Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtrC regulog to Escherichia coli CFT073

Reference regulog properties
Source regulog: NtrC - Enterobacteriales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Escherichia coli CFT073
Orthologous TF(s) c4817
Regulated genes 7
Built upon 130 sites [see more]
Predicted regulatory interactions in Escherichia coli CFT073
Locus tag Position Score Sequence
Position: -47
Score: 5.4
Sequence: CGCACCATCATGGTGCG
Locus tag: c0988
c0988 -47 5.4 CGCACCATCATGGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: potG
Ortholog function: Putrescine ABC transporter, ATP-binding component
Escherichia coli str. K-12 substr. MG1655 b0855 -47 5.4 CGCACCATTATGGTGCG
Citrobacter koseri ATCC BAA-895 CKO_02252 -53 4.6 CGCACTTTTATGGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00886 -39 5.2 AGCACCAGGATGGTGCA
Enterobacter sp. 638 Ent638_1369 -53 4.8 CGCACCGAAAGGGTGCG
Position: -135
Score: 3.9
Sequence: TGCACTCTCATCGCGCA
Locus tag: c1149
c1149 -135 3.9 TGCACTCTCATCGCGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rutA
Ortholog function: Pyrimidine oxygenase
Escherichia coli str. K-12 substr. MG1655 b1012 -168 3.9 TGCACTCTCATCGCGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01038 -223 4.1 TGCACCCTGATTGCGCA
-189 3.8 TGCACTGATTTTGACCA
Enterobacter sp. 638 Ent638_1525 -227 4.1 TGCACCGCCATCGCGCA
Serratia proteamaculans 568 Spro_1823 -230 3.9 TGCACCTTTAATGAGCA
Position: -205
Score: 5.1
Sequence: TGAACCATCGTGGTGCA
Locus tag: c2446
c2446 -205 5.1 TGAACCATCGTGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nac
Ortholog function: Nitrogen assimilation transcriptional regulator, LysR family
Escherichia coli str. K-12 substr. MG1655 b1988 -205 5.1 TGAACCATCGTGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_00955 -206 4.8 TGCGCCATTCTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02437 -206 5 TGCACCGTTGTAGTGCG
Enterobacter sp. 638 Ent638_2564 -206 4.8 TGCACGATTCTGGTGCA
Erwinia amylovora ATCC 49946 EAM_2112 -228 4.3 TGCACCATTAACGAGCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2888 -197 4.5 TGCTTTAAGATGGTGCA
Position: -162
Score: 5.5
Sequence: TGCACTATCGTGGTGCA
Locus tag: c2851
c2851 -162 5.5 TGCACTATCGTGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hisJ
Ortholog function: Histidine ABC transporter, substrate-binding component
Escherichia coli str. K-12 substr. MG1655 b2309 -162 5.5 TGCACTATCGTGGTGCA
Salmonella typhimurium LT2 STM2354 -211 4.4 GGAACTATCACGGTGCA
-182 5.1 TGCACCTTTTTGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_00478 -212 4.3 TTAACCATCACGGTGCG
-183 5.8 TGCACCATCATGGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02699 -215 5.3 TGCCCCAAAAGGGTGCA
-185 4 TGGATCATTTCAGTGCA
Enterobacter sp. 638 Ent638_2858 -212 4.1 TTCCCTGTCACGGTGCG
-182 5.2 TGACCCAATATGGTGCA
Yersinia pestis KIM y1607 -123 4.8 AGCACTGAAATGGGGCA
Serratia proteamaculans 568 Spro_3326 -265 4.4 CGCACTGAATTAGGGCG
-243 4.3 TGCACCATAATGATCCC
Position: -38
Score: 6.1
Sequence: TGCACTAAAATGGTGCA
Locus tag: c4818
c4818 -38 6.1 TGCACTAAAATGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntrB
Ortholog function: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655 b3869 -38 6.1 TGCACTAAAATGGTGCA
Salmonella typhimurium LT2 STM4006 -39 6.1 TGCACTAAAATGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_03143 -40 6 TGCACTAAATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04177 -39 6 TGCACTAAATTGGTGCA
Enterobacter sp. 638 Ent638_4097 -38 5.8 TGCACTAAATTAGTGCA
Erwinia amylovora ATCC 49946 EAM_0031 -40 5.7 TGCACTAAGTTGGTGCA
Yersinia pestis KIM y3805 -29 5.3 TGCACCGAAACTGTGCA
Serratia proteamaculans 568 Spro_4882 -29 5.8 TGCACTAAAAAGGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0028 -29 5.2 TGCACCATGCTGGTGCG
Edwardsiella tarda EIB202 ETAE_3494 -28 6.1 TGCACCAAAATAGTGCA
Proteus mirabilis HI4320 PMI2883 -32 6.1 TGCACTAAAATGGTGCA
Photorhabdus luminescens subsp. laumondii TTO1 plu0236 -26 5.7 TGCACCAAAAAAGTGCA
Position: -221
Score: 5.8
Sequence: TGCACCAATATGGTGCT
Position: -189
Score: 5.4
Sequence: AGCACTATATTGGTGCA
Locus tag: c4819
c4819 -221 5.8 TGCACCAATATGGTGCT
-189 5.4 AGCACTATATTGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Escherichia coli str. K-12 substr. MG1655 b3870 -221 5.9 TGCACCAACATGGTGCT
-189 5.4 AGCACTATATTGGTGCA
Salmonella typhimurium LT2 STM4007 -224 5.5 TGCACCAATGTGGTGCT
-192 5.2 AGCACTATTTTGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_03140 -202 5.9 TGCACCAACATGGTGCT
-170 5.4 AGCACTATATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04178 -251 6 TGCACCAAAATGGTGCT
-219 5.2 AGCACTATTTTGGTGCA
Enterobacter sp. 638 Ent638_4096 -237 5.3 CGCACCATTATGGTGCT
-205 5.6 AGCACTATAATGGTGCA
Erwinia amylovora ATCC 49946 EAM_0032 -288 5.1 TGCACCAAAATGGTGAC
-256 5.3 AGCACCAGAATGGTGCG
Yersinia pestis KIM y3804 -384 5.6 TGCACCAAAATAGTGCC
-353 5.5 GGCACCAAAATAGTGCA
Serratia proteamaculans 568 Spro_4881 -220 5.2 TGCACCATTACAGTGCT
-188 5.2 TGCACCATTTAAGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0029 -218 5.3 TGCACCAAACAAGTGCA
-186 5.4 AGCACCAACTTGGTGCT
Edwardsiella tarda EIB202 ETAE_3493 -220 5.5 TGCACCAAGATTGTGCG
-188 5.2 TGCACCATTATGGAGCA
Proteus mirabilis HI4320 PMI2882 -223 5.9 TGCACCAAAATTGTGCA
-189 5.8 TGCACCAAATTTGTGCA
Photorhabdus luminescens subsp. laumondii TTO1 plu0237 -303 5.1 CGCACTAATATTGTGCG
-272 5.9 TGCACCAATATAGTGCA
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