Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcA regulog to Prochlorococcus marinus sp. MED4

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Prochlorococcus marinus sp. MED4
Orthologous TF(s) PMM0246
Regulated genes 12
Built upon 228 sites [see more]
Predicted regulatory interactions in Prochlorococcus marinus sp. MED4
Locus tag Position Score Sequence
Position: -63
Score: 4.5
Sequence: TGTTACTGTTGATACA
Locus tag: PMM0246
PMM0246 -63 4.5 TGTTACTGTTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcA
Ortholog function: Global nitrogen transcription regulator, Crp family
Synechococcus sp. PCC 7002 SYNPCC7002_A1675 -177 3.9 TGAAGCAAAAAGTACA
Cyanothece sp. PCC 7425 Cyan7425_0755 -173 4.8 TGTATCCGATGATACA
Nostoc sp. PCC 7120 alr4392 -151 3.7 GGTATCATTATGAACA
-111 3.7 AGTATAGGAAAGTACA
Synechococcus elongatus PCC 7942 Synpcc7942_0127 -157 4.7 AGTAGCAGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1799 -181 4.7 TGTAGCTCCTGCTACA
Gloeobacter violaceus PCC 7421 gvip454 -77 3.9 AGTAGTCCCTAATACA
Position: -98
Score: 3.7
Sequence: GGTATAAACGACTACT
Locus tag: PMM0263
PMM0263 -98 3.7 GGTATAAACGACTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002 SYNPCC7002_A2208 -52 3.7 GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803 sll0108 -189 4 AGTAGTAAATCATACA
-18 4.4 TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142 cce_3261 -152 3.5 TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801 PCC8801_1229 -264 5 TGTATTTTTTGATACA
-229 4.1 AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843 MAE_40010 -213 4.6 TGTATCAACGAATACA
Trichodesmium erythraeum IMS101 Tery_4477 -83 4.9 AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_0442 -151 4.1 TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313 PMT1853 -160 3.8 TGTAACAAAATGAACT
Synechococcus sp. WH 8102 SYNW0253 -100 4.2 TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1 amt1 -190 4.4 TGTATAACGTGATACA
Position: -68
Score: 4.7
Sequence: TGTATTTGTTAATACA
Position: 11
Score: 4.1
Sequence: AGTAAATAATTCTACT
Locus tag: PMM0370
PMM0370 -68 4.7 TGTATTTGTTAATACA
11 4.1 AGTAAATAATTCTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cynA
Ortholog function: cyanate ABC transporter, substrate binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0860 -221 4.1 TGTAATTGATTTAACA
Synechococcus elongatus PCC 7942 Synpcc7942_2107 -67 4.4 TGTAACGACGGCTACA
Synechococcus sp. WH 8102 SYNW2487 -103 4.1 TGTAGCAAGTGAGACA
-66 4.5 AGTATCACCTGATACA
Position: 20
Score: 3.3
Sequence: TGAATTATTTTCTAGA
Locus tag: PMM0507
PMM0507 20 3.3 TGAATTATTTTCTAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbZ
Ortholog function: Photosystem II reaction center protein Z
Cyanothece sp. ATCC 51142 cce_3633 -20 4.2 TGTAACTGTATTAACA
Nostoc sp. PCC 7120 all1258 -161 3.4 TGTTACAAAAATTAGG
Position: -107
Score: 3.8
Sequence: TATAACTTGAAATACT
Position: -65
Score: 4.2
Sequence: AGTTACCTTTGATACA
Locus tag: PMM0920
PMM0920 -107 3.8 TATAACTTGAAATACT
-65 4.2 AGTTACCTTTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002 SYNPCC7002_A1630 -125 3.5 TGTgACccAgacTACA
Synechocystis sp. PCC 6803 slr1756 -98 4.3 GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142 cce_4432 -89 4.5 AGTATCCAATTATACA
-30 4 TGTATATATTGAAACC
Cyanothece sp. PCC 8801 PCC8801_0808 -92 4 CGTATCATGGTATACA
Cyanothece sp. PCC 7425 Cyan7425_1839 -221 4.9 TGTAACTCATGATACA
Microcystis aeruginosa NIES-843 MAE_19270 -92 4.7 TGTATCgaAaaATACA
Nostoc sp. PCC 7120 alr2328 -142 4.8 TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_3834 -250 4 CGTAACACCCGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_2156 -194 4.8 TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313 PMT0601 -79 4.2 GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1363 -138 4.3 CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421 gvip146 -116 4 CGTATCTCAGACTACA
Position: -61
Score: 4.5
Sequence: TGTTACCTATGCTACA
Locus tag: PMM0970
PMM0970 -61 4.5 TGTTACCTATGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, substrate-binding protein
Prochlorococcus marinus str. MIT 9313 PMT2229 -146 4 TGTTGCAACAGCTACC
-95 4.7 TGTATCATTCACTACA
Synechococcus sp. WH 8102 SYNW2442 -118 4 TGTTGCAACAGCTACC
Position: -193
Score: 3.5
Sequence: TATATTAATAGATAAA
Position: -187
Score: 3.7
Sequence: AATAGATAAAAATACA
Position: -63
Score: 3.8
Sequence: TGTATTTTGAAATTCA
Position: 9
Score: 3.6
Sequence: AGTATCAAAAGAAGCA
Locus tag: PMM1512
PMM1512 -193 3.5 TATATTAATAGATAAA
-187 3.7 AATAGATAAAAATACA
-63 3.8 TGTATTTTGAAATTCA
9 3.6 AGTATCAAAAGAAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltS
Ortholog function: Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)
Nostoc sp. PCC 7120 alr4344 -265 3.5 TGGAAAAATTAAAACA
Trichodesmium erythraeum IMS101 Tery_0466 -228 4.2 TGTATCCTAGGCAACA
Position: -60
Score: 3.3
Sequence: TTCAATTTAAGATACA
Locus tag: PMM1596
PMM1596 -60 3.3 TTCAATTTAAGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: Isocitrate dehydrogenase (NADP+)
Microcystis aeruginosa NIES-843 MAE_62530 -30 3.7 CGTATAGATAAATACT
Nostoc sp. PCC 7120 alr1827 -6 3.4 TGAAATATGTACAACA