Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of GntR regulog to Yersinia pestis Nepal516

Reference regulog properties
Source regulog: GntR - Enterobacteriales  
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Gluconate utilization
Effector: Gluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia pestis Nepal516
Orthologous TF(s) YPN_3604
Regulated genes 4
Built upon 61 sites [see more]
Predicted regulatory interactions in Yersinia pestis Nepal516
Locus tag Position Score Sequence
Position: -237
Score: 5.7
Sequence: TCACGTTACCGGTAACATGT
Locus tag: YPN_2131
YPN_2131 -237 5.7 TCACGTTACCGGTAACATGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdxX
Ortholog function: putative 2-ketogluconate dehydrogenase
Yersinia pestis KIM y1651 -237 5.7 TCACGTTACCGGTAACATGT
Position: -347
Score: 4
Sequence: TCACGTATCCGGTAACAGCC
Locus tag: YPN_2134
YPN_2134 -347 4 TCACGTATCCGGTAACAGCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnO
Ortholog function: Gluconate 5-dehydrogenase (EC 1.1.1.69)
Escherichia coli str. K-12 substr. MG1655 b4266 -146 3.8 TAtTtcTACtGaTAAgAaTT
-116 3.8 TcAcGTTAtgcGTAACATag
Salmonella typhimurium LT2 STM4483 -116 4.3 TcAcGTTAtgcGTAACATTg
Citrobacter koseri ATCC BAA-895 CKO_02793 -39 4.8 TACAGTTACGCGTAACAGCT
Serratia proteamaculans 568 Spro_3288 -120 4.2 TcAcGTTAaaGGTAACAgcT
Position: -91
Score: 5.6
Sequence: ATTTGTTACCGGTATCATGA
Position: -77
Score: 5.5
Sequence: TCATGATACCGGTAACATGG
Locus tag: YPN_3602
YPN_3602 -91 5.6 ATTTGTTACCGGTATCATGA
-77 5.5 TCATGATACCGGTAACATGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntK
Ortholog function: Thermoresistant gluconokinase (EC 2.7.1.12)
Yersinia pestis KIM y3876 -91 5.6 ATTTGTTACCGGTATCATGA
-77 5.5 TCATGATACCGGTAACATGG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4159 -77 5.3 ATATGATACGGGTAACATGT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1839 -91 5.4 ACTTGTTACCGGTATCATGA
-77 5.1 TCATGATACCGGTAACGTGA
Position: -159
Score: 6
Sequence: CCATGTTACCGGTATCATGA
Locus tag: YPN_3603
YPN_3603 -159 6 CCATGTTACCGGTATCATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntT
Ortholog function: High-affinity H+/gluconate symporter
Yersinia pestis KIM y3875 -159 6 CCATGTTACCGGTATCATGA
-145 5.1 TCATGATACCGGTAACAAAT
Serratia proteamaculans 568 Spro_4651 -185 5.3 GGTTGTTACCGGTATCATGA
-171 5.4 TCATGATACCGGTAACAATG
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