Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtcB regulog to Synechococcus sp. PCC 7002

Reference regulog properties
Source regulog: NtcB - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Nitrite
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus sp. PCC 7002
Orthologous TF(s) SYNPCC7002_A1632
Regulated genes 2
Built upon 44 sites [see more]
Predicted regulatory interactions in Synechococcus sp. PCC 7002
Locus tag Position Score Sequence
Position: -51
Score: 4.8
Sequence: ATGCAGCAATTGCAT
Locus tag: SYNPCC7002_A1732
SYNPCC7002_A1732 -51 4.8 ATGCAGCAATTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yrdC
Ortholog function: putative YrdC-like RNA-binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A1732 -51 4.8 ATGCAGCAATTGCAT
Cyanothece sp. ATCC 51142 cce_1062 -69 4.4 ATGCGTTTTTTGTAT
Position: -162
Score: 4
Sequence: ATGCGGCGATCGCAT
Locus tag: SYNPCC7002_A1827
SYNPCC7002_A1827 -162 4 ATGCGGCGATCGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: ferredoxin--nitrite reductase
Synechococcus sp. PCC 7002 SYNPCC7002_A1827 -162 4 ATGCGGCGATCGCAT
Synechocystis sp. PCC 6803 slr0898 -103 4.8 ATGCGTAAACTGCAT
Cyanothece sp. ATCC 51142 cce_1223 -127 4.7 ATGCAAAAAATCCAT
-105 4.1 ATGCAAAAAACGGAT
Cyanothece sp. PCC 8801 PCC8801_2468 -126 3.9 ATGCAAAATAATCAT
Cyanothece sp. PCC 7425 Cyan7425_4573 -174 4.5 ATGCAGGTTTGGCAT
Microcystis aeruginosa NIES-843 MAE_18410 -241 4.6 ATGCACTTACTGCAT
Nostoc sp. PCC 7120 alr0607 -562 4.8 ATGCAGAAAACGCAT
Trichodesmium erythraeum IMS101 Tery_1068 -250 4.7 ATGTAATAAATGCAT
Synechococcus elongatus PCC 7942 Synpcc7942_1240 -109 4.3 TTGCAGAACATGCAT
Synechococcus sp. JA-3-3Ab CYA_0612 -101 4.4 ATGACAAAACTGCAT
Thermosynechococcus elongatus BP-1 tlr1349 -111 4.4 ATACAAAAACTGTAT
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