Propagation of NtcA regulog to Cyanothece sp. PCC 7425

Reference regulog properties
Source regulog:	NtcA - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Cyanothece sp. PCC 7425
Orthologous TF(s)	Cyan7425_0755
Regulated genes	25

Built upon 228 sites [see more]

Predicted regulatory interactions in *Cyanothece sp. PCC 7425*
	Locus tag	Position	Score	Sequence
Position: -137 Score: 4.2 Sequence: CGTAACTTATGTAACA Position: -128 Score: 4.3 Sequence: TGTAACATTTGTTATT Position: -71 Score: 4.1 Sequence: AGTATTGGTGGATACA Locus tag: Cyan7425_0729
	Cyan7425_0729	-137	4.2	CGTAACTTATGTAACA
		-128	4.3	TGTAACATTTGTTATT
		-71	4.1	AGTATTGGTGGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0076
Ortholog function: hypothetical protein
Cyanothece sp. PCC 7425	Cyan7425_0729	-128	4.3	TGTAACATTTGTTATT
		-71	4.1	AGTATTGGTGGATACA
Nostoc sp. PCC 7120	asr0064	-107	3.7	CGTATAGCAAAATACA
Trichodesmium erythraeum IMS101	Tery_2891	-191	4.1	TGTAATTTAGACAACA
		-110	4.6	TGTAACTATATATACT
Thermosynechococcus elongatus BP-1	tsr2448	-63	4.1	AGTATTGGATATTACA

Position: -33 Score: 5.2 Sequence: TGTATCATAAGCTACA Locus tag: Cyan7425_0732
	Cyan7425_0732	-33	5.2	TGTATCATAAGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2101
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002	SYNPCC7002_A2101	67	5	TGTATCATtaaATACA
Cyanothece sp. PCC 7425	Cyan7425_0732	-33	5.2	TGTATCATAAGCTACA
Cyanothece sp. PCC 7425	Cyan7425_0732	-33	5.2	TGTATCATAAGCTACA
Microcystis aeruginosa NIES-843	MAE_14840	-38	4.9	TGTAAATTTAGATACA
Microcystis aeruginosa NIES-843	MAE_14840	-38	4.9	TGTAAATTTAGATACA

Position: -173 Score: 4.8 Sequence: TGTATCCGATGATACA Position: 5 Score: 3.7 Sequence: CGTTACTAAAGATACG Locus tag: Cyan7425_0755
	Cyan7425_0755	-173	4.8	TGTATCCGATGATACA
		5	3.7	CGTTACTAAAGATACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcA
Ortholog function: Global nitrogen transcription regulator, Crp family
Synechococcus sp. PCC 7002	SYNPCC7002_A1675	-177	3.9	TGAAGCAAAAAGTACA
Cyanothece sp. PCC 7425	Cyan7425_0755	-173	4.8	TGTATCCGATGATACA
Nostoc sp. PCC 7120	alr4392	-151	3.7	GGTATCATTATGAACA
		-111	3.7	AGTATAGGAAAGTACA
Synechococcus elongatus PCC 7942	Synpcc7942_0127	-157	4.7	AGTAGCAGTTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_1799	-181	4.7	TGTAGCTCCTGCTACA
Gloeobacter violaceus PCC 7421	gvip454	-77	3.9	AGTAGTCCCTAATACA

Position: -228 Score: 4.4 Sequence: TGTATAACGTGATACA Locus tag: Cyan7425_0782
	Cyan7425_0782	-228	4.4	TGTATAACGTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Cyanothece sp. PCC 7425	Cyan7425_0782	-228	4.4	TGTATAACGTGATACA

Position: -38 Score: 3.7 Sequence: AGTAGTTTAATAAACT Locus tag: Cyan7425_0833
	Cyan7425_0833	-38	3.7	AGTAGTTTAATAAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2395
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002	SYNPCC7002_A2395	-200	4.5	TGTTACTTAAATTACA
		-92	4.5	TGTAGTAGACGTTACA
Cyanothece sp. ATCC 51142	cce_2729	-148	4	TGTAACATATGATAAC
		-87	4.6	TGTAATATTGATTACA
Cyanothece sp. PCC 8801	PCC8801_2066	-53	4.8	TGTAATATTAATTACA
Cyanothece sp. PCC 7425	Cyan7425_0833	-38	3.7	AGTAGTTTAATAAACT
Microcystis aeruginosa NIES-843	MAE_38700	-87	4.2	TGTAATCATCTTTACA
Nostoc sp. PCC 7120	alr4308	-64	3.9	GGTAGTCGGAGTTACA
Trichodesmium erythraeum IMS101	Tery_0672	-94	4.3	AGTATTCAAAATTACA
Synechococcus sp. JA-3-3Ab	CYA_0570	-139	3.9	GGTAAGATAAAATACA
		-81	4.2	CGTATCAAAGGCTACT
Thermosynechococcus elongatus BP-1	tlr1468	-85	4.3	TGTAGTTGAGTTTACA

Position: -82 Score: 4.1 Sequence: AGTAGCTAGAGTTACG Locus tag: Cyan7425_0851
	Cyan7425_0851	-82	4.1	AGTAGCTAGAGTTACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrrA
Ortholog function: Transcriptional regulator, OmpR family
Synechococcus sp. PCC 7002	SYNPCC7002_A0496	-75	4.1	CGTAACCACGGTTACA
Synechocystis sp. PCC 6803	sll1330	-75	4.6	GGTAACTGTTGTTACA
Cyanothece sp. ATCC 51142	cce_1808	-76	4.3	CGTAGCCGATGTTACA
Cyanothece sp. PCC 8801	PCC8801_3375	-76	4.5	CGTAGCAGATGTTACA
Cyanothece sp. PCC 7425	Cyan7425_0851	-82	4.1	AGTAGCTAGAGTTACG
Nostoc sp. PCC 7120	all4312	-75	4.5	AGTAACAAAGACTACA
Trichodesmium erythraeum IMS101	Tery_0675	-89	4.7	AGTAGCTTCTGTTACA
Thermosynechococcus elongatus BP-1	tlr1330	-138	4	AGTATTATTCGTTACG

Position: -158 Score: 4.7 Sequence: GGTATCATATAATACA Locus tag: Cyan7425_1393
	Cyan7425_1393	-158	4.7	GGTATCATATAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gifB
Ortholog function: Glutamine synthetase inactivating factor IF17
Cyanothece sp. PCC 7425	Cyan7425_1393	-158	4.7	GGTATCATATAATACA
Thermosynechococcus elongatus BP-1	null	-175	4.4	TGTTAAATTAGATACA
Thermosynechococcus elongatus BP-1	null	-146	4.4	TGTTAAATTAGATACA

Position: -78 Score: 4.6 Sequence: TGTATCACTATCTACA Locus tag: Cyan7425_1599
	Cyan7425_1599	-78	4.6	TGTATCACTATCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: Nitrogen assimilation transcriptional activator, LysR family
Synechococcus sp. PCC 7002	SYNPCC7002_A1632	-87	3.9	TGTAACATccGgaACA
Cyanothece sp. ATCC 51142	cce_0198	-73	4.2	AGTATCAATTTCTACG
Cyanothece sp. PCC 8801	PCC8801_2329	-80	4.7	TGTATCAAATTCTACT
Cyanothece sp. PCC 7425	Cyan7425_1599	-78	4.6	TGTATCACTATCTACA
Microcystis aeruginosa NIES-843	MAE_09380	-80	4.1	gGTAgCAatTtcTACc
Nostoc sp. PCC 7120	all0602	-80	4.5	TGTAACAAAATCTACC
		-21	4.7	TGTAATTAAGGCTACA
Trichodesmium erythraeum IMS101	Tery_4333	-27	4	TGTATAAAATAACACA
Synechococcus elongatus PCC 7942	Synpcc7942_1242	-153	4.3	AGTAATCATTGATACT
		-82	4.9	AGTAGCAATTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_0984	-89	4.2	TGTAACGGTGTTTACA
Gloeobacter violaceus PCC 7421	gvip213	-46	4	CGTAACCCCAGATACA
Thermosynechococcus elongatus BP-1	null	-122	3.9	TGTATCAATCAACACA

Position: -281 Score: 4.9 Sequence: TGTATCATGAGTTACA Locus tag: Cyan7425_1838
	Cyan7425_1838	-281	4.9	TGTATCATGAGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcF
Ortholog function: phycobilisome core component
Cyanothece sp. ATCC 51142	cce_1944	-177	3.8	TGTGATAAGAAATACA
Cyanothece sp. PCC 8801	PCC8801_0807	-251	4	TGTATACCATGATACG
Cyanothece sp. PCC 7425	Cyan7425_1838	-281	4.9	TGTATCATGAGTTACA
Nostoc sp. PCC 7120	all2327	-233	4.8	TGTAGTCTTTGTTACA
Synechococcus elongatus PCC 7942	Synpcc7942_2158	-214	4.8	TGTAACAGCTGATACA

Position: -221 Score: 4.9 Sequence: TGTAACTCATGATACA Locus tag: Cyan7425_1839
	Cyan7425_1839	-221	4.9	TGTAACTCATGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002	SYNPCC7002_A1630	-125	3.5	TGTgACccAgacTACA
Synechocystis sp. PCC 6803	slr1756	-98	4.3	GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142	cce_4432	-89	4.5	AGTATCCAATTATACA
		-30	4	TGTATATATTGAAACC
Cyanothece sp. PCC 8801	PCC8801_0808	-92	4	CGTATCATGGTATACA
Cyanothece sp. PCC 7425	Cyan7425_1839	-221	4.9	TGTAACTCATGATACA
Microcystis aeruginosa NIES-843	MAE_19270	-92	4.7	TGTATCgaAaaATACA
Nostoc sp. PCC 7120	alr2328	-142	4.8	TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101	Tery_3834	-250	4	CGTAACACCCGATACA
Synechococcus elongatus PCC 7942	Synpcc7942_2156	-194	4.8	TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313	PMT0601	-79	4.2	GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_1363	-138	4.3	CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421	gvip146	-116	4	CGTATCTCAGACTACA

Position: -148 Score: 3.7 Sequence: TGTATAATAGATCACA Locus tag: Cyan7425_2260
	Cyan7425_2260	-148	3.7	TGTATAATAGATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, substrate-binding protein
Synechococcus sp. PCC 7002	SYNPCC7002_A0398	-127	4.1	TGTATCAAGTGTCACA
Synechocystis sp. PCC 6803	slr0447	-211	4.5	GGTATCCTATGCTACA
Cyanothece sp. PCC 7425	Cyan7425_2260	-148	3.7	TGTATAATAGATCACA
Microcystis aeruginosa NIES-843	MAE_06220	-170	4.7	AGTAGCAAAAATTACA
		-140	4.6	AGTAGCGAAAGTTACA
Nostoc sp. PCC 7120	all1951	-116	4.3	AGTATCAAAAATAACA
Trichodesmium erythraeum IMS101	Tery_0130	-390	3.8	AGTTACAAAAAAAACA
Synechococcus sp. JA-3-3Ab	CYA_1924	-272	3.7	GGTATCCCGCGATACA
Thermosynechococcus elongatus BP-1	tlr1120	-81	4	TGTAGCCTAGCATACA

Position: 14 Score: 4 Sequence: AATATCCAAAGATACA Locus tag: Cyan7425_3421
	Cyan7425_3421	14	4	AATATCCAAAGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbcX
Ortholog function: Predicted RuBisCo chaperone
Nostoc sp. PCC 7120	alr1525	-32	3.6	AGTAAAAAGAGTGACA

Position: -322 Score: 3.4 Sequence: AGTATTCATCGCGACA Locus tag: Cyan7425_3422
	Cyan7425_3422	-322	3.4	AGTATTCATCGCGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbcL
Ortholog function: RuBisCO large subunit (EC 4.1.1.39)
Synechocystis sp. PCC 6803	slr0009	-228	4.3	TGTAATTTAAAAAACA
Nostoc sp. PCC 7120	alr1524	-32	3.6	AGTAAAAAGAGTGACA
Trichodesmium erythraeum IMS101	Tery_4410	-293	3.4	GATAACTATTACTACG

Position: -168 Score: 3.7 Sequence: CTTATTTTTAGATACA Locus tag: Cyan7425_4231
	Cyan7425_4231	-168	3.7	CTTATTTTTAGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: trxA
Ortholog function: Thioredoxin-1
Nostoc sp. PCC 7120	alr0052	17	3.7	AGTTACAGATTCTACT
Gloeobacter violaceus PCC 7421	gll0880	-379	3.6	TGTATCTAGAACTAGC

Position: -120 Score: 3.1 Sequence: TCTAACGTATTCTCCA Locus tag: Cyan7425_4369
	Cyan7425_4369	-120	3.1	TCTAACGTATTCTCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifJ
Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Synechococcus sp. PCC 7002	SYNPCC7002_A1443	-272	4.1	TTTATCATTTTCTACA
Synechocystis sp. PCC 6803	sll0741	-181	3.3	AGAATCAACAAAAACA
Cyanothece sp. ATCC 51142	cce_0953	-52	3.8	TGCAACAAAAATTACC
Cyanothece sp. PCC 8801	PCC8801_3918	-265	3.5	AGTAACCATAATTATT
Cyanothece sp. PCC 7425	Cyan7425_4369	-120	3.1	TCTAACGTATTCTCCA
Nostoc sp. PCC 7120	alr1911	-281	3.2	TGAATTTGATGTAACC

Position: -123 Score: 4.5 Sequence: TGTAACTTAATATACC Locus tag: Cyan7425_4573
	Cyan7425_4573	-123	4.5	TGTAACTTAATATACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002	SYNPCC7002_A1827	-111	4	CGTAGTTAACACTACA
Synechocystis sp. PCC 6803	slr0898	-74	4.7	TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142	cce_1223	-76	4.7	TGTTACATTAGCTACA
Cyanothece sp. PCC 8801	PCC8801_2468	-75	4.6	TGTTACAATTAATACA
Cyanothece sp. PCC 7425	Cyan7425_4573	-123	4.5	TGTAACTTAATATACC
Microcystis aeruginosa NIES-843	MAE_18410	-190	4.1	TGTTACAGACAATACA
Trichodesmium erythraeum IMS101	Tery_1068	-276	3.8	TGTATTTTTATATAGT
		-199	4.1	TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942	Synpcc7942_1240	-220	4.9	TGTAGCAATTGCTACT
		-149	4.3	AGTATCAATGATTACT
		-80	4.4	TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab	CYA_0612	-72	3.9	TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421	gvip212	-146	4	TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1	tlr1349	-82	4.6	AGTAGCAAAATTTACA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NtcA regulog to Cyanothece sp. PCC 7425

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --