Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Prochlorococcus marinus str. SS120

Reference regulog properties
Source regulog: Fur - Cyanobacteria
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Cyanobacteria
Propagated regulon:
Target genome Prochlorococcus marinus str. SS120
Orthologous TF(s) Pro0794
Regulated genes 7
Built upon 167 sites [see more]
Predicted regulatory interactions in Prochlorococcus marinus str. SS120
Locus tag Position Score Sequence
Position: -122
Score: 3.4
Sequence: TATGAATATTTTGATTGTT
Position: -115
Score: 3.8
Sequence: ATTTTGATTGTTTCTCGTT
Position: 32
Score: 2.9
Sequence: CTTGCTCTTTGTTGGCATC
Locus tag: Pro0357
Pro0357 -122 3.4 TATGAATATTTTGATTGTT
-115 3.8 ATTTTGATTGTTTCTCGTT
32 2.9 CTTGCTCTTTGTTGGCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbM
Ortholog function: Photosystem II reaction center M protein
Cyanothece sp. ATCC 51142 cce_0893 -29 3 TTTCTTATAATTTCTTAAC
Cyanothece sp. PCC 8801 PCC8801_2861 -49 3.8 ATTGTAAAAAAATATTAAC
Nostoc sp. PCC 7120 asl0883 -90 3.5 ATTCTTAATTTTTTGTAAT
Synechococcus sp. JA-3-3Ab CYA_0642 -92 2.8 ATTAAAAATATGATTTAAA
Position: -216
Score: 3
Sequence: ATATATAATCTTTCCTTTT
Position: -174
Score: 3.6
Sequence: GATTAGATTCATTAGAATT
Position: 8
Score: 3.4
Sequence: CTTGACTATTAGTCTGACT
Position: 20
Score: 3
Sequence: TCTGACTTCAAATTTGATT
Locus tag: Pro0443
Pro0443 -216 3 ATATATAATCTTTCCTTTT
-174 3.6 GATTAGATTCATTAGAATT
8 3.4 CTTGACTATTAGTCTGACT
20 3 TCTGACTTCAAATTTGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ctaA
Ortholog function: Heme A synthase
Cyanothece sp. PCC 8801 PCC8801_0256 -185 2.2 TTTTATTAACTTATGTAAA
Microcystis aeruginosa NIES-843 MAE_22920 -282 2.5 TCTTTTCAATATTTTTAAT
Trichodesmium erythraeum IMS101 Tery_1780 -278 3.5 ATTGTTAAAATTATGAAAT
-167 3.3 ATTAAAAAAAAATTTAAAA
Synechococcus elongatus PCC 7942 Synpcc7942_2601 -158 4.3 GATGACAATATTTTTCGAT
Prochlorococcus marinus str. MIT 9313 PMT1340 -30 2.6 ATTTAAATTATTTTATTGT
Position: -175
Score: 3.1
Sequence: AAAAAAAATAATTTGTTAT
Position: -152
Score: 2.9
Sequence: ATTTAGGCTCATTCTCCTC
Locus tag: Pro0544
Pro0544 -175 3.1 AAAAAAAATAATTTGTTAT
-152 2.9 ATTTAGGCTCATTCTCCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlL
Ortholog function: Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A2347 -126 3.6 TTTTATAAAAACTCTAAGT
Synechocystis sp. PCC 6803 slr0749 -173 3.3 ATTTTATTTTTGTCTCAAT
Cyanothece sp. PCC 8801 PCC8801_0791 -242 2.7 ATTTAGTAAATTTTAAAGT
Microcystis aeruginosa NIES-843 MAE_16230 -150 2.8 ATTTATATAATTTTTAAGC
Thermosynechococcus elongatus BP-1 null -211 2.8 TTTTGTATTTTTGTTTAAT
Position: -150
Score: 3.3
Sequence: ATTACTCATATTTATCAGC
Position: -147
Score: 3.3
Sequence: ACTCATATTTATCAGCTAT
Position: -93
Score: 3
Sequence: AACAAAATATATATTGAAT
Position: -76
Score: 3.2
Sequence: ATTCCGAATTTTTCCTGTT
Position: -53
Score: 2.9
Sequence: ATTGCATCTTTCGATTAAT
Locus tag: Pro0546
Pro0546 -150 3.3 ATTACTCATATTTATCAGC
-147 3.3 ACTCATATTTATCAGCTAT
-93 3 AACAAAATATATATTGAAT
-76 3.2 ATTCCGAATTTTTCCTGTT
-53 2.9 ATTGCATCTTTCGATTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlN
Ortholog function: Light-independent protochlorophyllide reductase, subunit N
Synechococcus sp. PCC 7002 SYNPCC7002_A2345 -126 3.6 TTTTATAAAAACTCTAAGT
Cyanothece sp. ATCC 51142 cce_4534 -118 3.7 TTTGAGTTTTATTTAAAAT
Cyanothece sp. PCC 8801 PCC8801_0789 -242 2.7 ATTTAGTAAATTTTAAAGT
Microcystis aeruginosa NIES-843 MAE_16250 -107 2.8 ATTAAGTAATTCTTTATAT
Thermosynechococcus elongatus BP-1 null -211 2.8 TTTTGTATTTTTGTTTAAT
Position: -128
Score: 4.5
Sequence: ATTGATAAACAAAATAATT
Position: -122
Score: 3.3
Sequence: AAACAAAATAATTTTCTTA
Position: -120
Score: 3
Sequence: ACAAAATAATTTTCTTAAT
Position: -104
Score: 3.1
Sequence: AATGATATGAACTCATAAA
Locus tag: Pro0903
Pro0903 -128 4.5 ATTGATAAACAAAATAATT
-122 3.3 AAACAAAATAATTTTCTTA
-120 3 ACAAAATAATTTTCTTAAT
-104 3.1 AATGATATGAACTCATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlH
Ortholog function: Protoporphyrin IX magnesium chelatase, subunit H
Synechococcus sp. PCC 7002 SYNPCC7002_A1018 -57 3.8 ATAGTTATAAATTTTTAAT
Cyanothece sp. ATCC 51142 cce_4358 -183 2.7 AATAAATAATTTTTGTAAA
-138 2.3 ATTTGTCAATATTTGTAAC
Cyanothece sp. PCC 8801 PCC8801_4320 -186 2.3 ATTTGTCAATATTTGTAAC
Microcystis aeruginosa NIES-843 MAE_12190 -247 2.8 ATTAAATATTAATTTTTGT
Nostoc sp. PCC 7120 all4365 -272 2.9 GTTTTTTATTTTTTTCATC
-232 3 AATATTAATTTTTCTTTAC
Trichodesmium erythraeum IMS101 Tery_3224 -65 3 GTTTAAAATTTTTTGATAT
Position: -166
Score: 3.3
Sequence: ACTGAAATGTATTGTGTAT
Position: -130
Score: 3.5
Sequence: CATGAAAAGGTATTTCTTT
Position: -116
Score: 3.1
Sequence: TCTTTGTTTGATTAGCAAT
Locus tag: Pro1254
Pro1254 -166 3.3 ACTGAAATGTATTGTGTAT
-130 3.5 CATGAAAAGGTATTTCTTT
-116 3.1 TCTTTGTTTGATTAGCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbD
Ortholog function: Photosystem II, reaction center protein
Synechocystis sp. PCC 6803 sll0849 -298 3.3 AATGTAAAATATTTGCTAA
Cyanothece sp. ATCC 51142 cce_0660 -298 3.4 ATTGTAAATTTTTTGCTAA
Cyanothece sp. PCC 7425 Cyan7425_5031 -91 3.1 GTTTATAAACTTTCGTAAA
Microcystis aeruginosa NIES-843 MAE_41160 -274 2.9 ATTTGTAATTTTTTGCTAA
Synechococcus sp. JA-3-3Ab CYA_2647 -106 3 TTTATTAATTTTTCGTAAG
Position: -327
Score: 3.4
Sequence: TATAAAAATTACTTTTTAT
Position: -326
Score: 3.3
Sequence: ATAAAAATTACTTTTTATT
Position: -305
Score: 2.9
Sequence: TACATTAATTTTAATGATT
Position: -198
Score: 3.7
Sequence: AATTAGAAAAATTTTCCTG
Position: -98
Score: 3
Sequence: TTTCATTCAATTTAGAAAT
Position: -17
Score: 3.4
Sequence: CTCGAGGAAAAATCTCGAT
Locus tag: Pro1672
Pro1672 -327 3.4 TATAAAAATTACTTTTTAT
-326 3.3 ATAAAAATTACTTTTTATT
-305 2.9 TACATTAATTTTAATGATT
-198 3.7 AATTAGAAAAATTTTCCTG
-98 3 TTTCATTCAATTTAGAAAT
-17 3.4 CTCGAGGAAAAATCTCGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: psaA
Ortholog function: Photosystem I P700 chlorophyll A apoprotein A1
Synechococcus sp. PCC 7002 SYNPCC7002_A1961 -206 3.4 AGTTTTAAATATTGTTAAT
Cyanothece sp. ATCC 51142 cce_0989 -205 3.4 AATTTTAATTATTGTTAAG
Microcystis aeruginosa NIES-843 MAE_47560 -297 3.2 ATTAATAAACTTTTGTAAA
Nostoc sp. PCC 7120 alr5154 -177 3.4 ATTTTGAATTATTGTTAAA
Trichodesmium erythraeum IMS101 Tery_4669 -80 4 ATTGATAATTCTTTACAAC
Synechococcus elongatus PCC 7942 Synpcc7942_2049 -296 3.3 TCTTTGAATTATTGTTAAT
Gloeobacter violaceus PCC 7421 gvip470 -195 2.2 TTTTTAAAAATTGTTAAGT
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