Propagation of NtcA regulog to Prochlorococcus marinus sp. MED4

Reference regulog properties
Source regulog:	NtcA - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Prochlorococcus marinus sp. MED4
Orthologous TF(s)	PMM0246
Regulated genes	12

Built upon 228 sites [see more]

Predicted regulatory interactions in *Prochlorococcus marinus sp. MED4*
	Locus tag	Position	Score	Sequence
Position: -63 Score: 4.5 Sequence: TGTTACTGTTGATACA Locus tag: PMM0246
	PMM0246	-63	4.5	TGTTACTGTTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcA
Ortholog function: Global nitrogen transcription regulator, Crp family
Synechococcus sp. PCC 7002	SYNPCC7002_A1675	-177	3.9	TGAAGCAAAAAGTACA
Cyanothece sp. PCC 7425	Cyan7425_0755	-173	4.8	TGTATCCGATGATACA
Nostoc sp. PCC 7120	alr4392	-151	3.7	GGTATCATTATGAACA
		-111	3.7	AGTATAGGAAAGTACA
Synechococcus elongatus PCC 7942	Synpcc7942_0127	-157	4.7	AGTAGCAGTTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_1799	-181	4.7	TGTAGCTCCTGCTACA
Gloeobacter violaceus PCC 7421	gvip454	-77	3.9	AGTAGTCCCTAATACA

Position: -98 Score: 3.7 Sequence: GGTATAAACGACTACT Locus tag: PMM0263
	PMM0263	-98	3.7	GGTATAAACGACTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002	SYNPCC7002_A2208	-52	3.7	GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803	sll0108	-189	4	AGTAGTAAATCATACA
		-18	4.4	TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142	cce_3261	-152	3.5	TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801	PCC8801_1229	-264	5	TGTATTTTTTGATACA
		-229	4.1	AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843	MAE_40010	-213	4.6	TGTATCAACGAATACA
Trichodesmium erythraeum IMS101	Tery_4477	-83	4.9	AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942	Synpcc7942_0442	-151	4.1	TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313	PMT1853	-160	3.8	TGTAACAAAATGAACT
Synechococcus sp. WH 8102	SYNW0253	-100	4.2	TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1	amt1	-190	4.4	TGTATAACGTGATACA

Position: -68 Score: 4.7 Sequence: TGTATTTGTTAATACA Position: 11 Score: 4.1 Sequence: AGTAAATAATTCTACT Locus tag: PMM0370
	PMM0370	-68	4.7	TGTATTTGTTAATACA
		11	4.1	AGTAAATAATTCTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cynA
Ortholog function: cyanate ABC transporter, substrate binding protein
Synechococcus sp. PCC 7002	SYNPCC7002_A0860	-221	4.1	TGTAATTGATTTAACA
Synechococcus elongatus PCC 7942	Synpcc7942_2107	-67	4.4	TGTAACGACGGCTACA
Synechococcus sp. WH 8102	SYNW2487	-103	4.1	TGTAGCAAGTGAGACA
		-66	4.5	AGTATCACCTGATACA

Position: 20 Score: 3.3 Sequence: TGAATTATTTTCTAGA Locus tag: PMM0507
	PMM0507	20	3.3	TGAATTATTTTCTAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbZ
Ortholog function: Photosystem II reaction center protein Z
Cyanothece sp. ATCC 51142	cce_3633	-20	4.2	TGTAACTGTATTAACA
Nostoc sp. PCC 7120	all1258	-161	3.4	TGTTACAAAAATTAGG

Position: -107 Score: 3.8 Sequence: TATAACTTGAAATACT Position: -65 Score: 4.2 Sequence: AGTTACCTTTGATACA Locus tag: PMM0920
	PMM0920	-107	3.8	TATAACTTGAAATACT
		-65	4.2	AGTTACCTTTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002	SYNPCC7002_A1630	-125	3.5	TGTgACccAgacTACA
Synechocystis sp. PCC 6803	slr1756	-98	4.3	GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142	cce_4432	-89	4.5	AGTATCCAATTATACA
		-30	4	TGTATATATTGAAACC
Cyanothece sp. PCC 8801	PCC8801_0808	-92	4	CGTATCATGGTATACA
Cyanothece sp. PCC 7425	Cyan7425_1839	-221	4.9	TGTAACTCATGATACA
Microcystis aeruginosa NIES-843	MAE_19270	-92	4.7	TGTATCgaAaaATACA
Nostoc sp. PCC 7120	alr2328	-142	4.8	TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101	Tery_3834	-250	4	CGTAACACCCGATACA
Synechococcus elongatus PCC 7942	Synpcc7942_2156	-194	4.8	TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313	PMT0601	-79	4.2	GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_1363	-138	4.3	CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421	gvip146	-116	4	CGTATCTCAGACTACA

Position: -61 Score: 4.5 Sequence: TGTTACCTATGCTACA Locus tag: PMM0970
	PMM0970	-61	4.5	TGTTACCTATGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, substrate-binding protein
Prochlorococcus marinus str. MIT 9313	PMT2229	-146	4	TGTTGCAACAGCTACC
		-95	4.7	TGTATCATTCACTACA
Synechococcus sp. WH 8102	SYNW2442	-118	4	TGTTGCAACAGCTACC

Position: -193 Score: 3.5 Sequence: TATATTAATAGATAAA Position: -187 Score: 3.7 Sequence: AATAGATAAAAATACA Position: -63 Score: 3.8 Sequence: TGTATTTTGAAATTCA Position: 9 Score: 3.6 Sequence: AGTATCAAAAGAAGCA Locus tag: PMM1512
	PMM1512	-193	3.5	TATATTAATAGATAAA
		-187	3.7	AATAGATAAAAATACA
		-63	3.8	TGTATTTTGAAATTCA
		9	3.6	AGTATCAAAAGAAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltS
Ortholog function: Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)
Nostoc sp. PCC 7120	alr4344	-265	3.5	TGGAAAAATTAAAACA
Trichodesmium erythraeum IMS101	Tery_0466	-228	4.2	TGTATCCTAGGCAACA

Position: -60 Score: 3.3 Sequence: TTCAATTTAAGATACA Locus tag: PMM1596
	PMM1596	-60	3.3	TTCAATTTAAGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: Isocitrate dehydrogenase (NADP+)
Microcystis aeruginosa NIES-843	MAE_62530	-30	3.7	CGTATAGATAAATACT
Nostoc sp. PCC 7120	alr1827	-6	3.4	TGAAATATGTACAACA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NtcA regulog to Prochlorococcus marinus sp. MED4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --