Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcA regulog to Nostoc punctiforme

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Nostoc punctiforme
Orthologous TF(s) Npun_F5511
Regulated genes 29
Built upon 228 sites [see more]
Predicted regulatory interactions in Nostoc punctiforme
Locus tag Position Score Sequence
Position: -1
Score: 3.6
Sequence: TATGACTATAGCTACA
Locus tag: Npun_F0338
Npun_F0338 -1 3.6 TATGACTATAGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxC
Ortholog function: Cytochrome c oxidase subunit 3 (EC 1.9.3.1)
Cyanothece sp. PCC 8801 PCC8801_0569 -148 3.8 TTTATTATTTGTTACC
Microcystis aeruginosa NIES-843 MAE_22950 -141 3.8 AGTTATTTTAAATACT
Nostoc sp. PCC 7120 alr2516 -291 3.5 AGAAGTAGAAGCTACT
Position: -106
Score: 3.7
Sequence: CGTATAGCAAACTACA
Position: 21
Score: 4.1
Sequence: TCTATCAATTACTACT
Locus tag: Npun_F0704
Npun_F0704 -106 3.7 CGTATAGCAAACTACA
21 4.1 TCTATCAATTACTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0076
Ortholog function: hypothetical protein
Cyanothece sp. PCC 7425 Cyan7425_0729 -128 4.3 TGTAACATTTGTTATT
-71 4.1 AGTATTGGTGGATACA
Nostoc sp. PCC 7120 asr0064 -107 3.7 CGTATAGCAAAATACA
Trichodesmium erythraeum IMS101 Tery_2891 -191 4.1 TGTAATTTAGACAACA
-110 4.6 TGTAACTATATATACT
Thermosynechococcus elongatus BP-1 tsr2448 -63 4.1 AGTATTGGATATTACA
Position: -298
Score: 4
Sequence: CGTAACAATTTATACG
Locus tag: Npun_R1528
Npun_R1528 -298 4 CGTAACAATTTATACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002 SYNPCC7002_A1827 -111 4 CGTAGTTAACACTACA
Synechocystis sp. PCC 6803 slr0898 -74 4.7 TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142 cce_1223 -76 4.7 TGTTACATTAGCTACA
Cyanothece sp. PCC 8801 PCC8801_2468 -75 4.6 TGTTACAATTAATACA
Cyanothece sp. PCC 7425 Cyan7425_4573 -123 4.5 TGTAACTTAATATACC
Microcystis aeruginosa NIES-843 MAE_18410 -190 4.1 TGTTACAGACAATACA
Trichodesmium erythraeum IMS101 Tery_1068 -276 3.8 TGTATTTTTATATAGT
-199 4.1 TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942 Synpcc7942_1240 -220 4.9 TGTAGCAATTGCTACT
-149 4.3 AGTATCAATGATTACT
-80 4.4 TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab CYA_0612 -72 3.9 TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421 gvip212 -146 4 TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1 tlr1349 -82 4.6 AGTAGCAAAATTTACA
Position: -79
Score: 4.4
Sequence: TGTAACTAACTATACT
Position: -21
Score: 4.5
Sequence: TGTAATTCAGGCTACA
Locus tag: Npun_F1534
Npun_F1534 -79 4.4 TGTAACTAACTATACT
-21 4.5 TGTAATTCAGGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: Nitrogen assimilation transcriptional activator, LysR family
Synechococcus sp. PCC 7002 SYNPCC7002_A1632 -87 3.9 TGTAACATccGgaACA
Cyanothece sp. ATCC 51142 cce_0198 -73 4.2 AGTATCAATTTCTACG
Cyanothece sp. PCC 8801 PCC8801_2329 -80 4.7 TGTATCAAATTCTACT
Cyanothece sp. PCC 7425 Cyan7425_1599 -78 4.6 TGTATCACTATCTACA
Microcystis aeruginosa NIES-843 MAE_09380 -80 4.1 gGTAgCAatTtcTACc
Nostoc sp. PCC 7120 all0602 -80 4.5 TGTAACAAAATCTACC
-21 4.7 TGTAATTAAGGCTACA
Trichodesmium erythraeum IMS101 Tery_4333 -27 4 TGTATAAAATAACACA
Synechococcus elongatus PCC 7942 Synpcc7942_1242 -153 4.3 AGTAATCATTGATACT
-82 4.9 AGTAGCAATTGCTACA
Synechococcus sp. JA-3-3Ab CYA_0984 -89 4.2 TGTAACGGTGTTTACA
Gloeobacter violaceus PCC 7421 gvip213 -46 4 CGTAACCCCAGATACA
Thermosynechococcus elongatus BP-1 null -122 3.9 TGTATCAATCAACACA
Position: -74
Score: 4.7
Sequence: TGTAGTTAAGGATACA
Locus tag: Npun_R3288
Npun_R3288 -74 4.7 TGTAGTTAAGGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Nostoc sp. PCC 7120 alr0992 -50 4.7 TGTAACTAAGTATACA
Position: -51
Score: 4.9
Sequence: TGTAGCTGTTGCTACA
Locus tag: Npun_F3461
Npun_F3461 -51 4.9 TGTAGCTGTTGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0264
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0264 -29 5 TGTATCAAATACTACA
Microcystis aeruginosa NIES-843 MAE_18580 -68 4.8 TGTATCTTTAGCTACT
Nostoc sp. PCC 7120 all1327 -52 4.3 CGTAGTGTATGTTACA
Position: -89
Score: 4.2
Sequence: GGTATTCACAGTTACA
Locus tag: Npun_F3903
Npun_F3903 -89 4.2 GGTATTCACAGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2395
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A2395 -200 4.5 TGTTACTTAAATTACA
-92 4.5 TGTAGTAGACGTTACA
Cyanothece sp. ATCC 51142 cce_2729 -148 4 TGTAACATATGATAAC
-87 4.6 TGTAATATTGATTACA
Cyanothece sp. PCC 8801 PCC8801_2066 -53 4.8 TGTAATATTAATTACA
Cyanothece sp. PCC 7425 Cyan7425_0833 -38 3.7 AGTAGTTTAATAAACT
Microcystis aeruginosa NIES-843 MAE_38700 -87 4.2 TGTAATCATCTTTACA
Nostoc sp. PCC 7120 alr4308 -64 3.9 GGTAGTCGGAGTTACA
Trichodesmium erythraeum IMS101 Tery_0672 -94 4.3 AGTATTCAAAATTACA
Synechococcus sp. JA-3-3Ab CYA_0570 -139 3.9 GGTAAGATAAAATACA
-81 4.2 CGTATCAAAGGCTACT
Thermosynechococcus elongatus BP-1 tlr1468 -85 4.3 TGTAGTTGAGTTTACA
Position: -264
Score: 3.9
Sequence: TATAGATATTTCTACA
Position: -76
Score: 4.7
Sequence: AGTAACAAAGGCTACA
Locus tag: Npun_R3907
Npun_R3907 -264 3.9 TATAGATATTTCTACA
-76 4.7 AGTAACAAAGGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrrA
Ortholog function: Transcriptional regulator, OmpR family
Synechococcus sp. PCC 7002 SYNPCC7002_A0496 -75 4.1 CGTAACCACGGTTACA
Synechocystis sp. PCC 6803 sll1330 -75 4.6 GGTAACTGTTGTTACA
Cyanothece sp. ATCC 51142 cce_1808 -76 4.3 CGTAGCCGATGTTACA
Cyanothece sp. PCC 8801 PCC8801_3375 -76 4.5 CGTAGCAGATGTTACA
Cyanothece sp. PCC 7425 Cyan7425_0851 -82 4.1 AGTAGCTAGAGTTACG
Nostoc sp. PCC 7120 all4312 -75 4.5 AGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_0675 -89 4.7 AGTAGCTTCTGTTACA
Thermosynechococcus elongatus BP-1 tlr1330 -138 4 AGTATTATTCGTTACG
Position: -104
Score: 3.1
Sequence: AGTATTTATTTAAAGT
Locus tag: Npun_R4132
Npun_R4132 -104 3.1 AGTATTTATTTAAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifJ
Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Synechococcus sp. PCC 7002 SYNPCC7002_A1443 -272 4.1 TTTATCATTTTCTACA
Synechocystis sp. PCC 6803 sll0741 -181 3.3 AGAATCAACAAAAACA
Cyanothece sp. ATCC 51142 cce_0953 -52 3.8 TGCAACAAAAATTACC
Cyanothece sp. PCC 8801 PCC8801_3918 -265 3.5 AGTAACCATAATTATT
Cyanothece sp. PCC 7425 Cyan7425_4369 -120 3.1 TCTAACGTATTCTCCA
Nostoc sp. PCC 7120 alr1911 -281 3.2 TGAATTTGATGTAACC
Position: -242
Score: 4.1
Sequence: GGTTATAAAAGCTACA
Position: -109
Score: 3.8
Sequence: AGTGGTAATTATTACA
Locus tag: Npun_F4466
Npun_F4466 -242 4.1 GGTTATAAAAGCTACA
-109 3.8 AGTGGTAATTATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnB
Ortholog function: nitrogen regulatory protein P-II
Synechocystis sp. PCC 6803 ssl0707 -184 3.7 GGTACTGATTTTTACA
Nostoc sp. PCC 7120 all2319 -214 3.8 AGTTACACAGACTACA
Synechococcus elongatus PCC 7942 Synpcc7942_0321 -103 4.8 TGTAGCAGTAACTACA
Synechococcus sp. JA-3-3Ab CYA_1508 -74 4.5 TGTATCCGTTTTTACA
Thermosynechococcus elongatus BP-1 tll0591 -80 5.1 TGTAGCTATTGCTACA
Position: -182
Score: 3.9
Sequence: GGTATTACTCATTACA
Locus tag: Npun_F4615
Npun_F4615 -182 3.9 GGTATTACTCATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, substrate-binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0398 -127 4.1 TGTATCAAGTGTCACA
Synechocystis sp. PCC 6803 slr0447 -211 4.5 GGTATCCTATGCTACA
Cyanothece sp. PCC 7425 Cyan7425_2260 -148 3.7 TGTATAATAGATCACA
Microcystis aeruginosa NIES-843 MAE_06220 -170 4.7 AGTAGCAAAAATTACA
-140 4.6 AGTAGCGAAAGTTACA
Nostoc sp. PCC 7120 all1951 -116 4.3 AGTATCAAAAATAACA
Trichodesmium erythraeum IMS101 Tery_0130 -390 3.8 AGTTACAAAAAAAACA
Synechococcus sp. JA-3-3Ab CYA_1924 -272 3.7 GGTATCCCGCGATACA
Thermosynechococcus elongatus BP-1 tlr1120 -81 4 TGTAGCCTAGCATACA
Position: -279
Score: 3.7
Sequence: AGTATTTTTTCCTACT
Locus tag: Npun_F5010
Npun_F5010 -279 3.7 AGTATTTTTTCCTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hanA
Ortholog function: DNA binding protein HU
Nostoc sp. PCC 7120 asr3935 -279 3.6 GGTATTTTTTCCTACT
Position: -86
Score: 4.9
Sequence: AGTAGCTTATGTTACA
Locus tag: Npun_F5386
Npun_F5386 -86 4.9 AGTAGCTTATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gifA
Ortholog function: glutamine synthetase inactivating factor IF
Nostoc sp. PCC 7120 asl2329 -78 4.7 CGTAGCATAAGATACA
Position: -140
Score: 5.1
Sequence: TGTAACATAAGCTACA
Position: -7
Score: 4.5
Sequence: AGTAACAATGACTACA
Locus tag: Npun_R5387
Npun_R5387 -140 5.1 TGTAACATAAGCTACA
-7 4.5 AGTAACAATGACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002 SYNPCC7002_A1630 -125 3.5 TGTgACccAgacTACA
Synechocystis sp. PCC 6803 slr1756 -98 4.3 GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142 cce_4432 -89 4.5 AGTATCCAATTATACA
-30 4 TGTATATATTGAAACC
Cyanothece sp. PCC 8801 PCC8801_0808 -92 4 CGTATCATGGTATACA
Cyanothece sp. PCC 7425 Cyan7425_1839 -221 4.9 TGTAACTCATGATACA
Microcystis aeruginosa NIES-843 MAE_19270 -92 4.7 TGTATCgaAaaATACA
Nostoc sp. PCC 7120 alr2328 -142 4.8 TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_3834 -250 4 CGTAACACCCGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_2156 -194 4.8 TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313 PMT0601 -79 4.2 GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1363 -138 4.3 CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421 gvip146 -116 4 CGTATCTCAGACTACA
Position: -233
Score: 5.1
Sequence: TGTAGCTTATGTTACA
Locus tag: Npun_F5388
Npun_F5388 -233 5.1 TGTAGCTTATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcF
Ortholog function: phycobilisome core component
Cyanothece sp. ATCC 51142 cce_1944 -177 3.8 TGTGATAAGAAATACA
Cyanothece sp. PCC 8801 PCC8801_0807 -251 4 TGTATACCATGATACG
Cyanothece sp. PCC 7425 Cyan7425_1838 -281 4.9 TGTATCATGAGTTACA
Nostoc sp. PCC 7120 all2327 -233 4.8 TGTAGTCTTTGTTACA
Synechococcus elongatus PCC 7942 Synpcc7942_2158 -214 4.8 TGTAACAGCTGATACA
Position: -72
Score: 3.7
Sequence: CATAGCAAAATATACA
Locus tag: Npun_R5474
Npun_R5474 -72 3.7 CATAGCAAAATATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: Isocitrate dehydrogenase (NADP+)
Microcystis aeruginosa NIES-843 MAE_62530 -30 3.7 CGTATAGATAAATACT
Nostoc sp. PCC 7120 alr1827 -6 3.4 TGAAATATGTACAACA
Position: -143
Score: 4.5
Sequence: TGTATCATTATAAACA
Position: -103
Score: 3.7
Sequence: AGTATAGGAAAGTACA
Locus tag: Npun_F5511
Npun_F5511 -143 4.5 TGTATCATTATAAACA
-103 3.7 AGTATAGGAAAGTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcA
Ortholog function: Global nitrogen transcription regulator, Crp family
Synechococcus sp. PCC 7002 SYNPCC7002_A1675 -177 3.9 TGAAGCAAAAAGTACA
Cyanothece sp. PCC 7425 Cyan7425_0755 -173 4.8 TGTATCCGATGATACA
Nostoc sp. PCC 7120 alr4392 -151 3.7 GGTATCATTATGAACA
-111 3.7 AGTATAGGAAAGTACA
Synechococcus elongatus PCC 7942 Synpcc7942_0127 -157 4.7 AGTAGCAGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1799 -181 4.7 TGTAGCTCCTGCTACA
Gloeobacter violaceus PCC 7421 gvip454 -77 3.9 AGTAGTCCCTAATACA