Propagation of NtcA regulog to Synechococcus sp. JA-3-3Ab
| Source regulog: | NtcA - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Nitrogen assimilation |
| Effector: | 2-oxoglutarate |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Synechococcus sp. JA-3-3Ab |
| Orthologous TF(s) | CYA_1799 |
| Regulated genes | 15 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -66
Score: 3.6 Sequence: GCTATTATCAATTACA
Locus tag: CYA_0030
|
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| CYA_0030 | -66 | 3.6 | GCTATTATCAATTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fur | ||||
| Ortholog function: Ferric uptake regulator, Fur family | ||||
| Synechococcus sp. JA-3-3Ab | CYA_0030 | -66 | 3.6 | GCTATTATCAATTACA |
|
Position: -253
Score: 4.3 Sequence: TGTAATCTTAACTACT
Position: -139
Score: 3.9 Sequence: GGTAAGATAAAATACA
Position: -81
Score: 4.2 Sequence: CGTATCAAAGGCTACT
Locus tag: CYA_0570
|
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| CYA_0570 | -253 | 4.3 | TGTAATCTTAACTACT | |
| -139 | 3.9 | GGTAAGATAAAATACA | ||
| -81 | 4.2 | CGTATCAAAGGCTACT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SYNPCC7002_A2395 | ||||
| Ortholog function: hypothetical protein | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2395 | -200 | 4.5 | TGTTACTTAAATTACA |
| -92 | 4.5 | TGTAGTAGACGTTACA | ||
| Cyanothece sp. ATCC 51142 | cce_2729 | -148 | 4 | TGTAACATATGATAAC |
| -87 | 4.6 | TGTAATATTGATTACA | ||
| Cyanothece sp. PCC 8801 | PCC8801_2066 | -53 | 4.8 | TGTAATATTAATTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_0833 | -38 | 3.7 | AGTAGTTTAATAAACT |
| Microcystis aeruginosa NIES-843 | MAE_38700 | -87 | 4.2 | TGTAATCATCTTTACA |
| Nostoc sp. PCC 7120 | alr4308 | -64 | 3.9 | GGTAGTCGGAGTTACA |
| Trichodesmium erythraeum IMS101 | Tery_0672 | -94 | 4.3 | AGTATTCAAAATTACA |
| Synechococcus sp. JA-3-3Ab | CYA_0570 | -139 | 3.9 | GGTAAGATAAAATACA |
| -81 | 4.2 | CGTATCAAAGGCTACT | ||
| Thermosynechococcus elongatus BP-1 | tlr1468 | -85 | 4.3 | TGTAGTTGAGTTTACA |
|
Position: -72
Score: 3.9 Sequence: TGTAACTGCCAATACC
Locus tag: CYA_0612
|
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| CYA_0612 | -72 | 3.9 | TGTAACTGCCAATACC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirA | ||||
| Ortholog function: Nitrite reductase, ferredoxin dependent | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1827 | -111 | 4 | CGTAGTTAACACTACA |
| Synechocystis sp. PCC 6803 | slr0898 | -74 | 4.7 | TGTAATTTACGTTACA |
| Cyanothece sp. ATCC 51142 | cce_1223 | -76 | 4.7 | TGTTACATTAGCTACA |
| Cyanothece sp. PCC 8801 | PCC8801_2468 | -75 | 4.6 | TGTTACAATTAATACA |
| Cyanothece sp. PCC 7425 | Cyan7425_4573 | -123 | 4.5 | TGTAACTTAATATACC |
| Microcystis aeruginosa NIES-843 | MAE_18410 | -190 | 4.1 | TGTTACAGACAATACA |
| Trichodesmium erythraeum IMS101 | Tery_1068 | -276 | 3.8 | TGTATTTTTATATAGT |
| -199 | 4.1 | TGTTATATAAGCTACG | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_1240 | -220 | 4.9 | TGTAGCAATTGCTACT |
| -149 | 4.3 | AGTATCAATGATTACT | ||
| -80 | 4.4 | TGTAGTTTCTGTTACC | ||
| Synechococcus sp. JA-3-3Ab | CYA_0612 | -72 | 3.9 | TGTAACTGCCAATACC |
| Gloeobacter violaceus PCC 7421 | gvip212 | -146 | 4 | TGTATCTGGGGTTACG |
| Thermosynechococcus elongatus BP-1 | tlr1349 | -82 | 4.6 | AGTAGCAAAATTTACA |
|
Position: -89
Score: 4.2 Sequence: TGTAACGGTGTTTACA
Locus tag: CYA_0984
|
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| CYA_0984 | -89 | 4.2 | TGTAACGGTGTTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ntcB | ||||
| Ortholog function: Nitrogen assimilation transcriptional activator, LysR family | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1632 | -87 | 3.9 | TGTAACATccGgaACA |
| Cyanothece sp. ATCC 51142 | cce_0198 | -73 | 4.2 | AGTATCAATTTCTACG |
| Cyanothece sp. PCC 8801 | PCC8801_2329 | -80 | 4.7 | TGTATCAAATTCTACT |
| Cyanothece sp. PCC 7425 | Cyan7425_1599 | -78 | 4.6 | TGTATCACTATCTACA |
| Microcystis aeruginosa NIES-843 | MAE_09380 | -80 | 4.1 | gGTAgCAatTtcTACc |
| Nostoc sp. PCC 7120 | all0602 | -80 | 4.5 | TGTAACAAAATCTACC |
| -21 | 4.7 | TGTAATTAAGGCTACA | ||
| Trichodesmium erythraeum IMS101 | Tery_4333 | -27 | 4 | TGTATAAAATAACACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1242 | -153 | 4.3 | AGTAATCATTGATACT |
| -82 | 4.9 | AGTAGCAATTGCTACA | ||
| Synechococcus sp. JA-3-3Ab | CYA_0984 | -89 | 4.2 | TGTAACGGTGTTTACA |
| Gloeobacter violaceus PCC 7421 | gvip213 | -46 | 4 | CGTAACCCCAGATACA |
| Thermosynechococcus elongatus BP-1 | null | -122 | 3.9 | TGTATCAATCAACACA |
|
Position: -138
Score: 4.3 Sequence: CGTATCAGAAACTACA
Locus tag: CYA_1363
|
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| CYA_1363 | -138 | 4.3 | CGTATCAGAAACTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: glutamine synthetase, type I | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1630 | -125 | 3.5 | TGTgACccAgacTACA |
| Synechocystis sp. PCC 6803 | slr1756 | -98 | 4.3 | GGTAGCGAAAAATACA |
| Cyanothece sp. ATCC 51142 | cce_4432 | -89 | 4.5 | AGTATCCAATTATACA |
| -30 | 4 | TGTATATATTGAAACC | ||
| Cyanothece sp. PCC 8801 | PCC8801_0808 | -92 | 4 | CGTATCATGGTATACA |
| Cyanothece sp. PCC 7425 | Cyan7425_1839 | -221 | 4.9 | TGTAACTCATGATACA |
| Microcystis aeruginosa NIES-843 | MAE_19270 | -92 | 4.7 | TGTATCgaAaaATACA |
| Nostoc sp. PCC 7120 | alr2328 | -142 | 4.8 | TGTAACAAAGACTACA |
| Trichodesmium erythraeum IMS101 | Tery_3834 | -250 | 4 | CGTAACACCCGATACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2156 | -194 | 4.8 | TGTATCAgcTGTTACA |
| Prochlorococcus marinus str. MIT 9313 | PMT0601 | -79 | 4.2 | GGTACCTGTTGCTACA |
| Synechococcus sp. JA-3-3Ab | CYA_1363 | -138 | 4.3 | CGTATCAGAAACTACA |
| Gloeobacter violaceus PCC 7421 | gvip146 | -116 | 4 | CGTATCTCAGACTACA |
|
Position: -74
Score: 4.5 Sequence: TGTATCCGTTTTTACA
Locus tag: CYA_1508
|
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| CYA_1508 | -74 | 4.5 | TGTATCCGTTTTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnB | ||||
| Ortholog function: nitrogen regulatory protein P-II | ||||
| Synechocystis sp. PCC 6803 | ssl0707 | -184 | 3.7 | GGTACTGATTTTTACA |
| Nostoc sp. PCC 7120 | all2319 | -214 | 3.8 | AGTTACACAGACTACA |
| Synechococcus elongatus PCC 7942 | Synpcc7942_0321 | -103 | 4.8 | TGTAGCAGTAACTACA |
| Synechococcus sp. JA-3-3Ab | CYA_1508 | -74 | 4.5 | TGTATCCGTTTTTACA |
| Thermosynechococcus elongatus BP-1 | tll0591 | -80 | 5.1 | TGTAGCTATTGCTACA |
|
Position: -181
Score: 4.7 Sequence: TGTAGCTCCTGCTACA
Locus tag: CYA_1799
|
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| CYA_1799 | -181 | 4.7 | TGTAGCTCCTGCTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ntcA | ||||
| Ortholog function: Global nitrogen transcription regulator, Crp family | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1675 | -177 | 3.9 | TGAAGCAAAAAGTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_0755 | -173 | 4.8 | TGTATCCGATGATACA |
| Nostoc sp. PCC 7120 | alr4392 | -151 | 3.7 | GGTATCATTATGAACA |
| -111 | 3.7 | AGTATAGGAAAGTACA | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_0127 | -157 | 4.7 | AGTAGCAGTTGCTACA |
| Synechococcus sp. JA-3-3Ab | CYA_1799 | -181 | 4.7 | TGTAGCTCCTGCTACA |
| Gloeobacter violaceus PCC 7421 | gvip454 | -77 | 3.9 | AGTAGTCCCTAATACA |
|
Position: -272
Score: 3.7 Sequence: GGTATCCCGCGATACA
Locus tag: CYA_1924
|
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| CYA_1924 | -272 | 3.7 | GGTATCCCGCGATACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: urtA | ||||
| Ortholog function: Urea ABC transporter, substrate-binding protein | ||||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0398 | -127 | 4.1 | TGTATCAAGTGTCACA |
| Synechocystis sp. PCC 6803 | slr0447 | -211 | 4.5 | GGTATCCTATGCTACA |
| Cyanothece sp. PCC 7425 | Cyan7425_2260 | -148 | 3.7 | TGTATAATAGATCACA |
| Microcystis aeruginosa NIES-843 | MAE_06220 | -170 | 4.7 | AGTAGCAAAAATTACA |
| -140 | 4.6 | AGTAGCGAAAGTTACA | ||
| Nostoc sp. PCC 7120 | all1951 | -116 | 4.3 | AGTATCAAAAATAACA |
| Trichodesmium erythraeum IMS101 | Tery_0130 | -390 | 3.8 | AGTTACAAAAAAAACA |
| Synechococcus sp. JA-3-3Ab | CYA_1924 | -272 | 3.7 | GGTATCCCGCGATACA |
| Thermosynechococcus elongatus BP-1 | tlr1120 | -81 | 4 | TGTAGCCTAGCATACA |