Propagation of NtcA regulog to Synechococcus sp. PCC 7002

Reference regulog properties
Source regulog:	NtcA - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Synechococcus sp. PCC 7002
Orthologous TF(s)	SYNPCC7002_A1675
Regulated genes	23

Built upon 228 sites [see more]

Predicted regulatory interactions in *Synechococcus sp. PCC 7002*
	Locus tag	Position	Score	Sequence
Position: -97 Score: 4.2 Sequence: AGTATTGAAATATACA Locus tag: SYNPCC7002_A0076
	SYNPCC7002_A0076	-97	4.2	AGTATTGAAATATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0076
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002	SYNPCC7002_A0076	-97	4.2	AGTATTGAAATATACA
Synechocystis sp. PCC 6803	ssr1562	-78	4.5	TGTAATCGATAATACA
Cyanothece sp. ATCC 51142	cce_0537	-137	4	TGTAAACTATGATATA
		-93	4.8	TGTAGTCTTTGTTACA
Cyanothece sp. PCC 8801	PCC8801_3101	-95	4.6	TGTATTGGTTGTTACA
Microcystis aeruginosa NIES-843	MAE_39690	-99	4.3	TGTAATCGTCGATACA

Position: -29 Score: 5 Sequence: TGTATCAAATACTACA Locus tag: SYNPCC7002_A0264
	SYNPCC7002_A0264	-29	5	TGTATCAAATACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0264
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002	SYNPCC7002_A0264	-29	5	TGTATCAAATACTACA
Microcystis aeruginosa NIES-843	MAE_18580	-68	4.8	TGTATCTTTAGCTACT
Nostoc sp. PCC 7120	all1327	-52	4.3	CGTAGTGTATGTTACA

Position: -127 Score: 4.1 Sequence: TGTATCAAGTGTCACA Locus tag: SYNPCC7002_A0398
	SYNPCC7002_A0398	-127	4.1	TGTATCAAGTGTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, substrate-binding protein
Synechococcus sp. PCC 7002	SYNPCC7002_A0398	-127	4.1	TGTATCAAGTGTCACA
Synechocystis sp. PCC 6803	slr0447	-211	4.5	GGTATCCTATGCTACA
Cyanothece sp. PCC 7425	Cyan7425_2260	-148	3.7	TGTATAATAGATCACA
Microcystis aeruginosa NIES-843	MAE_06220	-170	4.7	AGTAGCAAAAATTACA
		-140	4.6	AGTAGCGAAAGTTACA
Nostoc sp. PCC 7120	all1951	-116	4.3	AGTATCAAAAATAACA
Trichodesmium erythraeum IMS101	Tery_0130	-390	3.8	AGTTACAAAAAAAACA
Synechococcus sp. JA-3-3Ab	CYA_1924	-272	3.7	GGTATCCCGCGATACA
Thermosynechococcus elongatus BP-1	tlr1120	-81	4	TGTAGCCTAGCATACA

Position: -75 Score: 4.1 Sequence: CGTAACCACGGTTACA Locus tag: SYNPCC7002_A0496
	SYNPCC7002_A0496	-75	4.1	CGTAACCACGGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrrA
Ortholog function: Transcriptional regulator, OmpR family
Synechococcus sp. PCC 7002	SYNPCC7002_A0496	-75	4.1	CGTAACCACGGTTACA
Synechocystis sp. PCC 6803	sll1330	-75	4.6	GGTAACTGTTGTTACA
Cyanothece sp. ATCC 51142	cce_1808	-76	4.3	CGTAGCCGATGTTACA
Cyanothece sp. PCC 8801	PCC8801_3375	-76	4.5	CGTAGCAGATGTTACA
Cyanothece sp. PCC 7425	Cyan7425_0851	-82	4.1	AGTAGCTAGAGTTACG
Nostoc sp. PCC 7120	all4312	-75	4.5	AGTAACAAAGACTACA
Trichodesmium erythraeum IMS101	Tery_0675	-89	4.7	AGTAGCTTCTGTTACA
Thermosynechococcus elongatus BP-1	tlr1330	-138	4	AGTATTATTCGTTACG

Position: -237 Score: 4.5 Sequence: CGTATCTTTAATTACA Locus tag: SYNPCC7002_A0643
	SYNPCC7002_A0643	-237	4.5	CGTATCTTTAATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cynS
Ortholog function: cyanate hydratase
Synechococcus sp. PCC 7002	SYNPCC7002_A0643	-237	4.5	CGTATCTTTAATTACA
Synechococcus sp. PCC 7002	SYNPCC7002_A0863	-221	4.1	TGTAATTGATTTAACA
Synechococcus elongatus PCC 7942	Synpcc7942_2104	-67	4.4	TGTAACGACGGCTACA

Position: -221 Score: 4.1 Sequence: TGTAATTGATTTAACA Locus tag: SYNPCC7002_A0860
	SYNPCC7002_A0860	-221	4.1	TGTAATTGATTTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cynA
Ortholog function: cyanate ABC transporter, substrate binding protein
Synechococcus sp. PCC 7002	SYNPCC7002_A0860	-221	4.1	TGTAATTGATTTAACA
Synechococcus elongatus PCC 7942	Synpcc7942_2107	-67	4.4	TGTAACGACGGCTACA
Synechococcus sp. WH 8102	SYNW2487	-103	4.1	TGTAGCAAGTGAGACA
		-66	4.5	AGTATCACCTGATACA

Position: -272 Score: 4.1 Sequence: TTTATCATTTTCTACA Locus tag: SYNPCC7002_A1443
	SYNPCC7002_A1443	-272	4.1	TTTATCATTTTCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifJ
Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Synechococcus sp. PCC 7002	SYNPCC7002_A1443	-272	4.1	TTTATCATTTTCTACA
Synechocystis sp. PCC 6803	sll0741	-181	3.3	AGAATCAACAAAAACA
Cyanothece sp. ATCC 51142	cce_0953	-52	3.8	TGCAACAAAAATTACC
Cyanothece sp. PCC 8801	PCC8801_3918	-265	3.5	AGTAACCATAATTATT
Cyanothece sp. PCC 7425	Cyan7425_4369	-120	3.1	TCTAACGTATTCTCCA
Nostoc sp. PCC 7120	alr1911	-281	3.2	TGAATTTGATGTAACC

Position: -126 Score: 3.5 Sequence: TGTGACCCAGACTACA Locus tag: SYNPCC7002_A1630
	SYNPCC7002_A1630	-126	3.5	TGTGACCCAGACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002	SYNPCC7002_A1630	-125	3.5	TGTgACccAgacTACA
Synechocystis sp. PCC 6803	slr1756	-98	4.3	GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142	cce_4432	-89	4.5	AGTATCCAATTATACA
		-30	4	TGTATATATTGAAACC
Cyanothece sp. PCC 8801	PCC8801_0808	-92	4	CGTATCATGGTATACA
Cyanothece sp. PCC 7425	Cyan7425_1839	-221	4.9	TGTAACTCATGATACA
Microcystis aeruginosa NIES-843	MAE_19270	-92	4.7	TGTATCgaAaaATACA
Nostoc sp. PCC 7120	alr2328	-142	4.8	TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101	Tery_3834	-250	4	CGTAACACCCGATACA
Synechococcus elongatus PCC 7942	Synpcc7942_2156	-194	4.8	TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313	PMT0601	-79	4.2	GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_1363	-138	4.3	CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421	gvip146	-116	4	CGTATCTCAGACTACA

Position: -317 Score: 3.7 Sequence: AGTATAAAAAATTAAA Position: -177 Score: 3.9 Sequence: TGAAGCAAAAAGTACA Locus tag: SYNPCC7002_A1675
	SYNPCC7002_A1675	-317	3.7	AGTATAAAAAATTAAA
		-177	3.9	TGAAGCAAAAAGTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcA
Ortholog function: Global nitrogen transcription regulator, Crp family
Synechococcus sp. PCC 7002	SYNPCC7002_A1675	-177	3.9	TGAAGCAAAAAGTACA
Cyanothece sp. PCC 7425	Cyan7425_0755	-173	4.8	TGTATCCGATGATACA
Nostoc sp. PCC 7120	alr4392	-151	3.7	GGTATCATTATGAACA
		-111	3.7	AGTATAGGAAAGTACA
Synechococcus elongatus PCC 7942	Synpcc7942_0127	-157	4.7	AGTAGCAGTTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_1799	-181	4.7	TGTAGCTCCTGCTACA
Gloeobacter violaceus PCC 7421	gvip454	-77	3.9	AGTAGTCCCTAATACA

Position: -111 Score: 4 Sequence: CGTAGTTAACACTACA Locus tag: SYNPCC7002_A1827
	SYNPCC7002_A1827	-111	4	CGTAGTTAACACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002	SYNPCC7002_A1827	-111	4	CGTAGTTAACACTACA
Synechocystis sp. PCC 6803	slr0898	-74	4.7	TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142	cce_1223	-76	4.7	TGTTACATTAGCTACA
Cyanothece sp. PCC 8801	PCC8801_2468	-75	4.6	TGTTACAATTAATACA
Cyanothece sp. PCC 7425	Cyan7425_4573	-123	4.5	TGTAACTTAATATACC
Microcystis aeruginosa NIES-843	MAE_18410	-190	4.1	TGTTACAGACAATACA
Trichodesmium erythraeum IMS101	Tery_1068	-276	3.8	TGTATTTTTATATAGT
		-199	4.1	TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942	Synpcc7942_1240	-220	4.9	TGTAGCAATTGCTACT
		-149	4.3	AGTATCAATGATTACT
		-80	4.4	TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab	CYA_0612	-72	3.9	TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421	gvip212	-146	4	TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1	tlr1349	-82	4.6	AGTAGCAAAATTTACA

Position: -243 Score: 4.7 Sequence: TGTAACAGGAGTTACA Locus tag: SYNPCC7002_A1954
	SYNPCC7002_A1954	-243	4.7	TGTAACAGGAGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1954
Ortholog function: putative two-component sensor histidine kinase
Synechococcus sp. PCC 7002	SYNPCC7002_A1954	-243	4.7	TGTAACAGGAGTTACA
Synechocystis sp. PCC 6803	slr1147	-214	4.7	TGTAATGATAGTTACA
Cyanothece sp. ATCC 51142	cce_3327	-210	4.7	TGTAGTCATAGTTACA
		-46	4	TTTATTTTCTGTTACA
Synechococcus sp. WH 8102	SYNW0246	-143	4.1	TGTAACTTTGGTTGCA
Thermosynechococcus elongatus BP-1	tlr0195	-111	4.2	TGTAACCTATCTTACA

Position: -318 Score: 4.5 Sequence: CGTATCATTTTATACA Position: -52 Score: 3.7 Sequence: GGTTACTTCTGCTACC Locus tag: SYNPCC7002_A2208
	SYNPCC7002_A2208	-318	4.5	CGTATCATTTTATACA
		-52	3.7	GGTTACTTCTGCTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002	SYNPCC7002_A2208	-52	3.7	GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803	sll0108	-189	4	AGTAGTAAATCATACA
		-18	4.4	TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142	cce_3261	-152	3.5	TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801	PCC8801_1229	-264	5	TGTATTTTTTGATACA
		-229	4.1	AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843	MAE_40010	-213	4.6	TGTATCAACGAATACA
Trichodesmium erythraeum IMS101	Tery_4477	-83	4.9	AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942	Synpcc7942_0442	-151	4.1	TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313	PMT1853	-160	3.8	TGTAACAAAATGAACT
Synechococcus sp. WH 8102	SYNW0253	-100	4.2	TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1	amt1	-190	4.4	TGTATAACGTGATACA

Position: -284 Score: 3.9 Sequence: TGTAGCTTAAAGAACT Position: -200 Score: 4.5 Sequence: TGTTACTTAAATTACA Position: -92 Score: 4.5 Sequence: TGTAGTAGACGTTACA Locus tag: SYNPCC7002_A2395
	SYNPCC7002_A2395	-284	3.9	TGTAGCTTAAAGAACT
		-200	4.5	TGTTACTTAAATTACA
		-92	4.5	TGTAGTAGACGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2395
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002	SYNPCC7002_A2395	-200	4.5	TGTTACTTAAATTACA
		-92	4.5	TGTAGTAGACGTTACA
Cyanothece sp. ATCC 51142	cce_2729	-148	4	TGTAACATATGATAAC
		-87	4.6	TGTAATATTGATTACA
Cyanothece sp. PCC 8801	PCC8801_2066	-53	4.8	TGTAATATTAATTACA
Cyanothece sp. PCC 7425	Cyan7425_0833	-38	3.7	AGTAGTTTAATAAACT
Microcystis aeruginosa NIES-843	MAE_38700	-87	4.2	TGTAATCATCTTTACA
Nostoc sp. PCC 7120	alr4308	-64	3.9	GGTAGTCGGAGTTACA
Trichodesmium erythraeum IMS101	Tery_0672	-94	4.3	AGTATTCAAAATTACA
Synechococcus sp. JA-3-3Ab	CYA_0570	-139	3.9	GGTAAGATAAAATACA
		-81	4.2	CGTATCAAAGGCTACT
Thermosynechococcus elongatus BP-1	tlr1468	-85	4.3	TGTAGTTGAGTTTACA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NtcA regulog to Synechococcus sp. PCC 7002

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --