Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NrdR regulog to Escherichia coli B str. REL606

Reference regulog properties
Source regulog: NrdR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Ribonucleotide reductases
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Escherichia coli B str. REL606
Orthologous TF(s) ECB_00361
Regulated genes 3
Built upon 70 sites [see more]
Predicted regulatory interactions in Escherichia coli B str. REL606
Locus tag Position Score Sequence
Position: -93
Score: 5.7
Sequence: CCCCTATATATAGTGT
Locus tag: ECB_02160
ECB_02160 -93 5.7 CCCCTATATATAGTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdA
Ortholog function: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Escherichia coli str. K-12 substr. MG1655 b2234 -93 5.7 CCCCTATATATAGTGT
-62 3.5 GTACTACAGGTAGTCT
Position: -89
Score: 5.5
Sequence: CAACTACATCTAGTAT
Locus tag: ECB_02529
ECB_02529 -89 5.5 CAACTACATCTAGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdH
Ortholog function: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
Escherichia coli str. K-12 substr. MG1655 b2673 -120 4.8 TTGCTATATATTGTGT
-89 5.5 CAACTACATCTAGTAT
Salmonella typhimurium LT2 STM2805 -121 4.7 TTCCCATATCTTGTAT
-89 5.5 CAACTACATCTAGTAT
Enterobacter sp. 638 Ent638_3153 -106 4.6 TTCCCATATCTTGTGT
-75 5.5 CAACTACATCTAGTAT
Position: -208
Score: 4.3
Sequence: GCACTATATATAGACT
Position: -177
Score: 5
Sequence: ACCCAATATGTTGTAT
Locus tag: ECB_04106
ECB_04106 -208 4.3 GCACTATATATAGACT
-177 5 ACCCAATATGTTGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Escherichia coli str. K-12 substr. MG1655 b4238 -208 4.3 GCACTATATATAGACT
-177 5 ACCCAATATGTTGTAT
Salmonella typhimurium LT2 STM4452 -207 4.5 TCACTACATATAGACT
-177 5 ACCCAATATGTTGTAT
Citrobacter koseri ATCC BAA-895 CKO_03580 -225 4.7 TCACTACATATAGAAC
-194 5 ACCCAATATGTTGTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04646 -207 4.7 TCACTACATATAGAAC
-176 5 GCCCAACATATTGTAT
Enterobacter sp. 638 Ent638_0437 -203 4.7 TCACTACATATAGAAC
-172 5.1 ACCCAACATCTTGTAT
Erwinia amylovora ATCC 49946 EAM_3059 -67 3 ATACCATATATAGATA
-36 3.4 GGACTATATGTAGTTG
Yersinia pestis KIM y0733 -142 5.1 TACCCATATATAGTGT
-111 4.7 CATCTATATGTAGTAG
Serratia proteamaculans 568 Spro_0525 -189 5 TATCTATATATAGTGC
-158 4.9 CACCTATATGTAGTAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0375 -132 4.4 TTTCAATATATAGTGC
-101 5.5 TACCTACATATAGTGT
Edwardsiella tarda EIB202 ETAE_0423 -156 4.8 TTCCCATATATAGTGT
-124 5.1 CACCTATATATAGTAG
Proteus mirabilis HI4320 PMI3451 -143 4.7 TTACTATATATTGTGC
-111 4.2 ATACAACATATAGTAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4499 -119 5.1 TTACTATATATTGTGT
-88 3.8 AGACTATATATAGCAA
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