Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Crp regulog to Cyanothece sp. PCC 7425

Reference regulog properties
Source regulog: Crp - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process:
Effector: Cyclic 3',5'-AMP
Phylum: Cyanobacteria
Propagated regulon:
Target genome Cyanothece sp. PCC 7425
Orthologous TF(s) Cyan7425_1533
Regulated genes 12
Built upon 106 sites [see more]
Predicted regulatory interactions in Cyanothece sp. PCC 7425
Locus tag Position Score Sequence
Position: -107
Score: 4.8
Sequence: AGTGATCAAAGTCATG
Locus tag: Cyan7425_1076
Cyan7425_1076 -107 4.8 AGTGATCAAAGTCATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: Cyan7425_1076
Ortholog function: Hypothetical protein
Cyanothece sp. PCC 7425 Cyan7425_1076 -107 4.8 AGTGATCAAAGTCATG
Position: -40
Score: 3.9
Sequence: ACTGTTATAAAGCACC
Locus tag: Cyan7425_2361
Cyan7425_2361 -40 3.9 ACTGTTATAAAGCACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifB
Ortholog function: FeMo nitrogenase cofactor biosynthesis protein
Cyanothece sp. ATCC 51142 cce_0554 -123 4 GGTGGTATAAATGACA
Cyanothece sp. PCC 7425 Cyan7425_2361 -40 3.9 ACTGTTATAAAGCACC
Nostoc sp. PCC 7120 all1517 -299 3.1 ACTGCTATAAATCTTA
Trichodesmium erythraeum IMS101 Tery_4133 -356 3.7 TATGACTTATAGCATG
Position: -328
Score: 4.2
Sequence: CGTGATTCGGATCACA
Locus tag: Cyan7425_3340
Cyan7425_3340 -328 4.2 CGTGATTCGGATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rlpA
Ortholog function: Predicted lipoprotein A
Cyanothece sp. ATCC 51142 cce_3687 -215 4 TGTTAACTAGATCACA
Cyanothece sp. PCC 8801 PCC8801_1079 -239 3.8 GGTGAAATTAGGCAAA
Cyanothece sp. PCC 7425 Cyan7425_3340 -328 4.2 CGTGATTCGGATCACA
Thermosynechococcus elongatus BP-1 tlr0333 -317 4.8 GGTGATCTGAGTCACA
Position: -91
Score: 4.4
Sequence: TGTGTTCTAGATCACT
Locus tag: Cyan7425_3949
Cyan7425_3949 -91 4.4 TGTGTTCTAGATCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sigF
Ortholog function: RNA polymerase sigma-37
Synechococcus sp. PCC 7002 SYNPCC7002_A1924 -223 4.3 TTTGATAAAAATCAAT
Cyanothece sp. PCC 8801 PCC8801_4329 -271 3.7 AGTGACCTAAATTCCG
Cyanothece sp. PCC 7425 Cyan7425_3949 -91 4.4 TGTGTTCTAGATCACT
Trichodesmium erythraeum IMS101 Tery_3916 -118 4.1 TGTGTTTGATATCACA
Thermosynechococcus elongatus BP-1 null -174 4.7 TGTGGTCAAGATCACA
Position: -102
Score: 4.4
Sequence: TGTGATCTCAGTCATG
Locus tag: Cyan7425_5163
Cyan7425_5163 -102 4.4 TGTGATCTCAGTCATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1600
Ortholog function: Conserved hypothetical protein
Cyanothece sp. PCC 7425 Cyan7425_5163 -102 4.4 TGTGATCTCAGTCATG
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