Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Fur regulog to Synechococcus sp. JA-2-3B'a(2-13)

Reference regulog properties
Source regulog: Fur - Cyanobacteria
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus sp. JA-2-3B'a(2-13)
Orthologous TF(s) CYB_2285
Regulated genes 9
Built upon 167 sites [see more]
Predicted regulatory interactions in Synechococcus sp. JA-2-3B'a(2-13)
Locus tag Position Score Sequence
Position: -29
Score: 3.8
Sequence: AGTGAAAATCTTTTGCAAC
Locus tag: CYB_0190
CYB_0190 -29 3.8 AGTGAAAATCTTTTGCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: afuC
Ortholog function: Predicted Fe(3+) ABC transport system, ATP-binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0871 -83 5.1 GTTGAGAATAGTTCTTAAT
Cyanothece sp. ATCC 51142 cce_3801 -163 4.2 ATTGAAAATTAATGCTAAT
Cyanothece sp. PCC 7425 Cyan7425_3510 -105 5.3 ATTGAGAATAATTTTCAAA
-60 4 GTTGAATAATAGTCTTAAT
Microcystis aeruginosa NIES-843 MAE_12460 -117 4.4 TTTGAGAAAGTTTCCTAAT
Trichodesmium erythraeum IMS101 Tery_3222 -94 5.1 AATGAAAAAAATATTCAAT
Synechococcus elongatus PCC 7942 Synpcc7942_1406 -81 4.2 ATTGAGAATAAATCGCAGA
Synechococcus sp. JA-3-3Ab CYA_2794 -26 3.8 AGTGAAAATCTTTTGCAAC
Gloeobacter violaceus PCC 7421 gll1012 -64 3.7 ATTGACAATTAATTGCAGC
Position: -92
Score: 3.2
Sequence: ATTAAAAATATGACTTAAA
Position: -72
Score: 3.1
Sequence: TGTTACAATACTTAGCAAC
Position: -1
Score: 3.3
Sequence: TATGGCAACGATTCGCTTC
Locus tag: CYB_0280
CYB_0280 -92 3.2 ATTAAAAATATGACTTAAA
-72 3.1 TGTTACAATACTTAGCAAC
-1 3.3 TATGGCAACGATTCGCTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdx
Ortholog function: Predicted ferredoxin
Nostoc sp. PCC 7120 asl0884 -90 3.5 ATTCTTAATTTTTTGTAAT
Synechococcus sp. JA-3-3Ab CYA_0643 -92 2.8 ATTAAAAATATGATTTAAA
Position: -45
Score: 3
Sequence: TCTTCGATCTTTCATCAAT
Locus tag: CYB_0661
CYB_0661 -45 3 TCTTCGATCTTTCATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ctaA
Ortholog function: Heme A synthase
Cyanothece sp. PCC 8801 PCC8801_0256 -185 2.2 TTTTATTAACTTATGTAAA
Microcystis aeruginosa NIES-843 MAE_22920 -282 2.5 TCTTTTCAATATTTTTAAT
Trichodesmium erythraeum IMS101 Tery_1780 -278 3.5 ATTGTTAAAATTATGAAAT
-167 3.3 ATTAAAAAAAAATTTAAAA
Synechococcus elongatus PCC 7942 Synpcc7942_2601 -158 4.3 GATGACAATATTTTTCGAT
Prochlorococcus marinus str. MIT 9313 PMT1340 -30 2.6 ATTTAAATTATTTTATTGT
Position: -323
Score: 3.8
Sequence: AATGAAAGCAATTTACAAG
Position: -218
Score: 3.4
Sequence: CCTGGAAACGGTTCTCGAT
Position: -48
Score: 3.8
Sequence: TTTCATTAACGTCCTCATT
Locus tag: CYB_0854
CYB_0854 -323 3.8 AATGAAAGCAATTTACAAG
-218 3.4 CCTGGAAACGGTTCTCGAT
-48 3.8 TTTCATTAACGTCCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbD
Ortholog function: Photosystem II, reaction center protein
Synechocystis sp. PCC 6803 sll0849 -298 3.3 AATGTAAAATATTTGCTAA
Cyanothece sp. ATCC 51142 cce_0660 -298 3.4 ATTGTAAATTTTTTGCTAA
Cyanothece sp. PCC 7425 Cyan7425_5031 -91 3.1 GTTTATAAACTTTCGTAAA
Microcystis aeruginosa NIES-843 MAE_41160 -274 2.9 ATTTGTAATTTTTTGCTAA
Synechococcus sp. JA-3-3Ab CYA_2647 -106 3 TTTATTAATTTTTCGTAAG
Position: -185
Score: 3.4
Sequence: ATTGCGAATTATTACGACC
Locus tag: CYB_0908
CYB_0908 -185 3.4 ATTGCGAATTATTACGACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlH
Ortholog function: Protoporphyrin IX magnesium chelatase, subunit H
Synechococcus sp. PCC 7002 SYNPCC7002_A1018 -57 3.8 ATAGTTATAAATTTTTAAT
Cyanothece sp. ATCC 51142 cce_4358 -183 2.7 AATAAATAATTTTTGTAAA
-138 2.3 ATTTGTCAATATTTGTAAC
Cyanothece sp. PCC 8801 PCC8801_4320 -186 2.3 ATTTGTCAATATTTGTAAC
Microcystis aeruginosa NIES-843 MAE_12190 -247 2.8 ATTAAATATTAATTTTTGT
Nostoc sp. PCC 7120 all4365 -272 2.9 GTTTTTTATTTTTTTCATC
-232 3 AATATTAATTTTTCTTTAC
Trichodesmium erythraeum IMS101 Tery_3224 -65 3 GTTTAAAATTTTTTGATAT
Position: -324
Score: 3.6
Sequence: ATTGAGACCATTCTTGATT
Position: -212
Score: 4
Sequence: ATCTAGAATTGTTTTCTTT
Position: -185
Score: 3.2
Sequence: GATGAAAGTATATCTAAAA
Position: -96
Score: 3
Sequence: TCTGGGAACTTCTAGCTTT
Locus tag: CYB_1016
CYB_1016 -324 3.6 ATTGAGACCATTCTTGATT
-212 4 ATCTAGAATTGTTTTCTTT
-185 3.2 GATGAAAGTATATCTAAAA
-96 3 TCTGGGAACTTCTAGCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlL
Ortholog function: Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A2347 -126 3.6 TTTTATAAAAACTCTAAGT
Synechocystis sp. PCC 6803 slr0749 -173 3.3 ATTTTATTTTTGTCTCAAT
Cyanothece sp. PCC 8801 PCC8801_0791 -242 2.7 ATTTAGTAAATTTTAAAGT
Microcystis aeruginosa NIES-843 MAE_16230 -150 2.8 ATTTATATAATTTTTAAGC
Thermosynechococcus elongatus BP-1 null -211 2.8 TTTTGTATTTTTGTTTAAT
Position: -236
Score: 3
Sequence: GTTGCAGAAAAGTTACATT
Position: -215
Score: 3.1
Sequence: CGTAACAACATTTGCCATT
Position: -72
Score: 2.9
Sequence: GGCAAAATCTCTTCTCATT
Locus tag: CYB_2211
CYB_2211 -236 3 GTTGCAGAAAAGTTACATT
-215 3.1 CGTAACAACATTTGCCATT
-72 2.9 GGCAAAATCTCTTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcF
Ortholog function: Allophycocyanin, beta subunit
Synechococcus sp. PCC 7002 SYNPCC7002_A1631 -257 3.3 TTTTATTATTTTTTTTAAA
Cyanothece sp. ATCC 51142 cce_1944 -151 4.4 ATTGCTAAAATCTATAATT
Cyanothece sp. PCC 7425 Cyan7425_1838 -245 3 TTTTATATTATCTTTTAAC
Thermosynechococcus elongatus BP-1 null -157 3.1 AATTATGAACTTTTGTAAT
Position: -200
Score: 4.2
Sequence: CTTGAGATCTCCTATCATT
Position: -165
Score: 4.5
Sequence: CTTGAATAAAAGTCTCAAT
Locus tag: CYB_2669
CYB_2669 -200 4.2 CTTGAGATCTCCTATCATT
-165 4.5 CTTGAATAAAAGTCTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufA
Ortholog function: Fe ABC transport system, substrate-binding protein
Synechocystis sp. PCC 6803 slr0513 -240 3.9 AATAATAATCTCTTGCAAT
-187 4.1 ATTGCACTTTATTTGCAAT
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