Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Synechococcus sp. JA-3-3Ab

Reference regulog properties
Source regulog: Crp - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process:
Effector: Cyclic 3',5'-AMP
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus sp. JA-3-3Ab
Orthologous TF(s) CYA_1331
Regulated genes 4
Built upon 106 sites [see more]
Predicted regulatory interactions in Synechococcus sp. JA-3-3Ab
Locus tag Position Score Sequence
Position: -32
Score: 3.8
Sequence: ATTGACTAGAGTCATG
Locus tag: CYA_0077
CYA_0077 -32 3.8 ATTGACTAGAGTCATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: murF
Ortholog function: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10)
Synechococcus sp. PCC 7002 SYNPCC7002_A2693 -92 4.1 GGTGACAAATATCACT
Synechocystis sp. PCC 6803 slr1351 -101 5 GGTGATCTAGATCACA
Cyanothece sp. ATCC 51142 cce_4424 -83 5.1 TGTGATCTTGATCACA
Cyanothece sp. PCC 8801 PCC8801_2372 -74 4.8 AGTGATCTGGGTCACA
Synechococcus sp. JA-3-3Ab CYA_0077 -32 3.8 ATTGACTAGAGTCATG
Thermosynechococcus elongatus BP-1 null 3 4.2 ATTGATCTAAAACAAC
Position: -135
Score: 3.6
Sequence: GTTGATACTACTCAAA
Locus tag: CYA_0325
CYA_0325 -135 3.6 GTTGATACTACTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gap2
Ortholog function: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59)
Synechococcus sp. PCC 7002 SYNPCC7002_A0106 -65 3.7 TATGATTGGGGTCATC
Cyanothece sp. PCC 8801 PCC8801_2557 -31 4 ATTGAGCTAAAGCATA
Nostoc sp. PCC 7120 all5062 -56 3.8 TATGATTGGGGTCAAA
-1 4.1 TGTGATTAGAGTCGCA
Trichodesmium erythraeum IMS101 Tery_4030 -410 3.6 TATGATAATTCTCAAG
Position: 5
Score: 3.7
Sequence: CATGTTTAAGATCACG
Locus tag: CYA_2225
CYA_2225 5 3.7 CATGTTTAAGATCACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcC
Ortholog function: Phycobilisome linker polypeptide, allophycocyanin-associated
Cyanothece sp. ATCC 51142 cce_2911 5 4.1 AATGTTTAAAGTCACC
Cyanothece sp. PCC 8801 PCC8801_2788 5 3.9 GATGTTTAAAGTCACC
Microcystis aeruginosa NIES-843 MAE_10240 5 4.1 GATGTTCAAAATCACC
Trichodesmium erythraeum IMS101 Tery_3647 5 4.2 AATGTTTAAGATCACA
Synechococcus sp. JA-3-3Ab CYA_2225 5 3.7 CATGTTTAAGATCACG
Synechococcus sp. WH 8102 SYNW0483 5 3.9 GTTGTTCAAAGTCACC
Thermosynechococcus elongatus BP-1 null -233 3.6 CATGAAAGAAGTCACC
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