Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtcB regulog to Synechocystis sp. PCC 6803

Reference regulog properties
Source regulog: NtcB - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Nitrite
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechocystis sp. PCC 6803
Orthologous TF(s) slr0395
Regulated genes 4
Built upon 44 sites [see more]
Predicted regulatory interactions in Synechocystis sp. PCC 6803
Locus tag Position Score Sequence
Position: 0
Score: 4
Sequence: ATGCAAACAATGAAT
Locus tag: sll1453
sll1453 0 4 ATGCAAACAATGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrtD
Ortholog function: nitrate/nitrite ABC transport system, ATP-binding protein
Synechocystis sp. PCC 6803 sll1453 -125 4.9 ATGCAGTAATCGCAT
Cyanothece sp. PCC 8801 PCC8801_4393 -235 4.5 ATGCAAAAACCACAT
-213 4 ATGCTTTTATTGCAA
Microcystis aeruginosa NIES-843 MAE_14770 -395 3.7 ATGCTTTTATGACAT
Position: -125
Score: 4.9
Sequence: ATGCAGTAATCGCAT
Locus tag: sll1450
sll1450 -125 4.9 ATGCAGTAATCGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrtA
Ortholog function: nitrate/nitrite ABC transport system, substrate-binding protein
Synechocystis sp. PCC 6803 sll1450 -125 4.9 ATGCAGTAATCGCAT
Cyanothece sp. PCC 8801 PCC8801_4396 -235 4.5 ATGCAAAAACCACAT
-213 4 ATGCTTTTATTGCAA
Cyanothece sp. PCC 7425 Cyan7425_4572 -174 4.5 ATGCAGGTTTGGCAT
Microcystis aeruginosa NIES-843 MAE_14800 -395 3.7 ATGCTTTTATGACAT
Nostoc sp. PCC 7120 alr0608 -562 4.8 ATGCAGAAAACGCAT
Nostoc sp. PCC 7120 all3333 -135 4.4 ATGCAATTTTTACAA
Synechococcus elongatus PCC 7942 Synpcc7942_1239 -109 4.3 TTGCAGAACATGCAT
Synechococcus sp. JA-3-3Ab CYA_0613 -101 4.4 ATGACAAAACTGCAT
Thermosynechococcus elongatus BP-1 tlr1350 -111 4.4 ATACAAAAACTGTAT
Position: -187
Score: 4
Sequence: ATGGATTCTTTTCAT
Locus tag: slr0395
slr0395 -187 4 ATGGATTCTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: nitrogen assimilation transcriptional activator NtcB
Synechococcus sp. PCC 7002 SYNPCC7002_A1632 -56 4.4 ATGCAGTAAACTCAT
Synechocystis sp. PCC 6803 slr0395 -187 4 ATGGATTCTTTTCAT
Cyanothece sp. ATCC 51142 cce_0198 -125 3.6 AGACAAAAACTCCAT
Nostoc sp. PCC 7120 all0602 -31 3.9 ATGCCGTAAATGTAA
Trichodesmium erythraeum IMS101 Tery_4333 -87 4.1 ATGAAATATTTATAT
Synechococcus elongatus PCC 7942 Synpcc7942_1242 -192 4.3 ATGCATGTTCTGCAA
Thermosynechococcus elongatus BP-1 null -99 4.2 ATGGGAAAGTTGCAT
Position: -103
Score: 4.8
Sequence: ATGCGTAAACTGCAT
Locus tag: slr0898
slr0898 -103 4.8 ATGCGTAAACTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: ferredoxin--nitrite reductase
Synechococcus sp. PCC 7002 SYNPCC7002_A1827 -162 4 ATGCGGCGATCGCAT
Synechocystis sp. PCC 6803 slr0898 -103 4.8 ATGCGTAAACTGCAT
Cyanothece sp. ATCC 51142 cce_1223 -127 4.7 ATGCAAAAAATCCAT
-105 4.1 ATGCAAAAAACGGAT
Cyanothece sp. PCC 8801 PCC8801_2468 -126 3.9 ATGCAAAATAATCAT
Cyanothece sp. PCC 7425 Cyan7425_4573 -174 4.5 ATGCAGGTTTGGCAT
Microcystis aeruginosa NIES-843 MAE_18410 -241 4.6 ATGCACTTACTGCAT
Nostoc sp. PCC 7120 alr0607 -562 4.8 ATGCAGAAAACGCAT
Trichodesmium erythraeum IMS101 Tery_1068 -250 4.7 ATGTAATAAATGCAT
Synechococcus elongatus PCC 7942 Synpcc7942_1240 -109 4.3 TTGCAGAACATGCAT
Synechococcus sp. JA-3-3Ab CYA_0612 -101 4.4 ATGACAAAACTGCAT
Thermosynechococcus elongatus BP-1 tlr1349 -111 4.4 ATACAAAAACTGTAT
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