Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Crp regulog to Synechocystis sp. PCC 6803

Reference regulog properties
Source regulog: Crp - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process:
Effector: Cyclic 3',5'-AMP
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechocystis sp. PCC 6803
Orthologous TF(s) sll1371, sll1924
Regulated genes 17
Built upon 106 sites [see more]
Predicted regulatory interactions in Synechocystis sp. PCC 6803
Locus tag Position Score Sequence
Position: -106
Score: 4.5
Sequence: TGTGACAATAAACACC
Locus tag: sll1924
sll1924 -106 4.5 TGTGACAATAAACACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: cAMP responsive transcription regulator, Fnr-Crp family
Synechocystis sp. PCC 6803 sll1371 -159 4 AGTGAAAAAACTCACT
Synechocystis sp. PCC 6803 sll1924 -106 4.5 TGTGACAATAAACACC
Trichodesmium erythraeum IMS101 Tery_1557 -259 4.2 CATGATCAAAGTCAAG
Position: 27
Score: 3.2
Sequence: AGAGATTTTTGGCAAA
Locus tag: slr1138
slr1138 27 3.2 AGAGATTTTTGGCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxC
Ortholog function: Cytochrome c oxidase subunit 3 (EC 1.9.3.1)
Cyanothece sp. ATCC 51142 cce_1975 -78 3.7 TGTGATAAAAAAGCCA
Nostoc sp. PCC 7120 alr2516 -222 3.1 TCTGGAATAATTCCCC
Position: -162
Score: 5.3
Sequence: TGTGATCTAGATCACA
Locus tag: sll1268
sll1268 -162 5.3 TGTGATCTAGATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1600
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A1600 -141 4.5 CGTGATCAGAGTCACG
Synechocystis sp. PCC 6803 slr0442 -203 4.9 TGTGATCCAGATCACA
Synechocystis sp. PCC 6803 sll1268 -162 5.3 TGTGATCTAGATCACA
Microcystis aeruginosa NIES-843 MAE_53490 -130 4.8 TGTGATTTTACTCACA
Position: -77
Score: 4.4
Sequence: CGTGATAGTAATCACC
Locus tag: sll1708
sll1708 -77 4.4 CGTGATAGTAATCACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sll1708
Ortholog function: Two component transcriptional regulator, LuxR family
Synechocystis sp. PCC 6803 sll1708 -77 4.4 CGTGATAGTAATCACC
Cyanothece sp. ATCC 51142 cce_2365 -1 3.8 GGTGAATTTAAGCATG
Position: -188
Score: 3.8
Sequence: AATGATAAACATCACT
Locus tag: sll1608
sll1608 -188 3.8 AATGATAAACATCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2113
Ortholog function: Transglutaminase-like protein
Synechocystis sp. PCC 6803 sll1608 -188 3.8 AATGATAAACATCACT
Cyanothece sp. PCC 8801 PCC8801_3693 -115 4.2 ATTGATATTAATCAAT
Cyanothece sp. PCC 7425 Cyan7425_1077 -107 4.8 AGTGATCAAAGTCATG
Trichodesmium erythraeum IMS101 Tery_0156 -50 4.7 AATGATCTTAATCAAA
Position: -1
Score: 3.8
Sequence: TATGACAATTAGCACC
Locus tag: slr1503
slr1503 -1 3.8 TATGACAATTAGCACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: slr1503
Ortholog function: Predicted aldo/keto reductase
Synechocystis sp. PCC 6803 slr1503 -1 3.8 TATGACAATTAGCACC
Cyanothece sp. ATCC 51142 cce_2512 -72 4.1 TGTGAGTTTTGTCACG
Cyanothece sp. PCC 8801 PCC8801_0019 -35 4.6 TGTGAGCTAAATCACT
Trichodesmium erythraeum IMS101 Tery_2155 -99 3.9 CATGGTTTTAATCATA
Position: -101
Score: 5
Sequence: GGTGATCTAGATCACA
Locus tag: slr1351
slr1351 -101 5 GGTGATCTAGATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: murF
Ortholog function: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10)
Synechococcus sp. PCC 7002 SYNPCC7002_A2693 -92 4.1 GGTGACAAATATCACT
Synechocystis sp. PCC 6803 slr1351 -101 5 GGTGATCTAGATCACA
Cyanothece sp. ATCC 51142 cce_4424 -83 5.1 TGTGATCTTGATCACA
Cyanothece sp. PCC 8801 PCC8801_2372 -74 4.8 AGTGATCTGGGTCACA
Synechococcus sp. JA-3-3Ab CYA_0077 -32 3.8 ATTGACTAGAGTCATG
Thermosynechococcus elongatus BP-1 null 3 4.2 ATTGATCTAAAACAAC
Position: -159
Score: 4
Sequence: AGTGAAAAAACTCACT
Locus tag: sll1371
sll1371 -159 4 AGTGAAAAAACTCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: cAMP responsive transcription regulator, Fnr-Crp family
Synechocystis sp. PCC 6803 sll1371 -159 4 AGTGAAAAAACTCACT
Synechocystis sp. PCC 6803 sll1924 -106 4.5 TGTGACAATAAACACC
Trichodesmium erythraeum IMS101 Tery_1557 -259 4.2 CATGATCAAAGTCAAG
Position: -203
Score: 4.9
Sequence: TGTGATCCAGATCACA
Locus tag: slr0442
slr0442 -203 4.9 TGTGATCCAGATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1600
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A1600 -141 4.5 CGTGATCAGAGTCACG
Synechocystis sp. PCC 6803 slr0442 -203 4.9 TGTGATCCAGATCACA
Synechocystis sp. PCC 6803 sll1268 -162 5.3 TGTGATCTAGATCACA
Microcystis aeruginosa NIES-843 MAE_53490 -130 4.8 TGTGATTTTACTCACA
Position: -56
Score: 4.1
Sequence: TTTGATCAAAGTCCTA
Locus tag: slr0013
slr0013 -56 4.1 TTTGATCAAAGTCCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0687
Ortholog function: Conserved hypothetical protein
Synechocystis sp. PCC 6803 slr0013 -56 4.1 TTTGATCAAAGTCCTA
Cyanothece sp. ATCC 51142 cce_3288 -137 3.8 TTTGACTTAAATAACC
Cyanothece sp. PCC 8801 PCC8801_0091 -153 3.8 TTTGATCTCGATCATT
Prochlorococcus marinus str. MIT 9313 PMT0719 17 3.7 TTTGAAACAATTCACC
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