Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcA regulog to Synechococcus sp. WH 8102

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus sp. WH 8102
Orthologous TF(s) SYNW0275
Regulated genes 7
Built upon 228 sites [see more]
Predicted regulatory interactions in Synechococcus sp. WH 8102
Locus tag Position Score Sequence
Position: -143
Score: 4.1
Sequence: TGTAACTTTGGTTGCA
Locus tag: SYNW0246
SYNW0246 -143 4.1 TGTAACTTTGGTTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1954
Ortholog function: putative two-component sensor histidine kinase
Synechococcus sp. PCC 7002 SYNPCC7002_A1954 -243 4.7 TGTAACAGGAGTTACA
Synechocystis sp. PCC 6803 slr1147 -214 4.7 TGTAATGATAGTTACA
Cyanothece sp. ATCC 51142 cce_3327 -210 4.7 TGTAGTCATAGTTACA
-46 4 TTTATTTTCTGTTACA
Synechococcus sp. WH 8102 SYNW0246 -143 4.1 TGTAACTTTGGTTGCA
Thermosynechococcus elongatus BP-1 tlr0195 -111 4.2 TGTAACCTATCTTACA
Position: -100
Score: 4.2
Sequence: TGTATCAATTAACACA
Locus tag: SYNW0253
SYNW0253 -100 4.2 TGTATCAATTAACACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002 SYNPCC7002_A2208 -52 3.7 GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803 sll0108 -189 4 AGTAGTAAATCATACA
-18 4.4 TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142 cce_3261 -152 3.5 TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801 PCC8801_1229 -264 5 TGTATTTTTTGATACA
-229 4.1 AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843 MAE_40010 -213 4.6 TGTATCAACGAATACA
Trichodesmium erythraeum IMS101 Tery_4477 -83 4.9 AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_0442 -151 4.1 TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313 PMT1853 -160 3.8 TGTAACAAAATGAACT
Synechococcus sp. WH 8102 SYNW0253 -100 4.2 TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1 amt1 -190 4.4 TGTATAACGTGATACA
Position: 1
Score: 3.7
Sequence: TGTTGCAAACGTTTCA
Locus tag: SYNW2440
SYNW2440 1 3.7 TGTTGCAAACGTTTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtC
Ortholog function: Urea ABC transporter, permease protein 2
Synechococcus sp. PCC 7002 SYNPCC7002_A0396 -127 4.1 TGTATCAAGTGTCACA
Cyanothece sp. PCC 7425 Cyan7425_2258 -148 3.7 TGTATAATAGATCACA
Microcystis aeruginosa NIES-843 MAE_06200 -170 4.7 AGTAGCAAAAATTACA
-140 4.6 AGTAGCGAAAGTTACA
Nostoc sp. PCC 7120 all1949 -116 4.3 AGTATCAAAAATAACA
Prochlorococcus marinus str. MIT 9313 PMT2227 -146 4 TGTTGCAACAGCTACC
-95 4.7 TGTATCATTCACTACA
Synechococcus sp. WH 8102 SYNW2440 -118 4 TGTTGCAACAGCTACC
Thermosynechococcus elongatus BP-1 tlr1122 -81 4 TGTAGCCTAGCATACA
Position: -103
Score: 4.1
Sequence: TGTAGCAAGTGAGACA
Position: -66
Score: 4.5
Sequence: AGTATCACCTGATACA
Locus tag: SYNW2487
SYNW2487 -103 4.1 TGTAGCAAGTGAGACA
-66 4.5 AGTATCACCTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cynA
Ortholog function: cyanate ABC transporter, substrate binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0860 -221 4.1 TGTAATTGATTTAACA
Synechococcus elongatus PCC 7942 Synpcc7942_2107 -67 4.4 TGTAACGACGGCTACA
Synechococcus sp. WH 8102 SYNW2487 -103 4.1 TGTAGCAAGTGAGACA
-66 4.5 AGTATCACCTGATACA