Propagation of Crp regulog to Cyanothece sp. PCC 8802
| Source regulog: | Crp - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Cyanothece sp. PCC 8802 |
| Orthologous TF(s) | Cyan8802_0916 |
| Regulated genes | 21 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -35
Score: 4.6 Sequence: TGTGAGCTAAATCACT
Locus tag: Cyan8802_0017
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| Cyan8802_0017 | -35 | 4.6 | TGTGAGCTAAATCACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: slr1503 | ||||
| Ortholog function: Predicted aldo/keto reductase | ||||
| Synechocystis sp. PCC 6803 | slr1503 | -1 | 3.8 | TATGACAATTAGCACC |
| Cyanothece sp. ATCC 51142 | cce_2512 | -72 | 4.1 | TGTGAGTTTTGTCACG |
| Cyanothece sp. PCC 8801 | PCC8801_0019 | -35 | 4.6 | TGTGAGCTAAATCACT |
| Trichodesmium erythraeum IMS101 | Tery_2155 | -99 | 3.9 | CATGGTTTTAATCATA |
|
Position: -153
Score: 3.8 Sequence: TTTGATCTCGATCATT
Locus tag: Cyan8802_0088
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| Cyan8802_0088 | -153 | 3.8 | TTTGATCTCGATCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SYNPCC7002_A0687 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Synechocystis sp. PCC 6803 | slr0013 | -56 | 4.1 | TTTGATCAAAGTCCTA |
| Cyanothece sp. ATCC 51142 | cce_3288 | -137 | 3.8 | TTTGACTTAAATAACC |
| Cyanothece sp. PCC 8801 | PCC8801_0091 | -153 | 3.8 | TTTGATCTCGATCATT |
| Prochlorococcus marinus str. MIT 9313 | PMT0719 | 17 | 3.7 | TTTGAAACAATTCACC |
|
Position: -146
Score: 3.9 Sequence: TGTTGTCAAAGTCACA
Position: -41
Score: 3.8 Sequence: GTTGATTTAAGTCCTA
Locus tag: Cyan8802_0425
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| Cyan8802_0425 | -146 | 3.9 | TGTTGTCAAAGTCACA | |
| -41 | 3.8 | GTTGATTTAAGTCCTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sufR | ||||
| Ortholog function: Iron-sulfur cluster biogenesis regulator, DeoR family | ||||
| Cyanothece sp. ATCC 51142 | cce_0683 | -95 | 3.9 | TGTTGTCAAAGTCACA |
| Cyanothece sp. PCC 8801 | PCC8801_0414 | -41 | 3.8 | GTTGATTTAAGTCCTA |
| Microcystis aeruginosa NIES-843 | MAE_23100 | -128 | 3.7 | TGTTGTCAAAGTCACG |
| Nostoc sp. PCC 7120 | all2491 | -42 | 3.7 | TGTTGTCAAAGTCAAA |
| Prochlorococcus marinus str. MIT 9313 | PMT1607 | -71 | 3.9 | CCTGATCTAAGGCAAC |
|
Position: -29
Score: 3.3 Sequence: TGTCATCATTATCTCA
Locus tag: Cyan8802_0586
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| Cyan8802_0586 | -29 | 3.3 | TGTCATCATTATCTCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: coxC | ||||
| Ortholog function: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) | ||||
| Cyanothece sp. ATCC 51142 | cce_1975 | -78 | 3.7 | TGTGATAAAAAAGCCA |
| Nostoc sp. PCC 7120 | alr2516 | -222 | 3.1 | TCTGGAATAATTCCCC |
|
Position: -239
Score: 3.8 Sequence: GGTGAAATTAGGCAAA
Locus tag: Cyan8802_1108
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| Cyan8802_1108 | -239 | 3.8 | GGTGAAATTAGGCAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rlpA | ||||
| Ortholog function: Predicted lipoprotein A | ||||
| Cyanothece sp. ATCC 51142 | cce_3687 | -215 | 4 | TGTTAACTAGATCACA |
| Cyanothece sp. PCC 8801 | PCC8801_1079 | -239 | 3.8 | GGTGAAATTAGGCAAA |
| Cyanothece sp. PCC 7425 | Cyan7425_3340 | -328 | 4.2 | CGTGATTCGGATCACA |
| Thermosynechococcus elongatus BP-1 | tlr0333 | -317 | 4.8 | GGTGATCTGAGTCACA |
|
Position: -80
Score: 3.9 Sequence: TTTGAAAATTATCACC
Locus tag: Cyan8802_1811
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| Cyan8802_1811 | -80 | 3.9 | TTTGAAAATTATCACC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nifS | ||||
| Ortholog function: Cysteine desulfurase (EC 2.8.1.7) | ||||
| Cyanothece sp. ATCC 51142 | cce_0557 | -123 | 4 | GGTGGTATAAATGACA |
| Cyanothece sp. PCC 8801 | PCC8801_1783 | -80 | 3.9 | TTTGAAAATTATCACC |
| Cyanothece sp. PCC 7425 | Cyan7425_2362 | -40 | 3.9 | ACTGTTATAAAGCACC |
|
Position: 21
Score: 4.3 Sequence: AGTGACAATGTTCATA
Locus tag: Cyan8802_1818
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| Cyan8802_1818 | 21 | 4.3 | AGTGACAATGTTCATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nifX | ||||
| Ortholog function: Nitrogen fixation protein | ||||
| Cyanothece sp. PCC 8801 | PCC8801_1790 | 21 | 4.3 | AGTGACAATGTTCATA |
| Nostoc sp. PCC 7120 | all1436 | 21 | 4.3 | AGTGACAGAATTCATA |
| Trichodesmium erythraeum IMS101 | Tery_4140 | 21 | 4.3 | ACTGATTTTATTCATA |
|
Position: -177
Score: 4 Sequence: TGTGATACTCATCATA
Locus tag: Cyan8802_2068
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| Cyan8802_2068 | -177 | 4 | TGTGATACTCATCATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppa | ||||
| Ortholog function: inorganic pyrophosphatase | ||||
| Cyanothece sp. ATCC 51142 | cce_4329 | -265 | 4.5 | TGTGATTATTATCAAA |
| -104 | 4.4 | TGTGATTATTATCAAC | ||
| Cyanothece sp. PCC 8801 | PCC8801_2042 | -177 | 4 | TGTGATACTCATCATA |
| Cyanothece sp. PCC 7425 | Cyan7425_1645 | -273 | 3.7 | ACTGATTAAGGGCACT |
| Nostoc sp. PCC 7120 | all3570 | -160 | 3.7 | TGTGATATTTTTCCAC |
| Trichodesmium erythraeum IMS101 | Tery_1519 | -237 | 3.9 | AATGATAGAGTTCACG |
|
Position: -74
Score: 4.8 Sequence: AGTGATCTGGGTCACA
Locus tag: Cyan8802_2422
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| Cyan8802_2422 | -74 | 4.8 | AGTGATCTGGGTCACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: murF | ||||
| Ortholog function: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2693 | -92 | 4.1 | GGTGACAAATATCACT |
| Synechocystis sp. PCC 6803 | slr1351 | -101 | 5 | GGTGATCTAGATCACA |
| Cyanothece sp. ATCC 51142 | cce_4424 | -83 | 5.1 | TGTGATCTTGATCACA |
| Cyanothece sp. PCC 8801 | PCC8801_2372 | -74 | 4.8 | AGTGATCTGGGTCACA |
| Synechococcus sp. JA-3-3Ab | CYA_0077 | -32 | 3.8 | ATTGACTAGAGTCATG |
| Thermosynechococcus elongatus BP-1 | null | 3 | 4.2 | ATTGATCTAAAACAAC |
|
Position: 5
Score: 3.9 Sequence: GATGTTTAAAGTCACC
Locus tag: Cyan8802_3313
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| Cyan8802_3313 | 5 | 3.9 | GATGTTTAAAGTCACC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: apcC | ||||
| Ortholog function: Phycobilisome linker polypeptide, allophycocyanin-associated | ||||
| Cyanothece sp. ATCC 51142 | cce_2911 | 5 | 4.1 | AATGTTTAAAGTCACC |
| Cyanothece sp. PCC 8801 | PCC8801_2788 | 5 | 3.9 | GATGTTTAAAGTCACC |
| Microcystis aeruginosa NIES-843 | MAE_10240 | 5 | 4.1 | GATGTTCAAAATCACC |
| Trichodesmium erythraeum IMS101 | Tery_3647 | 5 | 4.2 | AATGTTTAAGATCACA |
| Synechococcus sp. JA-3-3Ab | CYA_2225 | 5 | 3.7 | CATGTTTAAGATCACG |
| Synechococcus sp. WH 8102 | SYNW0483 | 5 | 3.9 | GTTGTTCAAAGTCACC |
| Thermosynechococcus elongatus BP-1 | null | -233 | 3.6 | CATGAAAGAAGTCACC |
|
Position: -31
Score: 4 Sequence: ATTGAGCTAAAGCATA
Locus tag: Cyan8802_3549
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| Cyan8802_3549 | -31 | 4 | ATTGAGCTAAAGCATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gap2 | ||||
| Ortholog function: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59) | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0106 | -65 | 3.7 | TATGATTGGGGTCATC |
| Cyanothece sp. PCC 8801 | PCC8801_2557 | -31 | 4 | ATTGAGCTAAAGCATA |
| Nostoc sp. PCC 7120 | all5062 | -56 | 3.8 | TATGATTGGGGTCAAA |
| -1 | 4.1 | TGTGATTAGAGTCGCA | ||
| Trichodesmium erythraeum IMS101 | Tery_4030 | -410 | 3.6 | TATGATAATTCTCAAG |
|
Position: -250
Score: 4.3 Sequence: TTTGATTTAATTCAAC
Locus tag: Cyan8802_3758
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| Cyan8802_3758 | -250 | 4.3 | TTTGATTTAATTCAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: chlA-II | ||||
| Ortholog function: Magnesium-protoporphyrin IX monomethyl ester cyclase 2 (EC 1.14.13.81) | ||||
| Synechocystis sp. PCC 6803 | sll1874 | -403 | 4.8 | TGTGAGAATAATCACA |
| Cyanothece sp. PCC 8801 | PCC8801_3705 | -250 | 4.3 | TTTGATTTAATTCAAC |
| Microcystis aeruginosa NIES-843 | MAE_46620 | -45 | 3.7 | TATGTTTAAAATCCTA |
|
Position: -271
Score: 3.7 Sequence: AGTGACCTAAATTCCG
Locus tag: Cyan8802_4392
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| Cyan8802_4392 | -271 | 3.7 | AGTGACCTAAATTCCG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sigF | ||||
| Ortholog function: RNA polymerase sigma-37 | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1924 | -223 | 4.3 | TTTGATAAAAATCAAT |
| Cyanothece sp. PCC 8801 | PCC8801_4329 | -271 | 3.7 | AGTGACCTAAATTCCG |
| Cyanothece sp. PCC 7425 | Cyan7425_3949 | -91 | 4.4 | TGTGTTCTAGATCACT |
| Trichodesmium erythraeum IMS101 | Tery_3916 | -118 | 4.1 | TGTGTTTGATATCACA |
| Thermosynechococcus elongatus BP-1 | null | -174 | 4.7 | TGTGGTCAAGATCACA |