Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Crp regulog to Nostoc punctiforme

Reference regulog properties
Source regulog: Crp - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process:
Effector: Cyclic 3',5'-AMP
Phylum: Cyanobacteria
Propagated regulon:
Target genome Nostoc punctiforme
Orthologous TF(s) Npun_F3492
Regulated genes 20
Built upon 106 sites [see more]
Predicted regulatory interactions in Nostoc punctiforme
Locus tag Position Score Sequence
Position: -90
Score: 3.4
Sequence: AATGACAAATGACAAC
Position: -83
Score: 3.2
Sequence: AATGACAACGGACAAA
Position: -69
Score: 3.2
Sequence: AATGACAACGGACAAA
Position: -33
Score: 3.5
Sequence: AATGACAAATGACAAA
Position: -26
Score: 3
Sequence: AATGACAAACGACAAG
Locus tag: Npun_F0337
Npun_F0337 -90 3.4 AATGACAAATGACAAC
-83 3.2 AATGACAACGGACAAA
-69 3.2 AATGACAACGGACAAA
-33 3.5 AATGACAAATGACAAA
-26 3 AATGACAAACGACAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxA
Ortholog function: Cytochrome c oxidase subunit 1 (EC 1.9.3.1)
Nostoc sp. PCC 7120 alr2515 -222 3.1 TCTGGAATAATTCCCC
Trichodesmium erythraeum IMS101 Tery_1778 -193 4 TGTAACCTAAAACAAA
-93 3.9 TCTGAGAAATATCAAA
Position: -284
Score: 3.5
Sequence: TCTGAAACAAAACAAA
Locus tag: Npun_R0420
Npun_R0420 -284 3.5 TCTGAAACAAAACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifB
Ortholog function: FeMo nitrogenase cofactor biosynthesis protein
Cyanothece sp. ATCC 51142 cce_0554 -123 4 GGTGGTATAAATGACA
Cyanothece sp. PCC 7425 Cyan7425_2361 -40 3.9 ACTGTTATAAAGCACC
Nostoc sp. PCC 7120 all1517 -299 3.1 ACTGCTATAAATCTTA
Trichodesmium erythraeum IMS101 Tery_4133 -356 3.7 TATGACTTATAGCATG
Position: -56
Score: 3.7
Sequence: TATGATTGGGGTCAAC
Locus tag: Npun_R0444
Npun_R0444 -56 3.7 TATGATTGGGGTCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gap2
Ortholog function: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59)
Synechococcus sp. PCC 7002 SYNPCC7002_A0106 -65 3.7 TATGATTGGGGTCATC
Cyanothece sp. PCC 8801 PCC8801_2557 -31 4 ATTGAGCTAAAGCATA
Nostoc sp. PCC 7120 all5062 -56 3.8 TATGATTGGGGTCAAA
-1 4.1 TGTGATTAGAGTCGCA
Trichodesmium erythraeum IMS101 Tery_4030 -410 3.6 TATGATAATTCTCAAG
Position: -47
Score: 3.7
Sequence: AATGACAAAGGACAAA
Locus tag: Npun_F0484
Npun_F0484 -47 3.7 AATGACAAAGGACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sll1708
Ortholog function: Two component transcriptional regulator, LuxR family
Synechocystis sp. PCC 6803 sll1708 -77 4.4 CGTGATAGTAATCACC
Cyanothece sp. ATCC 51142 cce_2365 -1 3.8 GGTGAATTTAAGCATG
Position: -61
Score: 3.7
Sequence: TGTTGTCAAAGTCAAA
Locus tag: Npun_R4821
Npun_R4821 -61 3.7 TGTTGTCAAAGTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufR
Ortholog function: Iron-sulfur cluster biogenesis regulator, DeoR family
Cyanothece sp. ATCC 51142 cce_0683 -95 3.9 TGTTGTCAAAGTCACA
Cyanothece sp. PCC 8801 PCC8801_0414 -41 3.8 GTTGATTTAAGTCCTA
Microcystis aeruginosa NIES-843 MAE_23100 -128 3.7 TGTTGTCAAAGTCACG
Nostoc sp. PCC 7120 all2491 -42 3.7 TGTTGTCAAAGTCAAA
Prochlorococcus marinus str. MIT 9313 PMT1607 -71 3.9 CCTGATCTAAGGCAAC
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