Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of SdaR regulog to Pectobacterium carotovorum WPP14

Reference regulog properties
Source regulog: SdaR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: SdaR
Regulation mode: activator
Biological process: Glucarate utilization; Galactarate utilization
Effector: Glycerate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pectobacterium carotovorum WPP14
Orthologous TF(s) null
Regulated genes 3
Built upon 31 sites [see more]
Predicted regulatory interactions in Pectobacterium carotovorum WPP14
Locus tag Position Score Sequence
Position: -80
Score: 4.3
Sequence: CTTTGTTAATTTGCACAATG
Locus tag: null
null -80 4.3 CTTTGTTAATTTGCACAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdaR
Ortholog function: Glycerate-responsive transcriptional regulator for hexarate utilization, SdaR family
Escherichia coli str. K-12 substr. MG1655 b0162 -69 5.3 CTTTAGGCATTTGCACAATG
Salmonella typhimurium LT2 STM0210 -71 5.8 TTTTGTGCATTTGCACAATG
Citrobacter koseri ATCC BAA-895 CKO_03205 -17 5.1 GTTTGTGCAGATGCACAATG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00177 -17 5.4 CTTAGTGCAAATGCACAATG
Enterobacter sp. 638 Ent638_0702 -71 5.3 CTTTGTGCATTCGCACAATG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3300 -80 4.3 CTTTGTTAATTTGCACAATG
Position: -263
Score: 4.6
Sequence: TATAGGGCAAGTGCACCAAC
Locus tag: null
null -263 4.6 TATAGGGCAAGTGCACCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gudP
Ortholog function: D-glucarate permease, MFS family
Escherichia coli str. K-12 substr. MG1655 b2789 -385 4.7 TTTCAGGCAAATGCCAGTAA
Salmonella typhimurium LT2 STM2962 -376 5.5 CTTTGTGCATATGCCCGCAA
Citrobacter koseri ATCC BAA-895 CKO_04143 -388 4.9 CATCAGGCATTTGCCCTAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03132 -376 4.4 CTTTAGGCAAACGCCACAAT
-221 4.6 TTTCAGGCATTCGCCACAAA
Enterobacter sp. 638 Ent638_3242 -240 4.9 CGTTGTGCTTATGCCTCAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3577 -440 4.2 CATTATGCAATTGACCTAAG
-264 4.6 TATAGGGCAAGTGCACCAAC
Position: -301
Score: 4.6
Sequence: GTTGGTGCACTTGCCCTATA
Locus tag: null
null -301 4.6 GTTGGTGCACTTGCCCTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: garD
Ortholog function: D-galactarate dehydratase (EC 4.2.1.42)
Escherichia coli str. K-12 substr. MG1655 b3128 -250 4.5 CATTGTGCAAATGCTAATTT
-208 6 TTTTGAGCATATGCACATAA
Salmonella typhimurium LT2 STM3250 -276 4.8 CATTGTGCAAACGCTCATTA
-233 5.1 TTTTGAGCATACGCCCATGA
Citrobacter koseri ATCC BAA-895 CKO_04527 -223 5.6 TTTTGAGCATTTGCACAACG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03540 -206 4.7 AATTGTGCTTATGCCATAAG
Enterobacter sp. 638 Ent638_3570 -224 5.4 ATTTGAGCATATGCACAACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3578 -316 4.6 GTTGGTGCACTTGCCCTATA
-140 4.2 CTTAGGTCAATTGCATAATG
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