Propagation of NtcA regulog to Synechococcus sp. WH 8102

Reference regulog properties
Source regulog:	NtcA - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Synechococcus sp. WH 8102
Orthologous TF(s)	SYNW0275
Regulated genes	7

Built upon 228 sites [see more]

Predicted regulatory interactions in *Synechococcus sp. WH 8102*
	Locus tag	Position	Score	Sequence
Position: -143 Score: 4.1 Sequence: TGTAACTTTGGTTGCA Locus tag: SYNW0246
	SYNW0246	-143	4.1	TGTAACTTTGGTTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1954
Ortholog function: putative two-component sensor histidine kinase
Synechococcus sp. PCC 7002	SYNPCC7002_A1954	-243	4.7	TGTAACAGGAGTTACA
Synechocystis sp. PCC 6803	slr1147	-214	4.7	TGTAATGATAGTTACA
Cyanothece sp. ATCC 51142	cce_3327	-210	4.7	TGTAGTCATAGTTACA
		-46	4	TTTATTTTCTGTTACA
Synechococcus sp. WH 8102	SYNW0246	-143	4.1	TGTAACTTTGGTTGCA
Thermosynechococcus elongatus BP-1	tlr0195	-111	4.2	TGTAACCTATCTTACA

Position: -100 Score: 4.2 Sequence: TGTATCAATTAACACA Locus tag: SYNW0253
	SYNW0253	-100	4.2	TGTATCAATTAACACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002	SYNPCC7002_A2208	-52	3.7	GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803	sll0108	-189	4	AGTAGTAAATCATACA
		-18	4.4	TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142	cce_3261	-152	3.5	TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801	PCC8801_1229	-264	5	TGTATTTTTTGATACA
		-229	4.1	AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843	MAE_40010	-213	4.6	TGTATCAACGAATACA
Trichodesmium erythraeum IMS101	Tery_4477	-83	4.9	AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942	Synpcc7942_0442	-151	4.1	TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313	PMT1853	-160	3.8	TGTAACAAAATGAACT
Synechococcus sp. WH 8102	SYNW0253	-100	4.2	TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1	amt1	-190	4.4	TGTATAACGTGATACA

Position: 1 Score: 3.7 Sequence: TGTTGCAAACGTTTCA Locus tag: SYNW2440
	SYNW2440	1	3.7	TGTTGCAAACGTTTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtC
Ortholog function: Urea ABC transporter, permease protein 2
Synechococcus sp. PCC 7002	SYNPCC7002_A0396	-127	4.1	TGTATCAAGTGTCACA
Cyanothece sp. PCC 7425	Cyan7425_2258	-148	3.7	TGTATAATAGATCACA
Microcystis aeruginosa NIES-843	MAE_06200	-170	4.7	AGTAGCAAAAATTACA
		-140	4.6	AGTAGCGAAAGTTACA
Nostoc sp. PCC 7120	all1949	-116	4.3	AGTATCAAAAATAACA
Prochlorococcus marinus str. MIT 9313	PMT2227	-146	4	TGTTGCAACAGCTACC
		-95	4.7	TGTATCATTCACTACA
Synechococcus sp. WH 8102	SYNW2440	-118	4	TGTTGCAACAGCTACC
Thermosynechococcus elongatus BP-1	tlr1122	-81	4	TGTAGCCTAGCATACA

Position: -103 Score: 4.1 Sequence: TGTAGCAAGTGAGACA Position: -66 Score: 4.5 Sequence: AGTATCACCTGATACA Locus tag: SYNW2487
	SYNW2487	-103	4.1	TGTAGCAAGTGAGACA
		-66	4.5	AGTATCACCTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cynA
Ortholog function: cyanate ABC transporter, substrate binding protein
Synechococcus sp. PCC 7002	SYNPCC7002_A0860	-221	4.1	TGTAATTGATTTAACA
Synechococcus elongatus PCC 7942	Synpcc7942_2107	-67	4.4	TGTAACGACGGCTACA
Synechococcus sp. WH 8102	SYNW2487	-103	4.1	TGTAGCAAGTGAGACA
		-66	4.5	AGTATCACCTGATACA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NtcA regulog to Synechococcus sp. WH 8102

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --