Propagation of NtcA regulog to Nostoc punctiforme

Reference regulog properties
Source regulog:	NtcA - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Nostoc punctiforme
Orthologous TF(s)	Npun_F5511
Regulated genes	29

Built upon 228 sites [see more]

Predicted regulatory interactions in *Nostoc punctiforme*
	Locus tag	Position	Score	Sequence
Position: -1 Score: 3.6 Sequence: TATGACTATAGCTACA Locus tag: Npun_F0338
	Npun_F0338	-1	3.6	TATGACTATAGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxC
Ortholog function: Cytochrome c oxidase subunit 3 (EC 1.9.3.1)
Cyanothece sp. PCC 8801	PCC8801_0569	-148	3.8	TTTATTATTTGTTACC
Microcystis aeruginosa NIES-843	MAE_22950	-141	3.8	AGTTATTTTAAATACT
Nostoc sp. PCC 7120	alr2516	-291	3.5	AGAAGTAGAAGCTACT

Position: -106 Score: 3.7 Sequence: CGTATAGCAAACTACA Position: 21 Score: 4.1 Sequence: TCTATCAATTACTACT Locus tag: Npun_F0704
	Npun_F0704	-106	3.7	CGTATAGCAAACTACA
		21	4.1	TCTATCAATTACTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0076
Ortholog function: hypothetical protein
Cyanothece sp. PCC 7425	Cyan7425_0729	-128	4.3	TGTAACATTTGTTATT
		-71	4.1	AGTATTGGTGGATACA
Nostoc sp. PCC 7120	asr0064	-107	3.7	CGTATAGCAAAATACA
Trichodesmium erythraeum IMS101	Tery_2891	-191	4.1	TGTAATTTAGACAACA
		-110	4.6	TGTAACTATATATACT
Thermosynechococcus elongatus BP-1	tsr2448	-63	4.1	AGTATTGGATATTACA

Position: -298 Score: 4 Sequence: CGTAACAATTTATACG Locus tag: Npun_R1528
	Npun_R1528	-298	4	CGTAACAATTTATACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002	SYNPCC7002_A1827	-111	4	CGTAGTTAACACTACA
Synechocystis sp. PCC 6803	slr0898	-74	4.7	TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142	cce_1223	-76	4.7	TGTTACATTAGCTACA
Cyanothece sp. PCC 8801	PCC8801_2468	-75	4.6	TGTTACAATTAATACA
Cyanothece sp. PCC 7425	Cyan7425_4573	-123	4.5	TGTAACTTAATATACC
Microcystis aeruginosa NIES-843	MAE_18410	-190	4.1	TGTTACAGACAATACA
Trichodesmium erythraeum IMS101	Tery_1068	-276	3.8	TGTATTTTTATATAGT
		-199	4.1	TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942	Synpcc7942_1240	-220	4.9	TGTAGCAATTGCTACT
		-149	4.3	AGTATCAATGATTACT
		-80	4.4	TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab	CYA_0612	-72	3.9	TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421	gvip212	-146	4	TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1	tlr1349	-82	4.6	AGTAGCAAAATTTACA

Position: -79 Score: 4.4 Sequence: TGTAACTAACTATACT Position: -21 Score: 4.5 Sequence: TGTAATTCAGGCTACA Locus tag: Npun_F1534
	Npun_F1534	-79	4.4	TGTAACTAACTATACT
		-21	4.5	TGTAATTCAGGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: Nitrogen assimilation transcriptional activator, LysR family
Synechococcus sp. PCC 7002	SYNPCC7002_A1632	-87	3.9	TGTAACATccGgaACA
Cyanothece sp. ATCC 51142	cce_0198	-73	4.2	AGTATCAATTTCTACG
Cyanothece sp. PCC 8801	PCC8801_2329	-80	4.7	TGTATCAAATTCTACT
Cyanothece sp. PCC 7425	Cyan7425_1599	-78	4.6	TGTATCACTATCTACA
Microcystis aeruginosa NIES-843	MAE_09380	-80	4.1	gGTAgCAatTtcTACc
Nostoc sp. PCC 7120	all0602	-80	4.5	TGTAACAAAATCTACC
		-21	4.7	TGTAATTAAGGCTACA
Trichodesmium erythraeum IMS101	Tery_4333	-27	4	TGTATAAAATAACACA
Synechococcus elongatus PCC 7942	Synpcc7942_1242	-153	4.3	AGTAATCATTGATACT
		-82	4.9	AGTAGCAATTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_0984	-89	4.2	TGTAACGGTGTTTACA
Gloeobacter violaceus PCC 7421	gvip213	-46	4	CGTAACCCCAGATACA
Thermosynechococcus elongatus BP-1	null	-122	3.9	TGTATCAATCAACACA

Position: -74 Score: 4.7 Sequence: TGTAGTTAAGGATACA Locus tag: Npun_R3288
	Npun_R3288	-74	4.7	TGTAGTTAAGGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Nostoc sp. PCC 7120	alr0992	-50	4.7	TGTAACTAAGTATACA

Position: -51 Score: 4.9 Sequence: TGTAGCTGTTGCTACA Locus tag: Npun_F3461
	Npun_F3461	-51	4.9	TGTAGCTGTTGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0264
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002	SYNPCC7002_A0264	-29	5	TGTATCAAATACTACA
Microcystis aeruginosa NIES-843	MAE_18580	-68	4.8	TGTATCTTTAGCTACT
Nostoc sp. PCC 7120	all1327	-52	4.3	CGTAGTGTATGTTACA

Position: -89 Score: 4.2 Sequence: GGTATTCACAGTTACA Locus tag: Npun_F3903
	Npun_F3903	-89	4.2	GGTATTCACAGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2395
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002	SYNPCC7002_A2395	-200	4.5	TGTTACTTAAATTACA
		-92	4.5	TGTAGTAGACGTTACA
Cyanothece sp. ATCC 51142	cce_2729	-148	4	TGTAACATATGATAAC
		-87	4.6	TGTAATATTGATTACA
Cyanothece sp. PCC 8801	PCC8801_2066	-53	4.8	TGTAATATTAATTACA
Cyanothece sp. PCC 7425	Cyan7425_0833	-38	3.7	AGTAGTTTAATAAACT
Microcystis aeruginosa NIES-843	MAE_38700	-87	4.2	TGTAATCATCTTTACA
Nostoc sp. PCC 7120	alr4308	-64	3.9	GGTAGTCGGAGTTACA
Trichodesmium erythraeum IMS101	Tery_0672	-94	4.3	AGTATTCAAAATTACA
Synechococcus sp. JA-3-3Ab	CYA_0570	-139	3.9	GGTAAGATAAAATACA
		-81	4.2	CGTATCAAAGGCTACT
Thermosynechococcus elongatus BP-1	tlr1468	-85	4.3	TGTAGTTGAGTTTACA

Position: -264 Score: 3.9 Sequence: TATAGATATTTCTACA Position: -76 Score: 4.7 Sequence: AGTAACAAAGGCTACA Locus tag: Npun_R3907
	Npun_R3907	-264	3.9	TATAGATATTTCTACA
		-76	4.7	AGTAACAAAGGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrrA
Ortholog function: Transcriptional regulator, OmpR family
Synechococcus sp. PCC 7002	SYNPCC7002_A0496	-75	4.1	CGTAACCACGGTTACA
Synechocystis sp. PCC 6803	sll1330	-75	4.6	GGTAACTGTTGTTACA
Cyanothece sp. ATCC 51142	cce_1808	-76	4.3	CGTAGCCGATGTTACA
Cyanothece sp. PCC 8801	PCC8801_3375	-76	4.5	CGTAGCAGATGTTACA
Cyanothece sp. PCC 7425	Cyan7425_0851	-82	4.1	AGTAGCTAGAGTTACG
Nostoc sp. PCC 7120	all4312	-75	4.5	AGTAACAAAGACTACA
Trichodesmium erythraeum IMS101	Tery_0675	-89	4.7	AGTAGCTTCTGTTACA
Thermosynechococcus elongatus BP-1	tlr1330	-138	4	AGTATTATTCGTTACG

Position: -104 Score: 3.1 Sequence: AGTATTTATTTAAAGT Locus tag: Npun_R4132
	Npun_R4132	-104	3.1	AGTATTTATTTAAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifJ
Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Synechococcus sp. PCC 7002	SYNPCC7002_A1443	-272	4.1	TTTATCATTTTCTACA
Synechocystis sp. PCC 6803	sll0741	-181	3.3	AGAATCAACAAAAACA
Cyanothece sp. ATCC 51142	cce_0953	-52	3.8	TGCAACAAAAATTACC
Cyanothece sp. PCC 8801	PCC8801_3918	-265	3.5	AGTAACCATAATTATT
Cyanothece sp. PCC 7425	Cyan7425_4369	-120	3.1	TCTAACGTATTCTCCA
Nostoc sp. PCC 7120	alr1911	-281	3.2	TGAATTTGATGTAACC

Position: -242 Score: 4.1 Sequence: GGTTATAAAAGCTACA Position: -109 Score: 3.8 Sequence: AGTGGTAATTATTACA Locus tag: Npun_F4466
	Npun_F4466	-242	4.1	GGTTATAAAAGCTACA
		-109	3.8	AGTGGTAATTATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnB
Ortholog function: nitrogen regulatory protein P-II
Synechocystis sp. PCC 6803	ssl0707	-184	3.7	GGTACTGATTTTTACA
Nostoc sp. PCC 7120	all2319	-214	3.8	AGTTACACAGACTACA
Synechococcus elongatus PCC 7942	Synpcc7942_0321	-103	4.8	TGTAGCAGTAACTACA
Synechococcus sp. JA-3-3Ab	CYA_1508	-74	4.5	TGTATCCGTTTTTACA
Thermosynechococcus elongatus BP-1	tll0591	-80	5.1	TGTAGCTATTGCTACA

Position: -182 Score: 3.9 Sequence: GGTATTACTCATTACA Locus tag: Npun_F4615
	Npun_F4615	-182	3.9	GGTATTACTCATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, substrate-binding protein
Synechococcus sp. PCC 7002	SYNPCC7002_A0398	-127	4.1	TGTATCAAGTGTCACA
Synechocystis sp. PCC 6803	slr0447	-211	4.5	GGTATCCTATGCTACA
Cyanothece sp. PCC 7425	Cyan7425_2260	-148	3.7	TGTATAATAGATCACA
Microcystis aeruginosa NIES-843	MAE_06220	-170	4.7	AGTAGCAAAAATTACA
		-140	4.6	AGTAGCGAAAGTTACA
Nostoc sp. PCC 7120	all1951	-116	4.3	AGTATCAAAAATAACA
Trichodesmium erythraeum IMS101	Tery_0130	-390	3.8	AGTTACAAAAAAAACA
Synechococcus sp. JA-3-3Ab	CYA_1924	-272	3.7	GGTATCCCGCGATACA
Thermosynechococcus elongatus BP-1	tlr1120	-81	4	TGTAGCCTAGCATACA

Position: -279 Score: 3.7 Sequence: AGTATTTTTTCCTACT Locus tag: Npun_F5010
	Npun_F5010	-279	3.7	AGTATTTTTTCCTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hanA
Ortholog function: DNA binding protein HU
Nostoc sp. PCC 7120	asr3935	-279	3.6	GGTATTTTTTCCTACT

Position: -86 Score: 4.9 Sequence: AGTAGCTTATGTTACA Locus tag: Npun_F5386
	Npun_F5386	-86	4.9	AGTAGCTTATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gifA
Ortholog function: glutamine synthetase inactivating factor IF
Nostoc sp. PCC 7120	asl2329	-78	4.7	CGTAGCATAAGATACA

Position: -140 Score: 5.1 Sequence: TGTAACATAAGCTACA Position: -7 Score: 4.5 Sequence: AGTAACAATGACTACA Locus tag: Npun_R5387
	Npun_R5387	-140	5.1	TGTAACATAAGCTACA
		-7	4.5	AGTAACAATGACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002	SYNPCC7002_A1630	-125	3.5	TGTgACccAgacTACA
Synechocystis sp. PCC 6803	slr1756	-98	4.3	GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142	cce_4432	-89	4.5	AGTATCCAATTATACA
		-30	4	TGTATATATTGAAACC
Cyanothece sp. PCC 8801	PCC8801_0808	-92	4	CGTATCATGGTATACA
Cyanothece sp. PCC 7425	Cyan7425_1839	-221	4.9	TGTAACTCATGATACA
Microcystis aeruginosa NIES-843	MAE_19270	-92	4.7	TGTATCgaAaaATACA
Nostoc sp. PCC 7120	alr2328	-142	4.8	TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101	Tery_3834	-250	4	CGTAACACCCGATACA
Synechococcus elongatus PCC 7942	Synpcc7942_2156	-194	4.8	TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313	PMT0601	-79	4.2	GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_1363	-138	4.3	CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421	gvip146	-116	4	CGTATCTCAGACTACA

Position: -233 Score: 5.1 Sequence: TGTAGCTTATGTTACA Locus tag: Npun_F5388
	Npun_F5388	-233	5.1	TGTAGCTTATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcF
Ortholog function: phycobilisome core component
Cyanothece sp. ATCC 51142	cce_1944	-177	3.8	TGTGATAAGAAATACA
Cyanothece sp. PCC 8801	PCC8801_0807	-251	4	TGTATACCATGATACG
Cyanothece sp. PCC 7425	Cyan7425_1838	-281	4.9	TGTATCATGAGTTACA
Nostoc sp. PCC 7120	all2327	-233	4.8	TGTAGTCTTTGTTACA
Synechococcus elongatus PCC 7942	Synpcc7942_2158	-214	4.8	TGTAACAGCTGATACA

Position: -72 Score: 3.7 Sequence: CATAGCAAAATATACA Locus tag: Npun_R5474
	Npun_R5474	-72	3.7	CATAGCAAAATATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: Isocitrate dehydrogenase (NADP+)
Microcystis aeruginosa NIES-843	MAE_62530	-30	3.7	CGTATAGATAAATACT
Nostoc sp. PCC 7120	alr1827	-6	3.4	TGAAATATGTACAACA

Position: -143 Score: 4.5 Sequence: TGTATCATTATAAACA Position: -103 Score: 3.7 Sequence: AGTATAGGAAAGTACA Locus tag: Npun_F5511
	Npun_F5511	-143	4.5	TGTATCATTATAAACA
		-103	3.7	AGTATAGGAAAGTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcA
Ortholog function: Global nitrogen transcription regulator, Crp family
Synechococcus sp. PCC 7002	SYNPCC7002_A1675	-177	3.9	TGAAGCAAAAAGTACA
Cyanothece sp. PCC 7425	Cyan7425_0755	-173	4.8	TGTATCCGATGATACA
Nostoc sp. PCC 7120	alr4392	-151	3.7	GGTATCATTATGAACA
		-111	3.7	AGTATAGGAAAGTACA
Synechococcus elongatus PCC 7942	Synpcc7942_0127	-157	4.7	AGTAGCAGTTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_1799	-181	4.7	TGTAGCTCCTGCTACA
Gloeobacter violaceus PCC 7421	gvip454	-77	3.9	AGTAGTCCCTAATACA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NtcA regulog to Nostoc punctiforme

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --