Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of HrcA regulog to Synechococcus sp. WH 8102

Reference regulog properties
Source regulog: HrcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: HrcA
Regulation mode: repressor
Biological process: Heat shock response
Effector: Heat shock
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus sp. WH 8102
Orthologous TF(s) SYNW2279
Regulated genes 2
Built upon 29 sites [see more]
Predicted regulatory interactions in Synechococcus sp. WH 8102
Locus tag Position Score Sequence
Position: -77
Score: 8.6
Sequence: TTGGCACTC-(9)-GAGTGCCAG
Locus tag: SYNW0513
SYNW0513 -77 8.6 TTGGCACTC-(9)-GAGTGCCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: groES
Ortholog function: Heat shock protein 60 family co-chaperone GroES
Cyanothece sp. ATCC 51142 cce_1343 -79 10.2 TTAGCACTC-(9)-GAGTGCTAA
Cyanothece sp. PCC 7425 Cyan7425_5138 -123 10.2 TTAGCACTC-(9)-GAGTGCTAA
Cyanothece sp. PCC 8801 PCC8801_2855 -82 10.2 TTAGCACTC-(9)-GAGTGCTAA
Gloeobacter violaceus PCC 7421 gvip396 -66 9.6 TTAGCACTT-(9)-GAGTGCTAA
Gloeobacter violaceus PCC 7421 gvip139 -92 9.6 TTAGCACTC-(9)-CAGTGCTAA
Microcystis aeruginosa NIES-843 MAE_46070 -74 10.2 TTAGCACTC-(9)-GAGTGCTAA
Nostoc sp. PCC 7120 alr3661 -45 10.2 TTAGCACTC-(9)-GAGTGCTAA
Prochlorococcus marinus str. MIT 9313 PMT1450 -81 9.2 TTGGCACTC-(9)-GAGTGCTAC
Synechococcus elongatus PCC 7942 Synpcc7942_2314 -81 10.2 TTAGCACTC-(9)-GAGTGCTAA
Synechococcus sp. JA-3-3Ab CYA_1406 -108 9.7 CTAGCACTC-(9)-GAGTGCTAA
Synechococcus sp. PCC 7002 SYNPCC7002_A2457 -76 10.2 TTAGCACTC-(9)-GAGTGCTAA
Synechococcus sp. WH 8102 SYNW0513 -77 8.6 TTGGCACTC-(9)-GAGTGCCAG
Synechocystis sp. PCC 6803 slr2075 -74 10.2 TTAGCACTC-(9)-GAGTGCTAA
Thermosynechococcus elongatus BP-1 null -126 10.2 TTAGCACTC-(9)-GAGTGCTAA
Trichodesmium erythraeum IMS101 Tery_4326 -104 10.2 TTAGCACTC-(9)-GAGTGCTAA
Position: -119
Score: 10.2
Sequence: TTAGCACTC-(9)-GAGTGCTAA
Locus tag: SYNW2498
SYNW2498 -119 10.2 TTAGCACTC-(9)-GAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0107
Ortholog function: Conserved hypothetical protein
Cyanothece sp. ATCC 51142 cce_0796 -108 9.4 TTAGCACTC-(9)-AAGTGCTAA
Nostoc sp. PCC 7120 all4757 -166 10.2 TTAGCACTC-(9)-GAGTGCTAA
Synechococcus sp. PCC 7002 SYNPCC7002_A0107 -238 8.6 TTAGCACTC-(9)-AACTGCTAA
Synechococcus sp. WH 8102 SYNW2498 -119 10.2 TTAGCACTC-(9)-GAGTGCTAA
Trichodesmium erythraeum IMS101 Tery_2626 -281 9.4 TTAGCACTC-(9)-GACTGCTAA
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