Propagation of NtcA regulog to Cyanothece sp. PCC 7425
| Source regulog: | NtcA - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Nitrogen assimilation |
| Effector: | 2-oxoglutarate |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Cyanothece sp. PCC 7425 |
| Orthologous TF(s) | Cyan7425_0755 |
| Regulated genes | 25 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -137
Score: 4.2 Sequence: CGTAACTTATGTAACA
Position: -128
Score: 4.3 Sequence: TGTAACATTTGTTATT
Position: -71
Score: 4.1 Sequence: AGTATTGGTGGATACA
Locus tag: Cyan7425_0729
|
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| Cyan7425_0729 | -137 | 4.2 | CGTAACTTATGTAACA | |
| -128 | 4.3 | TGTAACATTTGTTATT | ||
| -71 | 4.1 | AGTATTGGTGGATACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SYNPCC7002_A0076 | ||||
| Ortholog function: hypothetical protein | ||||
| Cyanothece sp. PCC 7425 | Cyan7425_0729 | -128 | 4.3 | TGTAACATTTGTTATT |
| -71 | 4.1 | AGTATTGGTGGATACA | ||
| Nostoc sp. PCC 7120 | asr0064 | -107 | 3.7 | CGTATAGCAAAATACA |
| Trichodesmium erythraeum IMS101 | Tery_2891 | -191 | 4.1 | TGTAATTTAGACAACA |
| -110 | 4.6 | TGTAACTATATATACT | ||
| Thermosynechococcus elongatus BP-1 | tsr2448 | -63 | 4.1 | AGTATTGGATATTACA |
|
Position: -33
Score: 5.2 Sequence: TGTATCATAAGCTACA
Locus tag: Cyan7425_0732
|
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| Cyan7425_0732 | -33 | 5.2 | TGTATCATAAGCTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SYNPCC7002_A2101 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2101 | 67 | 5 | TGTATCATtaaATACA |
| Cyanothece sp. PCC 7425 | Cyan7425_0732 | -33 | 5.2 | TGTATCATAAGCTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_0732 | -33 | 5.2 | TGTATCATAAGCTACA |
| Microcystis aeruginosa NIES-843 | MAE_14840 | -38 | 4.9 | TGTAAATTTAGATACA |
| Microcystis aeruginosa NIES-843 | MAE_14840 | -38 | 4.9 | TGTAAATTTAGATACA |
|
Position: -173
Score: 4.8 Sequence: TGTATCCGATGATACA
Position: 5
Score: 3.7 Sequence: CGTTACTAAAGATACG
Locus tag: Cyan7425_0755
|
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| Cyan7425_0755 | -173 | 4.8 | TGTATCCGATGATACA | |
| 5 | 3.7 | CGTTACTAAAGATACG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ntcA | ||||
| Ortholog function: Global nitrogen transcription regulator, Crp family | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1675 | -177 | 3.9 | TGAAGCAAAAAGTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_0755 | -173 | 4.8 | TGTATCCGATGATACA |
| Nostoc sp. PCC 7120 | alr4392 | -151 | 3.7 | GGTATCATTATGAACA |
| -111 | 3.7 | AGTATAGGAAAGTACA | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_0127 | -157 | 4.7 | AGTAGCAGTTGCTACA |
| Synechococcus sp. JA-3-3Ab | CYA_1799 | -181 | 4.7 | TGTAGCTCCTGCTACA |
| Gloeobacter violaceus PCC 7421 | gvip454 | -77 | 3.9 | AGTAGTCCCTAATACA |
|
Position: -228
Score: 4.4 Sequence: TGTATAACGTGATACA
Locus tag: Cyan7425_0782
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| Cyan7425_0782 | -228 | 4.4 | TGTATAACGTGATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amt1 | ||||
| Ortholog function: ammonium transporter | ||||
| Cyanothece sp. PCC 7425 | Cyan7425_0782 | -228 | 4.4 | TGTATAACGTGATACA |
|
Position: -38
Score: 3.7 Sequence: AGTAGTTTAATAAACT
Locus tag: Cyan7425_0833
|
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| Cyan7425_0833 | -38 | 3.7 | AGTAGTTTAATAAACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SYNPCC7002_A2395 | ||||
| Ortholog function: hypothetical protein | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2395 | -200 | 4.5 | TGTTACTTAAATTACA |
| -92 | 4.5 | TGTAGTAGACGTTACA | ||
| Cyanothece sp. ATCC 51142 | cce_2729 | -148 | 4 | TGTAACATATGATAAC |
| -87 | 4.6 | TGTAATATTGATTACA | ||
| Cyanothece sp. PCC 8801 | PCC8801_2066 | -53 | 4.8 | TGTAATATTAATTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_0833 | -38 | 3.7 | AGTAGTTTAATAAACT |
| Microcystis aeruginosa NIES-843 | MAE_38700 | -87 | 4.2 | TGTAATCATCTTTACA |
| Nostoc sp. PCC 7120 | alr4308 | -64 | 3.9 | GGTAGTCGGAGTTACA |
| Trichodesmium erythraeum IMS101 | Tery_0672 | -94 | 4.3 | AGTATTCAAAATTACA |
| Synechococcus sp. JA-3-3Ab | CYA_0570 | -139 | 3.9 | GGTAAGATAAAATACA |
| -81 | 4.2 | CGTATCAAAGGCTACT | ||
| Thermosynechococcus elongatus BP-1 | tlr1468 | -85 | 4.3 | TGTAGTTGAGTTTACA |
|
Position: -82
Score: 4.1 Sequence: AGTAGCTAGAGTTACG
Locus tag: Cyan7425_0851
|
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| Cyan7425_0851 | -82 | 4.1 | AGTAGCTAGAGTTACG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrrA | ||||
| Ortholog function: Transcriptional regulator, OmpR family | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0496 | -75 | 4.1 | CGTAACCACGGTTACA |
| Synechocystis sp. PCC 6803 | sll1330 | -75 | 4.6 | GGTAACTGTTGTTACA |
| Cyanothece sp. ATCC 51142 | cce_1808 | -76 | 4.3 | CGTAGCCGATGTTACA |
| Cyanothece sp. PCC 8801 | PCC8801_3375 | -76 | 4.5 | CGTAGCAGATGTTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_0851 | -82 | 4.1 | AGTAGCTAGAGTTACG |
| Nostoc sp. PCC 7120 | all4312 | -75 | 4.5 | AGTAACAAAGACTACA |
| Trichodesmium erythraeum IMS101 | Tery_0675 | -89 | 4.7 | AGTAGCTTCTGTTACA |
| Thermosynechococcus elongatus BP-1 | tlr1330 | -138 | 4 | AGTATTATTCGTTACG |
|
Position: -158
Score: 4.7 Sequence: GGTATCATATAATACA
Locus tag: Cyan7425_1393
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| Cyan7425_1393 | -158 | 4.7 | GGTATCATATAATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gifB | ||||
| Ortholog function: Glutamine synthetase inactivating factor IF17 | ||||
| Cyanothece sp. PCC 7425 | Cyan7425_1393 | -158 | 4.7 | GGTATCATATAATACA |
| Thermosynechococcus elongatus BP-1 | null | -175 | 4.4 | TGTTAAATTAGATACA |
| Thermosynechococcus elongatus BP-1 | null | -146 | 4.4 | TGTTAAATTAGATACA |
|
Position: -78
Score: 4.6 Sequence: TGTATCACTATCTACA
Locus tag: Cyan7425_1599
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| Cyan7425_1599 | -78 | 4.6 | TGTATCACTATCTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ntcB | ||||
| Ortholog function: Nitrogen assimilation transcriptional activator, LysR family | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1632 | -87 | 3.9 | TGTAACATccGgaACA |
| Cyanothece sp. ATCC 51142 | cce_0198 | -73 | 4.2 | AGTATCAATTTCTACG |
| Cyanothece sp. PCC 8801 | PCC8801_2329 | -80 | 4.7 | TGTATCAAATTCTACT |
| Cyanothece sp. PCC 7425 | Cyan7425_1599 | -78 | 4.6 | TGTATCACTATCTACA |
| Microcystis aeruginosa NIES-843 | MAE_09380 | -80 | 4.1 | gGTAgCAatTtcTACc |
| Nostoc sp. PCC 7120 | all0602 | -80 | 4.5 | TGTAACAAAATCTACC |
| -21 | 4.7 | TGTAATTAAGGCTACA | ||
| Trichodesmium erythraeum IMS101 | Tery_4333 | -27 | 4 | TGTATAAAATAACACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1242 | -153 | 4.3 | AGTAATCATTGATACT |
| -82 | 4.9 | AGTAGCAATTGCTACA | ||
| Synechococcus sp. JA-3-3Ab | CYA_0984 | -89 | 4.2 | TGTAACGGTGTTTACA |
| Gloeobacter violaceus PCC 7421 | gvip213 | -46 | 4 | CGTAACCCCAGATACA |
| Thermosynechococcus elongatus BP-1 | null | -122 | 3.9 | TGTATCAATCAACACA |
|
Position: -281
Score: 4.9 Sequence: TGTATCATGAGTTACA
Locus tag: Cyan7425_1838
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| Cyan7425_1838 | -281 | 4.9 | TGTATCATGAGTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: apcF | ||||
| Ortholog function: phycobilisome core component | ||||
| Cyanothece sp. ATCC 51142 | cce_1944 | -177 | 3.8 | TGTGATAAGAAATACA |
| Cyanothece sp. PCC 8801 | PCC8801_0807 | -251 | 4 | TGTATACCATGATACG |
| Cyanothece sp. PCC 7425 | Cyan7425_1838 | -281 | 4.9 | TGTATCATGAGTTACA |
| Nostoc sp. PCC 7120 | all2327 | -233 | 4.8 | TGTAGTCTTTGTTACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2158 | -214 | 4.8 | TGTAACAGCTGATACA |
|
Position: -221
Score: 4.9 Sequence: TGTAACTCATGATACA
Locus tag: Cyan7425_1839
|
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| Cyan7425_1839 | -221 | 4.9 | TGTAACTCATGATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: glutamine synthetase, type I | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1630 | -125 | 3.5 | TGTgACccAgacTACA |
| Synechocystis sp. PCC 6803 | slr1756 | -98 | 4.3 | GGTAGCGAAAAATACA |
| Cyanothece sp. ATCC 51142 | cce_4432 | -89 | 4.5 | AGTATCCAATTATACA |
| -30 | 4 | TGTATATATTGAAACC | ||
| Cyanothece sp. PCC 8801 | PCC8801_0808 | -92 | 4 | CGTATCATGGTATACA |
| Cyanothece sp. PCC 7425 | Cyan7425_1839 | -221 | 4.9 | TGTAACTCATGATACA |
| Microcystis aeruginosa NIES-843 | MAE_19270 | -92 | 4.7 | TGTATCgaAaaATACA |
| Nostoc sp. PCC 7120 | alr2328 | -142 | 4.8 | TGTAACAAAGACTACA |
| Trichodesmium erythraeum IMS101 | Tery_3834 | -250 | 4 | CGTAACACCCGATACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2156 | -194 | 4.8 | TGTATCAgcTGTTACA |
| Prochlorococcus marinus str. MIT 9313 | PMT0601 | -79 | 4.2 | GGTACCTGTTGCTACA |
| Synechococcus sp. JA-3-3Ab | CYA_1363 | -138 | 4.3 | CGTATCAGAAACTACA |
| Gloeobacter violaceus PCC 7421 | gvip146 | -116 | 4 | CGTATCTCAGACTACA |
|
Position: -148
Score: 3.7 Sequence: TGTATAATAGATCACA
Locus tag: Cyan7425_2260
|
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| Cyan7425_2260 | -148 | 3.7 | TGTATAATAGATCACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: urtA | ||||
| Ortholog function: Urea ABC transporter, substrate-binding protein | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0398 | -127 | 4.1 | TGTATCAAGTGTCACA |
| Synechocystis sp. PCC 6803 | slr0447 | -211 | 4.5 | GGTATCCTATGCTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_2260 | -148 | 3.7 | TGTATAATAGATCACA |
| Microcystis aeruginosa NIES-843 | MAE_06220 | -170 | 4.7 | AGTAGCAAAAATTACA |
| -140 | 4.6 | AGTAGCGAAAGTTACA | ||
| Nostoc sp. PCC 7120 | all1951 | -116 | 4.3 | AGTATCAAAAATAACA |
| Trichodesmium erythraeum IMS101 | Tery_0130 | -390 | 3.8 | AGTTACAAAAAAAACA |
| Synechococcus sp. JA-3-3Ab | CYA_1924 | -272 | 3.7 | GGTATCCCGCGATACA |
| Thermosynechococcus elongatus BP-1 | tlr1120 | -81 | 4 | TGTAGCCTAGCATACA |
|
Position: 14
Score: 4 Sequence: AATATCCAAAGATACA
Locus tag: Cyan7425_3421
|
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| Cyan7425_3421 | 14 | 4 | AATATCCAAAGATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rbcX | ||||
| Ortholog function: Predicted RuBisCo chaperone | ||||
| Nostoc sp. PCC 7120 | alr1525 | -32 | 3.6 | AGTAAAAAGAGTGACA |
|
Position: -322
Score: 3.4 Sequence: AGTATTCATCGCGACA
Locus tag: Cyan7425_3422
|
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| Cyan7425_3422 | -322 | 3.4 | AGTATTCATCGCGACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rbcL | ||||
| Ortholog function: RuBisCO large subunit (EC 4.1.1.39) | ||||
| Synechocystis sp. PCC 6803 | slr0009 | -228 | 4.3 | TGTAATTTAAAAAACA |
| Nostoc sp. PCC 7120 | alr1524 | -32 | 3.6 | AGTAAAAAGAGTGACA |
| Trichodesmium erythraeum IMS101 | Tery_4410 | -293 | 3.4 | GATAACTATTACTACG |
|
Position: -168
Score: 3.7 Sequence: CTTATTTTTAGATACA
Locus tag: Cyan7425_4231
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| Cyan7425_4231 | -168 | 3.7 | CTTATTTTTAGATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: trxA | ||||
| Ortholog function: Thioredoxin-1 | ||||
| Nostoc sp. PCC 7120 | alr0052 | 17 | 3.7 | AGTTACAGATTCTACT |
| Gloeobacter violaceus PCC 7421 | gll0880 | -379 | 3.6 | TGTATCTAGAACTAGC |
|
Position: -120
Score: 3.1 Sequence: TCTAACGTATTCTCCA
Locus tag: Cyan7425_4369
|
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| Cyan7425_4369 | -120 | 3.1 | TCTAACGTATTCTCCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nifJ | ||||
| Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1443 | -272 | 4.1 | TTTATCATTTTCTACA |
| Synechocystis sp. PCC 6803 | sll0741 | -181 | 3.3 | AGAATCAACAAAAACA |
| Cyanothece sp. ATCC 51142 | cce_0953 | -52 | 3.8 | TGCAACAAAAATTACC |
| Cyanothece sp. PCC 8801 | PCC8801_3918 | -265 | 3.5 | AGTAACCATAATTATT |
| Cyanothece sp. PCC 7425 | Cyan7425_4369 | -120 | 3.1 | TCTAACGTATTCTCCA |
| Nostoc sp. PCC 7120 | alr1911 | -281 | 3.2 | TGAATTTGATGTAACC |
|
Position: -123
Score: 4.5 Sequence: TGTAACTTAATATACC
Locus tag: Cyan7425_4573
|
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| Cyan7425_4573 | -123 | 4.5 | TGTAACTTAATATACC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirA | ||||
| Ortholog function: Nitrite reductase, ferredoxin dependent | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1827 | -111 | 4 | CGTAGTTAACACTACA |
| Synechocystis sp. PCC 6803 | slr0898 | -74 | 4.7 | TGTAATTTACGTTACA |
| Cyanothece sp. ATCC 51142 | cce_1223 | -76 | 4.7 | TGTTACATTAGCTACA |
| Cyanothece sp. PCC 8801 | PCC8801_2468 | -75 | 4.6 | TGTTACAATTAATACA |
| Cyanothece sp. PCC 7425 | Cyan7425_4573 | -123 | 4.5 | TGTAACTTAATATACC |
| Microcystis aeruginosa NIES-843 | MAE_18410 | -190 | 4.1 | TGTTACAGACAATACA |
| Trichodesmium erythraeum IMS101 | Tery_1068 | -276 | 3.8 | TGTATTTTTATATAGT |
| -199 | 4.1 | TGTTATATAAGCTACG | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_1240 | -220 | 4.9 | TGTAGCAATTGCTACT |
| -149 | 4.3 | AGTATCAATGATTACT | ||
| -80 | 4.4 | TGTAGTTTCTGTTACC | ||
| Synechococcus sp. JA-3-3Ab | CYA_0612 | -72 | 3.9 | TGTAACTGCCAATACC |
| Gloeobacter violaceus PCC 7421 | gvip212 | -146 | 4 | TGTATCTGGGGTTACG |
| Thermosynechococcus elongatus BP-1 | tlr1349 | -82 | 4.6 | AGTAGCAAAATTTACA |