCC 8801 PCC8801_4329 -271 3.7 AGTGACCTAAATTCCG
Cyanothece sp. PCC 7425 Cyan7425_3949 -91 4.4 TGTGTTCTAGATCACT
Trichodesmium erythraeum IMS101 Tery_3916 -118 4.1 TGTGTTTGATATCACA
Thermosynechococcus elongatus BP-1 null -174 4.7 TGTGGTCAAGATCACA
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